Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05330

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,095,275	-				-0.0
1,095,299	+				-2.5
1,095,449	-		DZA65_RS05320	0.32	-0.3
1,095,555	+		DZA65_RS05320	0.49	-0.9
1,095,555	+		DZA65_RS05320	0.49	+1.5
1,095,555	+		DZA65_RS05320	0.49	-1.5
1,095,555	+		DZA65_RS05320	0.49	+0.1
1,095,555	+		DZA65_RS05320	0.49	-0.2
1,095,556	-		DZA65_RS05320	0.50	+0.5
1,095,556	-		DZA65_RS05320	0.50	-0.5
1,095,556	-		DZA65_RS05320	0.50	-0.3
1,095,618	+		DZA65_RS05320	0.60	-0.5
1,095,618	+		DZA65_RS05320	0.60	-1.3
1,095,618	+		DZA65_RS05320	0.60	-1.6
1,095,769	+		DZA65_RS05320	0.86	+0.5
1,095,784	-		DZA65_RS05320	0.88	+1.1
1,095,822	-				-0.1
1,095,852	+				+0.5
1,095,872	+				-0.8
1,095,872	+				+0.8
1,095,872	+				-0.2
1,095,872	+				-1.2
1,095,872	+				-2.2
1,095,872	+				+1.2
1,095,873	-				+2.0
1,095,873	-				-0.5
1,095,873	-				-0.5
1,095,873	-				-1.5
1,095,911	+				-1.0
1,095,911	+				-0.1
1,095,911	+				+0.5
1,095,926	+				-1.2
1,095,926	+				+0.3
1,095,927	-		DZA65_RS05325	0.10	-0.6
1,096,082	+		DZA65_RS05325	0.48	-1.3
1,096,083	-		DZA65_RS05325	0.49	-0.8
1,096,124	+		DZA65_RS05325	0.59	+0.0
1,096,125	-		DZA65_RS05325	0.59	+0.4
1,096,125	-		DZA65_RS05325	0.59	-1.3
1,096,174	+		DZA65_RS05325	0.71	+0.2
1,096,174	+		DZA65_RS05325	0.71	+0.5
1,096,174	+		DZA65_RS05325	0.71	+0.2
1,096,175	-		DZA65_RS05325	0.71	-1.5
1,096,353	+		DZA65_RS05330	0.24	-0.1
1,096,353	+		DZA65_RS05330	0.24	-0.2
1,096,377	+		DZA65_RS05330	0.30	-1.6
1,096,377	+		DZA65_RS05330	0.30	-0.8
1,096,378	-		DZA65_RS05330	0.30	-2.2
1,096,378	-		DZA65_RS05330	0.30	-0.8
1,096,378	-		DZA65_RS05330	0.30	+0.3
1,096,378	-		DZA65_RS05330	0.30	-1.1
1,096,385	+		DZA65_RS05330	0.32	-0.5
1,096,385	+		DZA65_RS05330	0.32	-1.1
1,096,385	+		DZA65_RS05330	0.32	-0.8
1,096,385	+		DZA65_RS05330	0.32	+0.3
1,096,386	-		DZA65_RS05330	0.32	-0.4
1,096,396	-		DZA65_RS05330	0.35	-1.1
1,096,396	-		DZA65_RS05330	0.35	-0.6
1,096,658	+				+0.1
1,096,658	+				-0.4
1,096,659	-				-0.0
1,096,668	+				+1.3
1,096,668	+				+0.1
1,096,668	+				-2.1
1,096,669	-				-1.1
1,096,678	+				-1.9
1,096,678	+				-0.1
1,096,678	+				-1.5
1,096,678	+				-1.4
1,096,678	+				-1.2
1,096,678	+				-1.5
1,096,678	+				-0.5
1,096,679	-				+0.9
1,096,679	-				-0.8
1,096,679	-				+0.3
1,096,679	-				+0.5
1,096,679	-				+0.2
1,096,714	+				-0.3
1,096,714	+				-1.1
1,096,714	+				-1.3
1,096,797	+				-0.8
1,096,826	+				-0.8
1,096,826	+				-1.1
1,096,852	+				+1.9
1,096,853	-				-0.5
1,096,876	+				-0.2
1,096,961	+				+0.1
1,097,085	-		DZA65_RS05335	0.13	-2.8
1,097,247	+		DZA65_RS05335	0.19	-1.5
1,097,247	+				-0.5
1,097,248	-		DZA65_RS05335	0.19	-1.6
1,097,321	-		DZA65_RS05335	0.21	-0.4
1,097,332	+		DZA65_RS05335	0.22	-0.1
1,097,333	-		DZA65_RS05335	0.22	-0.7
1,097,360	+		DZA65_RS05335	0.23	+1.5
1,097,361	-		DZA65_RS05335	0.23	-1.4
