Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04515 and DZA65_RS04520 are separated by 337 nucleotides DZA65_RS04520 and DZA65_RS04525 are separated by 117 nucleotides DZA65_RS04525 and DZA65_RS04530 are separated by 121 nucleotides
DZA65_RS04515: DZA65_RS04515 - multidrug efflux MFS transporter, at 941,165 to 942,358
_RS04515
DZA65_RS04520: DZA65_RS04520 - stress response protein AzuC, at 942,696 to 942,779
_RS04520
DZA65_RS04525: DZA65_RS04525 - tartrate dehydrogenase, at 942,897 to 943,982
_RS04525
DZA65_RS04530: DZA65_RS04530 - LysR family transcriptional regulator, at 944,104 to 945,060
_RS04530
Position (kb) 942
943
944 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 941.912 kb on + strand, within DZA65_RS04515 at 942.001 kb on + strand, within DZA65_RS04515 at 942.002 kb on - strand, within DZA65_RS04515 at 942.015 kb on + strand, within DZA65_RS04515 at 942.016 kb on - strand, within DZA65_RS04515 at 942.050 kb on - strand, within DZA65_RS04515 at 942.050 kb on - strand, within DZA65_RS04515 at 942.083 kb on + strand, within DZA65_RS04515 at 942.083 kb on + strand, within DZA65_RS04515 at 942.084 kb on - strand, within DZA65_RS04515 at 942.084 kb on - strand, within DZA65_RS04515 at 942.084 kb on - strand, within DZA65_RS04515 at 942.264 kb on + strand at 942.264 kb on + strand at 942.264 kb on + strand at 942.264 kb on + strand at 942.264 kb on + strand at 942.264 kb on + strand at 942.264 kb on + strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.285 kb on - strand at 942.358 kb on + strand at 942.370 kb on + strand at 942.371 kb on - strand at 942.421 kb on + strand at 942.434 kb on + strand at 942.434 kb on + strand at 942.435 kb on - strand at 942.438 kb on - strand at 942.465 kb on + strand at 942.471 kb on + strand at 942.473 kb on + strand at 942.486 kb on - strand at 942.547 kb on + strand at 942.547 kb on + strand at 942.547 kb on + strand at 942.548 kb on - strand at 942.556 kb on + strand at 942.556 kb on + strand at 942.557 kb on - strand at 942.557 kb on - strand at 942.557 kb on - strand at 942.571 kb on + strand at 942.678 kb on - strand at 942.678 kb on - strand at 942.678 kb on - strand at 942.678 kb on - strand at 942.707 kb on + strand, within DZA65_RS04520 at 942.707 kb on + strand, within DZA65_RS04520 at 942.735 kb on + strand, within DZA65_RS04520 at 942.735 kb on + strand, within DZA65_RS04520 at 942.735 kb on + strand, within DZA65_RS04520 at 942.736 kb on - strand, within DZA65_RS04520 at 942.736 kb on - strand, within DZA65_RS04520 at 942.736 kb on - strand, within DZA65_RS04520 at 942.747 kb on + strand, within DZA65_RS04520 at 942.748 kb on - strand, within DZA65_RS04520 at 942.748 kb on - strand, within DZA65_RS04520 at 942.777 kb on + strand at 942.777 kb on + strand at 942.777 kb on + strand at 942.778 kb on - strand at 942.778 kb on - strand at 942.778 kb on - strand at 942.778 kb on - strand at 942.778 kb on - strand at 942.778 kb on - strand at 942.785 kb on + strand at 942.786 kb on - strand at 942.799 kb on + strand at 942.799 kb on + strand at 942.800 kb on - strand at 942.802 kb on + strand at 942.802 kb on + strand at 942.802 kb on + strand at 942.802 kb on + strand at 942.803 kb on - strand at 942.803 kb on - strand at 942.803 kb on - strand at 942.803 kb on - strand at 942.806 kb on - strand at 942.806 kb on - strand at 942.823 kb on - strand at 942.851 kb on - strand at 942.864 kb on + strand at 942.864 kb on + strand at 942.865 kb on - strand at 942.892 kb on + strand at 942.892 kb on + strand at 942.892 kb on + strand at 942.893 kb on - strand at 942.893 kb on - strand at 942.893 kb on - strand at 942.893 kb on - strand at 942.906 kb on + strand at 942.906 kb on + strand at 942.906 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.941 kb on + strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 942.942 kb on - strand at 943.017 kb on + strand, within DZA65_RS04525 at 943.018 kb on - strand, within DZA65_RS04525 at 943.018 kb on - strand, within DZA65_RS04525 at 943.307 kb on + strand, within DZA65_RS04525 at 943.313 kb on + strand, within DZA65_RS04525 at 943.314 kb on - strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.318 kb on + strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.319 kb on - strand, within DZA65_RS04525 at 943.379 kb on - strand, within DZA65_RS04525 at 943.561 kb on + strand, within DZA65_RS04525 at 943.591 kb on + strand, within DZA65_RS04525 at 943.591 kb on + strand, within DZA65_RS04525 at 943.672 kb on + strand, within DZA65_RS04525 at 943.672 kb on + strand, within DZA65_RS04525 at 943.673 kb on - strand, within DZA65_RS04525 at 943.673 kb on - strand, within DZA65_RS04525 at 943.673 kb on - strand, within DZA65_RS04525 at 943.762 kb on + strand, within DZA65_RS04525 at 943.762 kb on + strand, within DZA65_RS04525 at 943.762 kb on + strand, within DZA65_RS04525 at 943.762 kb on + strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.763 kb on - strand, within DZA65_RS04525 at 943.828 kb on + strand, within DZA65_RS04525 at 943.828 kb on + strand, within DZA65_RS04525 at 943.829 kb on - strand, within DZA65_RS04525 at 943.829 kb on - strand, within DZA65_RS04525 at 943.831 kb on + strand, within DZA65_RS04525 at 943.831 kb on + strand, within DZA65_RS04525 at 943.832 kb on - strand, within DZA65_RS04525 at 943.832 kb on - strand, within DZA65_RS04525 at 943.908 kb on + strand at 943.909 kb on - strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.035 kb on + strand at 944.036 kb on - strand at 944.036 kb on - strand at 944.036 kb on - strand at 944.039 kb on + strand at 944.039 kb on + strand at 944.039 kb on + strand at 944.040 kb on - strand at 944.040 kb on - strand at 944.140 kb on - strand at 944.140 kb on - strand at 944.240 kb on + strand, within DZA65_RS04530 at 944.256 kb on + strand, within DZA65_RS04530 at 944.256 kb on + strand, within DZA65_RS04530 at 944.296 kb on + strand, within DZA65_RS04530 at 944.296 kb on + strand, within DZA65_RS04530 at 944.297 kb on - strand, within DZA65_RS04530 at 944.351 kb on + strand, within DZA65_RS04530 at 944.351 kb on + strand, within DZA65_RS04530 at 944.352 kb on - strand, within DZA65_RS04530 at 944.421 kb on + strand, within DZA65_RS04530 at 944.421 kb on + strand, within DZA65_RS04530 at 944.421 kb on + strand, within DZA65_RS04530 at 944.421 kb on + strand at 944.484 kb on + strand, within DZA65_RS04530 at 944.484 kb on + strand, within DZA65_RS04530 at 944.484 kb on + strand, within DZA65_RS04530 at 944.485 kb on - strand, within DZA65_RS04530 at 944.485 kb on - strand, within DZA65_RS04530 at 944.485 kb on - strand, within DZA65_RS04530 at 944.614 kb on + strand, within DZA65_RS04530 at 944.686 kb on + strand, within DZA65_RS04530 at 944.687 kb on - strand, within DZA65_RS04530 at 944.687 kb on - strand, within DZA65_RS04530 