Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05345

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,100,374	+		DZA65_RS05340	0.45	+0.1
1,100,374	+		DZA65_RS05340	0.45	-0.5
1,100,374	+		DZA65_RS05340	0.45	-1.7
1,100,375	-		DZA65_RS05340	0.45	-3.5
1,100,375	-		DZA65_RS05340	0.45	-1.1
1,100,375	-		DZA65_RS05340	0.45	-0.7
1,100,375	-		DZA65_RS05340	0.45	+0.5
1,100,375	-		DZA65_RS05340	0.45	-1.1
1,100,375	-		DZA65_RS05340	0.45	+0.3
1,100,376	+		DZA65_RS05340	0.45	-1.3
1,100,376	+		DZA65_RS05340	0.45	-1.3
1,100,376	+		DZA65_RS05340	0.45	+0.5
1,100,376	+		DZA65_RS05340	0.45	+1.1
1,100,376	+		DZA65_RS05340	0.45	+0.3
1,100,376	+		DZA65_RS05340	0.45	-1.5
1,100,377	-		DZA65_RS05340	0.45	-1.7
1,100,377	-		DZA65_RS05340	0.45	-2.1
1,100,377	-		DZA65_RS05340	0.45	-0.3
1,100,439	-		DZA65_RS05340	0.49	-0.1
1,100,443	+		DZA65_RS05340	0.50	-1.2
1,100,443	+		DZA65_RS05340	0.50	-0.8
1,100,444	-		DZA65_RS05340	0.50	-0.8
1,100,444	-		DZA65_RS05340	0.50	-1.7
1,100,444	-		DZA65_RS05340	0.50	-1.9
1,100,444	-		DZA65_RS05340	0.50	+1.1
1,100,444	-		DZA65_RS05340	0.50	-0.7
1,100,665	-		DZA65_RS05340	0.66	-1.2
1,100,665	-		DZA65_RS05340	0.66	-0.1
1,100,704	+		DZA65_RS05340	0.69	+1.6
1,100,704	+		DZA65_RS05340	0.69	+0.5
1,100,705	-		DZA65_RS05340	0.69	+0.0
1,100,725	+				+1.5
1,100,782	+		DZA65_RS05340	0.75	-1.7
1,100,859	+		DZA65_RS05340	0.81	-0.1
1,100,871	+		DZA65_RS05340	0.82	-1.1
1,100,948	+		DZA65_RS05340	0.87	-1.1
1,100,948	+		DZA65_RS05340	0.87	-0.1
1,101,029	-				+0.3
1,101,029	-				-0.1
1,101,029	-				-0.8
1,101,048	+				-0.8
1,101,048	+				-1.7
1,101,048	+				+0.1
1,101,048	+				+1.5
1,101,048	+				-0.6
1,101,048	+				-1.2
1,101,048	+				-1.3
1,101,048	+				-0.7
1,101,048	+				-2.8
1,101,049	-				-1.3
1,101,049	-				+0.2
1,101,049	-				-0.7
1,101,049	-				+0.7
1,101,049	-				-1.7
1,101,049	-				-0.3
1,101,049	-				-1.1
1,101,049	-				+0.9
1,101,049	-				+0.8
1,101,049	-				-0.8
1,101,049	-				-0.1
1,101,085	+				+0.3
1,101,086	-				+2.1
1,101,086	-				-1.5
1,101,086	-				-0.9
1,101,088	+				-0.1
1,101,088	+				-0.9
1,101,088	+				-1.3
1,101,088	+				+0.8
1,101,089	-				+1.2
1,101,089	-				-0.3
1,101,089	-				-0.4
1,101,089	-				-0.3
1,101,137	+				-0.9
1,101,192	+				+0.1
1,101,192	+				+0.4
1,101,193	-				-1.3
1,101,198	-				+0.2
1,101,211	+				-3.2
1,101,211	+				+0.1
1,101,228	+				-0.3
1,101,229	-				-0.3
1,101,260	+				+2.1
1,101,261	-				-0.3
1,101,261	-				-0.2
1,101,362	+				+1.2
1,101,362	+				-1.3
1,101,363	-				-0.5
1,101,365	+				-0.8
1,101,365	+				-0.5
1,101,366	-				-1.7
1,101,396	+				-0.1
1,101,396	+				-0.9
1,101,414	-				+0.5
1,101,463	+		DZA65_RS05345	0.11	-0.5
1,101,464	-		DZA65_RS05345	0.11	+0.1
1,101,466	-		DZA65_RS05345	0.11	-1.1
1,101,502	+		DZA65_RS05345	0.14	-1.5
1,101,503	-		DZA65_RS05345	0.14	-0.8
