Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04455 and DZA65_RS04460 are separated by 2 nucleotides DZA65_RS04460 and DZA65_RS04465 overlap by 8 nucleotides DZA65_RS04465 and DZA65_RS04475 are separated by 865 nucleotides
DZA65_RS04455: DZA65_RS04455 - MFS transporter, at 929,128 to 930,507
_RS04455
DZA65_RS04460: DZA65_RS04460 - cytochrome c nitrite reductase subunit NrfD, at 930,510 to 931,466
_RS04460
DZA65_RS04465: DZA65_RS04465 - 4Fe-4S dicluster domain-containing protein, at 931,459 to 932,157
_RS04465
DZA65_RS04475: DZA65_RS04475 - alpha/beta hydrolase, at 933,023 to 933,997
_RS04475
Position (kb) 931
932
933 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 930.459 kb on + strand at 930.535 kb on + strand at 930.536 kb on - strand at 930.536 kb on - strand at 930.536 kb on - strand at 930.561 kb on + strand at 930.561 kb on + strand at 930.561 kb on + strand at 930.561 kb on + strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.601 kb on + strand at 930.602 kb on - strand at 930.656 kb on + strand, within DZA65_RS04460 at 930.657 kb on - strand, within DZA65_RS04460 at 930.672 kb on - strand, within DZA65_RS04460 at 930.672 kb on - strand, within DZA65_RS04460 at 930.792 kb on + strand, within DZA65_RS04460 at 930.793 kb on - strand, within DZA65_RS04460 at 930.793 kb on - strand, within DZA65_RS04460 at 930.980 kb on + strand, within DZA65_RS04460 at 930.980 kb on + strand, within DZA65_RS04460 at 930.982 kb on + strand, within DZA65_RS04460 at 930.982 kb on + strand, within DZA65_RS04460 at 930.982 kb on + strand, within DZA65_RS04460 at 930.983 kb on - strand, within DZA65_RS04460 at 931.035 kb on - strand, within DZA65_RS04460 at 931.035 kb on - strand, within DZA65_RS04460 at 931.056 kb on + strand, within DZA65_RS04460 at 931.056 kb on + strand, within DZA65_RS04460 at 931.127 kb on - strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.211 kb on - strand, within DZA65_RS04460 at 931.211 kb on - strand, within DZA65_RS04460 at 931.211 kb on - strand, within DZA65_RS04460 at 931.225 kb on + strand, within DZA65_RS04460 at 931.226 kb on - strand, within DZA65_RS04460 at 931.226 kb on - strand, within DZA65_RS04460 at 931.226 kb on - strand, within DZA65_RS04460 at 931.226 kb on - strand, within DZA65_RS04460 at 931.278 kb on + strand, within DZA65_RS04460 at 931.328 kb on + strand, within DZA65_RS04460 at 931.328 kb on + strand, within DZA65_RS04460 at 931.328 kb on + strand, within DZA65_RS04460 at 931.328 kb on + strand, within DZA65_RS04460 at 931.329 kb on - strand, within DZA65_RS04460 at 931.329 kb on - strand, within DZA65_RS04460 at 931.329 kb on - strand, within DZA65_RS04460 at 931.351 kb on + strand, within DZA65_RS04460 