1,097,361	-		DZA65_RS05335	0.23	-0.8
1,097,369	+		DZA65_RS05335	0.23	+1.5
1,097,369	+		DZA65_RS05335	0.23	-0.8
1,097,372	+		DZA65_RS05335	0.23	-0.8
1,097,402	+		DZA65_RS05335	0.24	-0.8
1,097,402	+		DZA65_RS05335	0.24	+1.1
1,097,464	+		DZA65_RS05335	0.26	+1.2
1,097,464	+		DZA65_RS05335	0.26	+1.7
1,097,464	+		DZA65_RS05335	0.26	+1.0
1,097,464	+		DZA65_RS05335	0.26	+0.2
1,097,464	+		DZA65_RS05335	0.26	-0.3
1,097,491	+		DZA65_RS05335	0.27	-1.1
1,097,537	+		DZA65_RS05335	0.29	-0.5
1,097,537	+		DZA65_RS05335	0.29	+0.2
1,097,537	+		DZA65_RS05335	0.29	-0.8
1,097,537	+		DZA65_RS05335	0.29	-0.6
1,097,537	+		DZA65_RS05335	0.29	+0.2
1,097,537	+		DZA65_RS05335	0.29	-1.2
1,097,537	+		DZA65_RS05335	0.29	+1.8
1,097,538	-		DZA65_RS05335	0.29	-0.1
1,097,538	-		DZA65_RS05335	0.29	-0.1
1,097,538	-		DZA65_RS05335	0.29	-1.1
1,097,538	-		DZA65_RS05335	0.29	-1.8
1,097,538	-		DZA65_RS05335	0.29	+1.1
1,097,538	-		DZA65_RS05335	0.29	-0.8
1,097,538	-		DZA65_RS05335	0.29	+1.5
1,097,538	-		DZA65_RS05335	0.29	+0.8
1,097,620	+		DZA65_RS05335	0.32	-1.3
1,097,624	+		DZA65_RS05335	0.32	-0.5
1,097,624	+		DZA65_RS05335	0.32	+1.5
1,097,624	+		DZA65_RS05335	0.32	+0.2
1,097,624	+		DZA65_RS05335	0.32	-0.6
1,097,624	+		DZA65_RS05335	0.32	-0.5
1,097,624	+		DZA65_RS05335	0.32	-1.3
1,097,624	+		DZA65_RS05335	0.32	-0.6
1,097,624	+		DZA65_RS05335	0.32	-1.5
1,097,624	+		DZA65_RS05335	0.32	+0.9
1,097,624	+		DZA65_RS05335	0.32	+0.5
1,097,624	+		DZA65_RS05335	0.32	-1.6
1,097,624	+		DZA65_RS05335	0.32	-2.4
1,097,624	+		DZA65_RS05335	0.32	+0.7
1,097,624	+		DZA65_RS05335	0.32	-1.1
1,097,624	+		DZA65_RS05335	0.32	-1.8
1,097,624	+		DZA65_RS05335	0.32	-0.8
1,097,624	+		DZA65_RS05335	0.32	-0.2
1,097,624	+		DZA65_RS05335	0.32	-1.5
1,097,624	+		DZA65_RS05335	0.32	-1.1
1,097,624	+		DZA65_RS05335	0.32	-0.3
1,097,624	+		DZA65_RS05335	0.32	-3.6
1,097,625	-		DZA65_RS05335	0.32	-0.2
1,097,625	-		DZA65_RS05335	0.32	+1.8
1,097,625	-		DZA65_RS05335	0.32	-0.5
1,097,625	-		DZA65_RS05335	0.32	+0.4
1,097,625	-		DZA65_RS05335	0.32	+0.5
1,097,625	-		DZA65_RS05335	0.32	-1.8
1,097,625	-				-0.1
1,097,625	-		DZA65_RS05335	0.32	+1.2
1,097,625	-		DZA65_RS05335	0.32	+0.2
1,097,625	-		DZA65_RS05335	0.32	-2.1
1,097,625	-		DZA65_RS05335	0.32	-2.5
1,097,625	-		DZA65_RS05335	0.32	+0.4
1,097,629	+		DZA65_RS05335	0.32	-2.1
1,097,629	+		DZA65_RS05335	0.32	-0.8
1,097,629	+		DZA65_RS05335	0.32	-0.6
1,097,629	+		DZA65_RS05335	0.32	-1.5
1,097,629	+		DZA65_RS05335	0.32	+0.4
1,097,629	+		DZA65_RS05335	0.32	+1.5
1,097,629	+		DZA65_RS05335	0.32	-0.6
1,097,629	+		DZA65_RS05335	0.32	-0.6
1,097,630	-		DZA65_RS05335	0.32	-1.3
1,097,630	-		DZA65_RS05335	0.32	-0.1
1,097,630	-		DZA65_RS05335	0.32	+1.2
1,097,630	-		DZA65_RS05335	0.32	+1.5
1,097,633	+		DZA65_RS05335	0.32	+0.4
1,097,633	+		DZA65_RS05335	0.32	-2.7
1,097,634	-		DZA65_RS05335	0.32	-0.2
1,097,634	-		DZA65_RS05335	0.32	-1.3