1,101,651	+		DZA65_RS05345	0.26	-1.9
1,101,651	+		DZA65_RS05345	0.26	-0.2
1,101,651	+		DZA65_RS05345	0.26	-0.6
1,101,652	-		DZA65_RS05345	0.26	+1.1
1,101,674	+		DZA65_RS05345	0.28	-0.8
1,101,675	-		DZA65_RS05345	0.28	-0.1
1,101,675	-		DZA65_RS05345	0.28	-1.1
1,101,702	+		DZA65_RS05345	0.30	-0.1
1,101,702	+		DZA65_RS05345	0.30	-1.9
1,101,703	-		DZA65_RS05345	0.31	+0.9
1,101,703	-		DZA65_RS05345	0.31	-0.8
1,101,703	-		DZA65_RS05345	0.31	-0.6
1,101,811	+		DZA65_RS05345	0.39	-1.1
1,101,811	+		DZA65_RS05345	0.39	-1.3
1,101,812	-		DZA65_RS05345	0.39	-2.6
1,101,812	-		DZA65_RS05345	0.39	-1.1
1,101,812	-		DZA65_RS05345	0.39	+0.1
1,101,812	-		DZA65_RS05345	0.39	+1.2
1,101,816	+		DZA65_RS05345	0.40	-2.9
1,101,816	+		DZA65_RS05345	0.40	+0.3
1,101,816	+		DZA65_RS05345	0.40	-0.5
1,101,892	-		DZA65_RS05345	0.46	-1.8
1,102,027	+		DZA65_RS05345	0.57	+0.5
1,102,027	+		DZA65_RS05345	0.57	-0.1
1,102,027	+		DZA65_RS05345	0.57	-0.5
1,102,027	+		DZA65_RS05345	0.57	-1.4
1,102,027	+		DZA65_RS05345	0.57	-0.5
1,102,027	+		DZA65_RS05345	0.57	-0.5
1,102,027	+		DZA65_RS05345	0.57	-0.9
1,102,027	+		DZA65_RS05345	0.57	-0.1
1,102,027	+		DZA65_RS05345	0.57	-1.3
1,102,027	+		DZA65_RS05345	0.57	-0.5
1,102,027	+		DZA65_RS05345	0.57	-1.7
1,102,027	+				-0.8
1,102,027	+		DZA65_RS05345	0.57	-0.5
1,102,027	+		DZA65_RS05345	0.57	+0.3
1,102,027	+		DZA65_RS05345	0.57	+0.2
1,102,027	+		DZA65_RS05345	0.57	+0.5
1,102,027	+		DZA65_RS05345	0.57	-0.3
1,102,028	-		DZA65_RS05345	0.57	+1.0
1,102,028	-		DZA65_RS05345	0.57	+0.8
1,102,028	-		DZA65_RS05345	0.57	+0.8
1,102,028	-		DZA65_RS05345	0.57	-0.5
1,102,028	-		DZA65_RS05345	0.57	-2.8
1,102,028	-		DZA65_RS05345	0.57	-0.6
1,102,028	-		DZA65_RS05345	0.57	-1.5
1,102,028	-		DZA65_RS05345	0.57	-0.6
1,102,028	-		DZA65_RS05345	0.57	-1.1
1,102,028	-		DZA65_RS05345	0.57	-0.7
1,102,028	-		DZA65_RS05345	0.57	+0.5
1,102,028	-		DZA65_RS05345	0.57	+0.5
1,102,029	+		DZA65_RS05345	0.57	+0.9
1,102,029	+		DZA65_RS05345	0.57	+0.7
1,102,030	-		DZA65_RS05345	0.57	-1.2
1,102,067	+		DZA65_RS05345	0.60	-1.1
1,102,067	+		DZA65_RS05345	0.60	-0.5
1,102,068	-		DZA65_RS05345	0.60	-0.7
1,102,204	+		DZA65_RS05345	0.71	+0.5
1,102,374	+		DZA65_RS05345	0.85	+2.3
1,102,452	+				-1.9
1,102,540	+				-1.8
1,102,540	+				+2.5
1,102,540	+				-0.2
1,102,541	-				+0.2
1,102,561	+				+0.5
1,102,578	-				-0.3
1,102,578	-				+0.2
1,102,578	-				+0.1
1,102,615	-				+0.3
1,102,638	+				+1.0
1,102,638	+				-2.5
1,102,638	+				+0.5
1,102,638	+				-1.1
1,102,639	-				+0.0
1,102,639	-				-0.8
1,102,639	-				-0.2
1,102,639	-				+0.4
1,102,639	-				-1.1
1,102,642	+				+0.2
1,102,642	+				-0.6
1,102,642	+				-1.5
1,102,643	-				-1.1
1,102,643	-				+0.6
1,102,643	-				+0.3
1,102,643	-				-1.8
1,102,643	-				+0.2
1,102,740	+				+0.2
1,102,740	+				+0.5
1,102,741	-				-0.1
1,102,741	-				+0.8