at 931.411 kb on + strand at 931.411 kb on + strand at 931.412 kb on - strand at 931.412 kb on - strand at 931.434 kb on + strand at 931.481 kb on + strand at 931.482 kb on - strand at 931.523 kb on + strand at 931.523 kb on + strand at 931.538 kb on + strand, within DZA65_RS04465 at 931.539 kb on - strand, within DZA65_RS04465 at 931.539 kb on - strand, within DZA65_RS04465 at 931.539 kb on - strand, within DZA65_RS04465 at 931.539 kb on - strand, within DZA65_RS04465 at 931.542 kb on + strand, within DZA65_RS04465 at 931.542 kb on + strand, within DZA65_RS04465 at 931.542 kb on + strand, within DZA65_RS04465 at 931.543 kb on - strand, within DZA65_RS04465 at 931.543 kb on - strand, within DZA65_RS04465 at 931.543 kb on - strand, within DZA65_RS04465 at 931.543 kb on - strand, within DZA65_RS04465 at 931.543 kb on - strand, within DZA65_RS04465 at 931.543 kb on - strand, within DZA65_RS04465 at 931.588 kb on - strand, within DZA65_RS04465 at 931.677 kb on + strand, within DZA65_RS04465 at 931.677 kb on + strand, within DZA65_RS04465 at 931.678 kb on - strand, within DZA65_RS04465 at 931.678 kb on - strand, within DZA65_RS04465 at 931.678 kb on - strand, within DZA65_RS04465 at 931.683 kb on + strand, within DZA65_RS04465 at 931.683 kb on + strand, within DZA65_RS04465 at 931.684 kb on - strand, within DZA65_RS04465 at 931.684 kb on - strand, within DZA65_RS04465 at 931.684 kb on - strand, within DZA65_RS04465 at 931.710 kb on + strand, within DZA65_RS04465 at 931.710 kb on + strand, within DZA65_RS04465 at 931.724 kb on + strand, within DZA65_RS04465 at 931.745 kb on + strand, within DZA65_RS04465 at 931.890 kb on + strand, within DZA65_RS04465 at 931.890 kb on + strand, within DZA65_RS04465 at 931.891 kb on - strand, within DZA65_RS04465 at 931.924 kb on + strand, within DZA65_RS04465 at 931.924 kb on + strand, within DZA65_RS04465 at 931.924 kb on + strand, within DZA65_RS04465 at 931.924 kb on + strand, within DZA65_RS04465 at 931.924 kb on + strand, within DZA65_RS04465 at 931.924 kb on + strand, within DZA65_RS04465 at 931.924 kb on + strand, within DZA65_RS04465 at 931.925 kb on - strand, within DZA65_RS04465 at 931.925 kb on - strand, within DZA65_RS04465 at 931.925 kb on - strand, within DZA65_RS04465 at 931.925 kb on - strand, within DZA65_RS04465 at 931.925 kb on - strand, within DZA65_RS04465 at 931.925 kb on - strand, within DZA65_RS04465 at 931.925 kb on - strand, within DZA65_RS04465 at 931.925 kb on - strand, within DZA65_RS04465 at 931.925 kb on - strand, within DZA65_RS04465 at 931.929 kb on + strand, within DZA65_RS04465 at 931.929 kb on + strand, within DZA65_RS04465 at 931.929 kb on + strand, within DZA65_RS04465 at 932.008 kb on + strand, within DZA65_RS04465 at 932.008 kb on + strand, within DZA65_RS04465 at 932.009 kb on - strand, within DZA65_RS04465 at 932.009 kb on - strand, within DZA65_RS04465 at 932.009 kb on - strand, within DZA65_RS04465 at 932.009 kb on - strand, within DZA65_RS04465 at 932.016 kb on + strand, within DZA65_RS04465 at 932.023 kb on + strand, within DZA65_RS04465 at 932.024 kb on - strand, within DZA65_RS04465 at 932.024 kb on - strand, within DZA65_RS04465 at 932.024 kb on - strand, within DZA65_RS04465 at 932.030 kb on + strand, within DZA65_RS04465 at 932.031 kb on - strand, within DZA65_RS04465 at 932.031 kb on - strand, within DZA65_RS04465 at 932.131 kb on - strand at 932.162 kb on + strand at 932.163 kb on - strand at 932.215 kb on + strand at 932.346 kb on - strand at 932.373 kb on - strand at 932.429 kb on + strand at 932.434 kb on + strand at 932.677 kb on + strand at 932.677 kb on + strand at 932.677 kb on + strand at 932.677 kb on + strand at 932.677 kb on + strand at 932.677 kb on + strand at 932.678 kb on - strand at 932.678 kb on - strand at 932.678 kb on - strand at 932.846 kb on + strand at 932.846 kb on + strand at 932.847 kb on - strand at 932.882 kb on - strand at 932.934 kb on - strand at 932.961 kb on + strand at 932.962 kb on - strand at 932.962 kb on - strand at 932.962 kb on - strand at 932.965 kb on + strand at 932.965 kb on + strand at 932.965 kb on + strand at 932.965 kb on + strand at 932.966 kb on - strand at 932.966 kb on - strand at 932.966 kb on - strand at 932.966 kb on - strand at 932.966 kb on - strand at 932.966 kb on - strand at 932.966 kb on - strand at 932.987 kb on + strand at 933.024 kb on + strand at 933.025 kb on - strand at 933.081 kb on - strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.121 kb on - strand at 933.121 kb on - strand, within DZA65_RS04475 at 933.121 kb on - strand, within DZA65_RS04475 at 933.121 kb on - strand, within DZA65_RS04475 at 933.121 kb on - strand, within DZA65_RS04475 at 933.123 kb on + strand, within DZA65_RS04475 at 933.123 kb on + strand, within DZA65_RS04475 at 933.123 kb on + strand, within DZA65_RS04475 at 933.123 kb on + strand, within DZA65_RS04475 at 933.123 kb on + strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 930,459 + -0.7 930,535 + -1.1 930,536 - -0.8 930,536 - -0.3 930,536 - +1.8 930,561 + -0.7 930,561 + -2.7 930,561 + -1.1 930,561 + +2.5 930,562 - -0.8 930,562 - -1.7 930,562 - -0.6 930,562 - +0.3 930,562 - +0.1 930,562 - +0.2 930,562 - +0.3 930,601 + -0.7 930,602 - +0.7 930,656 + DZA65_RS04460 0.15 +0.2 930,657 - DZA65_RS04460 0.15 -1.2 930,672 - DZA65_RS04460 0.17 +1.5 930,672 - DZA65_RS04460 0.17 -0.5 930,792 + DZA65_RS04460 0.29 +0.3 930,793 - DZA65_RS04460 