at 944.717 kb on - strand, within DZA65_RS04530 at 944.736 kb on + strand, within DZA65_RS04530 at 944.815 kb on - strand, within DZA65_RS04530 at 944.884 kb on + strand, within DZA65_RS04530 at 944.884 kb on + strand, within DZA65_RS04530 at 944.884 kb on + strand, within DZA65_RS04530 at 944.885 kb on - strand, within DZA65_RS04530 at 944.885 kb on - strand, within DZA65_RS04530 at 944.908 kb on + strand, within DZA65_RS04530 at 944.908 kb on + strand, within DZA65_RS04530 at 944.908 kb on + strand, within DZA65_RS04530 at 944.908 kb on + strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.909 kb on - strand, within DZA65_RS04530 at 944.917 kb on + strand, within DZA65_RS04530 at 944.918 kb on - strand, within DZA65_RS04530 at 944.918 kb on - strand, within DZA65_RS04530
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 941,912 + DZA65_RS04515 0.63 +1.9 942,001 + DZA65_RS04515 0.70 +0.3 942,002 - DZA65_RS04515 0.70 -0.5 942,015 + DZA65_RS04515 0.71 +0.5 942,016 - DZA65_RS04515 0.71 +0.5 942,050 - DZA65_RS04515 0.74 -0.5 942,050 - DZA65_RS04515 0.74 -1.3 942,083 + DZA65_RS04515 0.77 -0.0 942,083 + DZA65_RS04515 0.77 -0.1 942,084 - DZA65_RS04515 0.77 +1.0 942,084 - DZA65_RS04515 0.77 -0.3 942,084 - DZA65_RS04515 0.77 -0.4 942,264 + -2.6 942,264 + +0.5 942,264 + -1.0 942,264 + -0.1 942,264 + +0.4 942,264 + +0.8 942,264 + +1.5 942,265 - -0.8 942,265 - -3.1 942,265 - +0.2 942,265 - -1.5 942,265 - +2.8 942,265 - -0.5 942,265 - -0.1 942,265 - +1.5 942,265 - +1.3 942,265 - +1.2 942,265 - -0.6 942,285 - -1.3 942,358 + +0.2 942,370 + +0.5 942,371 - +0.3 942,421 + -1.0 942,434 + +0.5 942,434 + -1.7 942,435 - -0.6 942,438 - -0.1 942,465 + +1.8 942,471 + +0.1 942,473 + -0.1 942,486 - +0.2 942,547 + -1.1 942,547 + -0.5 942,547 + -1.0 942,548 - -0.1 942,556 + -1.1 942,556 + +2.7 942,557 - -0.0 942,557 - +0.3 942,557 - -1.5 942,571 + +0.9 942,678 - -1.3 942,678 - -1.3 942,678 - +2.0 942,678 - +0.0 942,707 + DZA65_RS04520 0.13 -0.5 942,707 + DZA65_RS04520 0.13 -0.8 942,735 + DZA65_RS04520 0.46 +0.5 942,735 + DZA65_RS04520 0.46 -0.4 942,735 + DZA65_RS04520 0.46 -0.5 942,736 - DZA65_RS04520 0.48 +1.6 942,736 - DZA65_RS04520 0.48 -1.6 942,736 - DZA65_RS04520 0.48 +1.3 942,747 + DZA65_RS04520 0.61 +1.2 942,748 - DZA65_RS04520 0.62 +0.9 942,748 - DZA65_RS04520 0.62 -0.4 942,777 + -1.1 942,777 + -0.5 942,777 + -1.5 942,778 - +0.3 942,778 - +0.2 942,778 - -2.3 942,778 - -0.5 942,778 - +1.6 942,778 - +1.2 942,785 + +1.5 942,786 - -2.1 942,799 + -0.7 942,799 + +1.6 942,800 - -1.3 942,802 + +0.5 942,802 + -0.2 942,802 + -1.1 942,802 + -0.9 942,803 - -0.1 942,803 - -1.2 942,803 - +0.3 942,803 - -1.1 942,806 - +0.6 942,806 - -0.6 942,823 - -0.2 942,851 - +1.1 942,864 + +0.4 942,864 + -1.8 942,865 - +0.1 942,892 + -1.1 942,892 + -0.3 942,892 + -1.6 942,893 - -0.9 942,893 - -2.2 942,893 - +1.3 942,893 - +0.7 942,906 + -1.1 942,906 + -0.3 942,906 + -1.3 942,941 + -1.0 942,941 + -0.6 942,941 + -0.7 942,941 + -1.7 942,941 + +1.2 942,941 + -1.3 942,941 + -1.8 942,941 + +1.0 942,942 - -2.2 942,942 - -0.8 942,942 - -2.5 942,942 - +1.8 942,942 - -0.1 942,942 - +0.9 942,942 - -0.1 942,942 - -0.0 942,942 - +0.0 942,942 - -1.2 942,942 - -0.7 942,942 - -1.3 942,942 - +1.1 942,942 - +0.4 943,017 + DZA65_RS04525 0.11 -0.5 943,018 - DZA65_RS04525 0.11 +0.5 943,018 - DZA65_RS04525 0.11 +1.8 943,307 + DZA65_RS04525 0.38 +0.3 943,313 + DZA65_RS04525 0.38 -0.1 943,314 - DZA65_RS04525 0.38 -0.8 943,318 + DZA65_RS04525 0.39 +0.9 943,318 + DZA65_RS04525 0.39 +0.4 943,318 + DZA65_RS04525 0.39 -1.3 943,318 + DZA65_RS04525 0.39 -1.1 943,318 + DZA65_RS04525 0.39 -1.3 943,318 + DZA65_RS04525 0.39 -0.5 943,318 + DZA65_RS04525 0.39 +0.9 943,318 + DZA65_RS04525 0.39 -0.4 943,318 + DZA65_RS04525 0.39 +0.5 943,319 - DZA65_RS04525 0.39 -1.1 943,319 - DZA65_RS04525 0.39 -0.2 943,319 - -0.5 943,319 - DZA65_RS04525 0.39 +1.2 943,319 - DZA65_RS04525 0.39 +1.3 943,319 - DZA65_RS04525 0.39 +2.0 943,319 - DZA65_RS04525 0.39 -0.1 943,379 - DZA65_RS04525 0.44 -0.5 943,561 + DZA65_RS04525 0.61 +0.5 943,591 + DZA65_RS04525 0.64 -0.5 943,591 + DZA65_RS04525 0.64 -1.7 943,672 + DZA65_RS04525 0.71 +0.8 943,672 + DZA65_RS04525 0.71 -0.1 943,673 - DZA65_RS04525 0.71 +2.1 943,673 - DZA65_RS04525 0.71 -0.2 943,673 - DZA65_RS04525 0.71 -0.5 943,762 + DZA65_RS04525 0.80 -0.7 943,762 + DZA65_RS04525 0.80 -0.9 943,762 + DZA65_RS04525 0.80 -0.5 943,762 + DZA65_RS04525 0.80 +0.8 943,763 - DZA65_RS04525 0.80 -1.1 943,763 - DZA65_RS04525 0.80 -1.7 943,763 - DZA65_RS04525 0.80 +1.3 943,763 - DZA65_RS04525 0.80 -0.4 943,763 - DZA65_RS04525 0.80 +0.2 943,828 + DZA65_RS04525 0.86 -0.1 943,828 + DZA65_RS04525 0.86 +0.1 943,829 - DZA65_RS04525 0.86 -0.8 943,829 - DZA65_RS04525 0.86 -0.1 943,831 + DZA65_RS04525 0.86 +1.1 943,831 + DZA65_RS04525 0.86 -0.5 943,832 - DZA65_RS04525 0.86 -1.1 943,832 - DZA65_RS04525 0.86 -1.1 943,908 + +0.5 943,909 - +1.2 944,035 + -1.7 944,035 + -0.8 944,035 + +0.1 944,035 + -0.6 944,035 + +0.2 944,035 + +0.4 944,035 + -0.1 944,035 + -1.3 944,035 + -1.8 944,036 - -2.0 944,036 - +0.2 944,036 - -0.1 944,039 + -0.1 944,039 + -0.1 944,039 + -1.1 944,040 - -1.0 944,040 - -1.5 944,140 - -0.7 944,140 - -1.8 944,240 + DZA65_RS04530 0.14 -1.2 944,256 + DZA65_RS04530 0.16 -1.3 944,256 + DZA65_RS04530 0.16 -0.5 944,296 + DZA65_RS04530 0.20 -0.8 944,296 + DZA65_RS04530 0.20 -0.1 944,297 - DZA65_RS04530 0.20 -1.3 944,351 + DZA65_RS04530 0.26 -0.1 944,351 + DZA65_RS04530 0.26 -1.1 944,352 - DZA65_RS04530 0.26 -0.5 944,421 + DZA65_RS04530 0.33 +0.5 944,421 + DZA65_RS04530 0.33 -0.0 944,421 + DZA65_RS04530 0.33 +0.5 944,421 + +0.5 944,484 + DZA65_RS04530 0.40 -0.9 944,484 + DZA65_RS04530 0.40 -2.4 944,484 + DZA65_RS04530 0.40 -1.1 944,485 - DZA65_RS04530 0.40 +0.0 944,485 - DZA65_RS04530 0.40 +0.9 944,485 - DZA65_RS04530 0.40 -1.1 944,614 + DZA65_RS04530 0.53 +1.1 944,686 + DZA65_RS04530 0.61 -1.3 944,687 - DZA65_RS04530 0.61 +1.5 944,687 - DZA65_RS04530 0.61 -0.5 944,717 - DZA65_RS04530 0.64 +0.2 944,736 + DZA65_RS04530 0.66 +0.7 944,815 - DZA65_RS04530 0.74 +0.5 944,884 + DZA65_RS04530 0.82 -0.6 944,884 + DZA65_RS04530 0.82 +1.2 944,884 + DZA65_RS04530 0.82 +0.7 944,885 - DZA65_RS04530 0.82 +0.0 944,885 - DZA65_RS04530 0.82 -1.5 944,908 + DZA65_RS04530 0.84 -1.8 944,908 + DZA65_RS04530 0.84 -0.8 944,908 + DZA65_RS04530 0.84 +0.3 944,908 + DZA65_RS04530 0.84 +0.0 944,909 - DZA65_RS04530 0.84 -0.5 944,909 - DZA65_RS04530 0.84 -1.3 944,909 - DZA65_RS04530 0.84 -1.8 944,909 - DZA65_RS04530 0.84 +1.5 944,909 - DZA65_RS04530 0.84 +0.5 944,909 - DZA65_RS04530 0.84 -0.2 944,909 - DZA65_RS04530 0.84 -0.5 944,909 - DZA65_RS04530 0.84 -0.7 944,909 - DZA65_RS04530 0.84 -1.7 944,909 - DZA65_RS04530 0.84 -2.5 944,909 - DZA65_RS04530 0.84 -1.5 944,917 + DZA65_RS04530 0.85 -1.3 944,918 - DZA65_RS04530 0.85 -2.6 944,918 - DZA65_RS04530 0.85 -0.1
Or see this region's nucleotide sequence