1,102,741	-				+1.5
1,102,751	+				-0.2
1,102,751	+				+1.4
1,102,752	-				+1.5
1,102,752	-				-0.1
1,102,853	-				-1.1
1,102,898	-				-1.2
1,103,068	+				-1.3
1,103,068	+				+2.3
1,103,068	+				-0.6
1,103,068	+				-0.5
1,103,068	+				+1.9
1,103,068	+				-1.7
1,103,068	+				+0.7
1,103,068	+				+1.5
1,103,068	+				-2.4
1,103,069	-				+0.8
1,103,069	-				-1.3
1,103,069	-				+0.2
1,103,069	-				-0.3
1,103,140	+				-0.5
1,103,140	+				+0.7
1,103,140	+				+1.1
1,103,141	-				+0.8
1,103,141	-				+1.5
1,103,141	-				-3.1
1,103,141	-				+0.9
1,103,141	-				-0.1
1,103,141	-				-1.5
1,103,141	-				-2.7
1,103,142	+				+0.5
1,103,142	+				-1.1
1,103,142	+				+0.7
1,103,142	+				+0.3
1,103,142	+				+1.5
1,103,142	+				-1.1
1,103,142	+				+0.6
1,103,142	+				-0.3
1,103,142	+				+3.5
1,103,142	+				-0.3
1,103,142	+				+1.5
1,103,142	+				-0.8
1,103,142	+				+0.1
1,103,142	+				+0.8
1,103,142	+				-1.2
1,103,142	+				-0.6
1,103,143	-				-0.1
1,103,143	-				-1.1
1,103,143	-				+2.2
1,103,143	-				-1.8
1,103,143	-				-1.1
1,103,143	-				+0.2
1,103,143	-				-0.4
1,103,143	-				-1.7
1,103,143	-				+0.3
1,103,143	-				-0.6
1,103,143	-				+0.2
1,103,143	-				-0.5
1,103,143	-				-1.3
1,103,143	-				-0.1
1,103,177	+		DZA65_RS05360	0.11	+0.7
1,103,178	-		DZA65_RS05360	0.11	+0.0
1,103,178	-		DZA65_RS05360	0.11	-1.5
1,103,266	+		DZA65_RS05360	0.19	+0.5
1,103,266	+		DZA65_RS05360	0.19	+0.9
1,103,275	-		DZA65_RS05360	0.20	-2.1
1,103,301	+		DZA65_RS05360	0.22	-0.1
1,103,400	+		DZA65_RS05360	0.31	-0.3
1,103,410	+		DZA65_RS05360	0.31	+0.3
1,103,410	+		DZA65_RS05360	0.31	+0.2
1,103,410	+		DZA65_RS05360	0.31	+0.1
1,103,410	+		DZA65_RS05360	0.31	-1.9
1,103,410	+		DZA65_RS05360	0.31	+0.3
1,103,410	+		DZA65_RS05360	0.31	+1.5
1,103,410	+		DZA65_RS05360	0.31	-1.5
1,103,410	+		DZA65_RS05360	0.31	+0.2
1,103,410	+		DZA65_RS05360	0.31	+0.2
1,103,411	-		DZA65_RS05360	0.32	-0.8
1,103,411	-		DZA65_RS05360	0.32	+0.5
1,103,411	-		DZA65_RS05360	0.32	+0.9
1,103,411	-		DZA65_RS05360	0.32	-0.5
1,103,411	-		DZA65_RS05360	0.32	-1.4
1,103,411	-		DZA65_RS05360	0.32	+0.5
1,103,411	-		DZA65_RS05360	0.32	-0.2
1,103,411	-		DZA65_RS05360	0.32	+0.3
1,103,411	-		DZA65_RS05360	0.32	+0.8
1,103,411	-		DZA65_RS05360	0.32	+0.2
1,103,411	-		DZA65_RS05360	0.32	-0.4
1,103,467	+		DZA65_RS05360	0.36	+0.1
1,103,467	+		DZA65_RS05360	0.36	+1.5
1,103,468	-		DZA65_RS05360	0.36	-1.1
1,103,468	-		DZA65_RS05360	0.36	-1.9
1,103,468	-		DZA65_RS05360	0.36	+1.0
1,103,468	-		DZA65_RS05360	0.36	+1.5
1,103,468	-		DZA65_RS05360	0.36	-0.5
1,103,521	+		DZA65_RS05360	0.41	-0.8
1,103,521	+				+0.5
1,103,521	+		DZA65_RS05360	0.41	-0.3
1,103,521	+		DZA65_RS05360	0.41	+0.7
1,103,521	+		DZA65_RS05360	0.41	+0.2
1,103,522	-		DZA65_RS05360	0.41	-0.1
1,103,522	-		DZA65_RS05360	0.41	+0.7
1,103,522	-		DZA65_RS05360	0.41	+0.4