0.30 -0.1 930,793 - DZA65_RS04460 0.30 +0.2 930,980 + DZA65_RS04460 0.49 -1.9 930,980 + DZA65_RS04460 0.49 +0.4 930,982 + DZA65_RS04460 0.49 -0.4 930,982 + DZA65_RS04460 0.49 +2.5 930,982 + DZA65_RS04460 0.49 +1.5 930,983 - DZA65_RS04460 0.49 +0.8 931,035 - DZA65_RS04460 0.55 -1.3 931,035 - DZA65_RS04460 0.55 -0.5 931,056 + DZA65_RS04460 0.57 +0.1 931,056 + DZA65_RS04460 0.57 -0.1 931,127 - DZA65_RS04460 0.64 -0.1 931,162 + DZA65_RS04460 0.68 -2.1 931,162 + DZA65_RS04460 0.68 +0.0 931,162 + DZA65_RS04460 0.68 +0.5 931,162 + DZA65_RS04460 0.68 +0.9 931,162 + DZA65_RS04460 0.68 -0.5 931,162 + DZA65_RS04460 0.68 -0.7 931,162 + DZA65_RS04460 0.68 +1.6 931,162 + DZA65_RS04460 0.68 +0.7 931,162 + DZA65_RS04460 0.68 -0.6 931,162 + DZA65_RS04460 0.68 -0.9 931,163 - DZA65_RS04460 0.68 -0.8 931,163 - DZA65_RS04460 0.68 +0.5 931,163 - DZA65_RS04460 0.68 -0.8 931,163 - DZA65_RS04460 0.68 +1.5 931,163 - DZA65_RS04460 0.68 -1.3 931,163 - DZA65_RS04460 0.68 +0.3 931,163 - DZA65_RS04460 0.68 +0.9 931,163 - DZA65_RS04460 0.68 -0.1 931,163 - DZA65_RS04460 0.68 -0.1 931,211 - DZA65_RS04460 0.73 -0.3 931,211 - DZA65_RS04460 0.73 -0.1 931,211 - DZA65_RS04460 0.73 +0.4 931,225 + DZA65_RS04460 0.75 +2.1 931,226 - DZA65_RS04460 0.75 -1.3 931,226 - DZA65_RS04460 0.75 -0.6 931,226 - DZA65_RS04460 0.75 -0.1 931,226 - DZA65_RS04460 0.75 -0.5 931,278 + DZA65_RS04460 0.80 +0.4 931,328 + DZA65_RS04460 0.85 -0.2 931,328 + DZA65_RS04460 0.85 +1.2 931,328 + DZA65_RS04460 0.85 -2.1 931,328 + DZA65_RS04460 0.85 +0.2 931,329 - DZA65_RS04460 0.86 -0.8 931,329 - DZA65_RS04460 0.86 +0.6 931,329 - DZA65_RS04460 0.86 -0.4 931,351 + DZA65_RS04460 0.88 +0.3 931,411 + -0.9 931,411 + -0.9 931,412 - +0.1 931,412 - +0.2 931,434 + -0.8 931,481 + +0.1 931,482 - -1.5 931,523 + -0.4 931,523 + +1.3 931,538 + DZA65_RS04465 0.11 -1.1 931,539 - DZA65_RS04465 0.11 +0.0 931,539 - DZA65_RS04465 0.11 +0.3 931,539 - DZA65_RS04465 0.11 +0.7 931,539 - DZA65_RS04465 0.11 -1.5 931,542 + DZA65_RS04465 0.12 +0.5 931,542 + DZA65_RS04465 0.12 -0.8 931,542 + DZA65_RS04465 0.12 -1.9 931,543 - DZA65_RS04465 0.12 +1.5 931,543 - DZA65_RS04465 0.12 -1.1 931,543 - DZA65_RS04465 0.12 -0.1 931,543 - DZA65_RS04465 0.12 -0.8 931,543 - DZA65_RS04465 0.12 -0.5 931,543 - DZA65_RS04465 0.12 -1.1 931,588 - DZA65_RS04465 0.18 -1.1 931,677 + DZA65_RS04465 0.31 +0.2 931,677 + DZA65_RS04465 0.31 +2.8 931,678 - DZA65_RS04465 0.31 +0.7 931,678 - DZA65_RS04465 0.31 +0.5 931,678 - DZA65_RS04465 0.31 -0.1 931,683 + DZA65_RS04465 0.32 -0.8 931,683 + DZA65_RS04465 0.32 +0.2 931,684 - DZA65_RS04465 0.32 -1.7 931,684 - DZA65_RS04465 0.32 +0.8 931,684 - DZA65_RS04465 0.32 +0.9 931,710 + DZA65_RS04465 0.36 -1.8 931,710 + DZA65_RS04465 0.36 -0.1 931,724 + DZA65_RS04465 0.38 -1.3 931,745 + DZA65_RS04465 0.41 -1.1 931,890 + DZA65_RS04465 0.62 -1.3 931,890 + DZA65_RS04465 0.62 +2.5 931,891 - DZA65_RS04465 0.62 -0.5 931,924 + DZA65_RS04465 0.67 -0.8 931,924 + DZA65_RS04465 0.67 +0.3 931,924 + DZA65_RS04465 0.67 -0.5 931,924 + DZA65_RS04465 0.67 +1.5 931,924 + DZA65_RS04465 0.67 +2.1 931,924 + DZA65_RS04465 0.67 -1.0 931,924 + DZA65_RS04465 0.67 +0.3 931,925 - DZA65_RS04465 0.67 -0.1 931,925 - DZA65_RS04465 0.67 -0.1 931,925 - DZA65_RS04465 0.67 -1.3 931,925 - DZA65_RS04465 0.67 +1.2 931,925 - DZA65_RS04465 0.67 -0.1 931,925 - DZA65_RS04465 0.67 -2.6 931,925 - DZA65_RS04465 0.67 +3.1 931,925 - DZA65_RS04465 0.67 -1.3 931,925 - DZA65_RS04465 0.67 +0.4 931,929 + DZA65_RS04465 0.67 -1.3 931,929 + DZA65_RS04465 0.67 -0.5 931,929 + DZA65_RS04465 0.67 -1.3 932,008 + DZA65_RS04465 0.79 +0.8 932,008 + DZA65_RS04465 0.79 -0.8 932,009 - DZA65_RS04465 0.79 +1.1 932,009 - DZA65_RS04465 0.79 +0.2 932,009 - DZA65_RS04465 0.79 -0.5 932,009 - DZA65_RS04465 0.79 -0.8 932,016 + DZA65_RS04465 0.80 +0.2 932,023 + DZA65_RS04465 0.81 -2.1 932,024 - DZA65_RS04465 0.81 +0.4 932,024 - DZA65_RS04465 0.81 -1.5 932,024 - DZA65_RS04465 0.81 -2.4 932,030 + DZA65_RS04465 0.82 +1.5 932,031 - DZA65_RS04465 0.82 -2.2 932,031 - DZA65_RS04465 0.82 -0.1 932,131 - -0.8 932,162 + +1.7 932,163 - -1.4 932,215 + -0.3 932,346 - -1.8 932,373 - +0.3 932,429 + -1.4 932,434 + -1.5 932,677 + -0.3 932,677 + -0.3 932,677 + -1.5 932,677 + +0.8 932,677 + -2.3 932,677 + -1.5 932,678 - -1.9 932,678 - -0.9 932,678 - +1.3 932,846 + -0.1 932,846 + +0.4 932,847 - +0.5 932,882 - +0.5 932,934 - +2.1 932,961 + -1.3 932,962 - -1.3 932,962 - +0.9 932,962 - -0.8 932,965 + -1.1 932,965 + -0.4 932,965 + -1.2 932,965 + -2.7 932,966 - +0.5 932,966 - -2.8 932,966 - +0.1 932,966 - -0.7 932,966 - +1.3 932,966 - -0.8 932,966 - -0.5 932,987 + +0.4 933,024 + +0.6 933,025 - +0.2 933,081 - +0.4 933,120 + -1.5 933,120 + -0.3 933,120 + -0.5 933,120 + +2.5 933,120 + -1.1 933,120 + -0.3 933,120 + +1.5 933,120 + -0.8 933,120 + -0.3 933,121 - -1.3 933,121 - DZA65_RS04475 0.10 -0.8 933,121 - DZA65_RS04475 0.10 +1.3 933,121 - DZA65_RS04475 0.10 +0.1 933,121 - DZA65_RS04475 0.10 -0.7 933,123 + DZA65_RS04475 0.10 +0.3 933,123 + DZA65_RS04475 0.10 -2.3 933,123 + DZA65_RS04475 0.10 -2.0 933,123 + DZA65_RS04475 0.10 +0.8 933,123 + DZA65_RS04475 0.10 -0.5 933,124 - DZA65_RS04475 0.10 -0.8 933,124 - DZA65_RS04475 0.10 -0.5 933,124 - -1.5 933,124 - DZA65_RS04475 0.10 -1.5 933,124 - DZA65_RS04475 0.10 +0.9 933,124 - DZA65_RS04475 0.10 -0.3 933,124 - DZA65_RS04475 0.10 -0.6 933,124 - DZA65_RS04475 0.10 -0.8 933,124 - DZA65_RS04475 0.10 +0.1 933,124 - DZA65_RS04475 0.10 +1.1
Or see this region's nucleotide sequence