Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02670 and DZA65_RS02675 are separated by 302 nucleotides DZA65_RS02675 and DZA65_RS02680 are separated by 140 nucleotides
DZA65_RS02670: DZA65_RS02670 - hypothetical protein, at 572,633 to 573,520
_RS02670
DZA65_RS02675: DZA65_RS02675 - Gfo/Idh/MocA family oxidoreductase, at 573,823 to 574,974
_RS02675
DZA65_RS02680: DZA65_RS02680 - heavy metal translocating P-type ATPase, at 575,115 to 577,451
_RS02680
Position (kb) 573
574
575 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 572.852 kb on + strand, within DZA65_RS02670 at 572.852 kb on + strand, within DZA65_RS02670 at 572.852 kb on + strand, within DZA65_RS02670 at 572.852 kb on + strand, within DZA65_RS02670 at 572.852 kb on + strand, within DZA65_RS02670 at 572.852 kb on + strand, within DZA65_RS02670 at 572.852 kb on + strand, within DZA65_RS02670 at 572.852 kb on + strand, within DZA65_RS02670 at 572.852 kb on + strand, within DZA65_RS02670 at 572.853 kb on - strand, within DZA65_RS02670 at 572.853 kb on - strand, within DZA65_RS02670 at 572.853 kb on - strand, within DZA65_RS02670 at 572.853 kb on - strand, within DZA65_RS02670 at 572.853 kb on - strand, within DZA65_RS02670 at 572.853 kb on - strand, within DZA65_RS02670 at 572.853 kb on - strand, within DZA65_RS02670 at 572.853 kb on - strand, within DZA65_RS02670 at 572.962 kb on + strand, within DZA65_RS02670 at 572.962 kb on + strand, within DZA65_RS02670 at 572.962 kb on + strand, within DZA65_RS02670 at 572.962 kb on + strand, within DZA65_RS02670 at 572.963 kb on - strand, within DZA65_RS02670 at 572.963 kb on - strand, within DZA65_RS02670 at 573.008 kb on + strand, within DZA65_RS02670 at 573.041 kb on + strand, within DZA65_RS02670 at 573.041 kb on + strand, within DZA65_RS02670 at 573.042 kb on - strand, within DZA65_RS02670 at 573.196 kb on + strand, within DZA65_RS02670 at 573.197 kb on - strand, within DZA65_RS02670 at 573.234 kb on + strand, within DZA65_RS02670 at 573.257 kb on + strand, within DZA65_RS02670 at 573.258 kb on - strand at 573.269 kb on + strand, within DZA65_RS02670 at 573.269 kb on + strand, within DZA65_RS02670 at 573.269 kb on + strand, within DZA65_RS02670 at 573.313 kb on + strand, within DZA65_RS02670 at 573.313 kb on + strand, within DZA65_RS02670 at 573.313 kb on + strand, within DZA65_RS02670 at 573.313 kb on + strand, within DZA65_RS02670 at 573.314 kb on - strand, within DZA65_RS02670 at 573.351 kb on - strand, within DZA65_RS02670 at 573.351 kb on - strand, within DZA65_RS02670 at 573.369 kb on - strand, within DZA65_RS02670 at 573.406 kb on - strand, within DZA65_RS02670 at 573.406 kb on - strand, within DZA65_RS02670 at 573.406 kb on - strand, within DZA65_RS02670 at 573.406 kb on - strand, within DZA65_RS02670 at 573.496 kb on + strand at 573.497 kb on - strand at 573.507 kb on + strand at 573.507 kb on + strand at 573.507 kb on + strand at 573.507 kb on + strand at 573.507 kb on + strand at 573.508 kb on - strand at 573.508 kb on - strand at 573.508 kb on - strand at 573.512 kb on + strand at 573.512 kb on + strand at 573.512 kb on + strand at 573.512 kb on + strand at 573.513 kb on - strand at 573.513 kb on - strand at 573.513 kb on - strand at 573.513 kb on - strand at 573.513 kb on - strand at 573.513 kb on - strand at 573.513 kb on - strand at 573.556 kb on - strand at 573.556 kb on - strand at 573.568 kb on + strand at 573.569 kb on - strand at 573.618 kb on + strand at 573.620 kb on + strand at 573.738 kb on + strand at 573.739 kb on - strand at 573.776 kb on - strand at 573.820 kb on + strand at 573.820 kb on + strand at 573.820 kb on + strand at 573.820 kb on + strand at 573.820 kb on + strand at 573.820 kb on + strand at 573.820 kb on + strand at 573.821 kb on - strand at 573.821 kb on - strand at 573.821 kb on - strand at 573.821 kb on - strand at 573.821 kb on - strand at 574.047 kb on + strand, within DZA65_RS02675 at 574.047 kb on + strand, within DZA65_RS02675 at 574.048 kb on - strand, within DZA65_RS02675 at 574.048 kb on - strand, within DZA65_RS02675 at 574.048 kb on - strand at 574.048 kb on - strand, within DZA65_RS02675 at 574.076 kb on + strand, within DZA65_RS02675 at 574.077 kb on - strand, within DZA65_RS02675 at 574.088 kb on - strand, within DZA65_RS02675 at 574.088 kb on - strand, within DZA65_RS02675 at 574.088 kb on - strand at 574.089 kb on + strand, within DZA65_RS02675 at 574.090 kb on - strand, within DZA65_RS02675 at 574.090 kb on - strand, within DZA65_RS02675 at 574.090 kb on - strand, within DZA65_RS02675 at 574.098 kb on + strand, within DZA65_RS02675 at 574.194 kb on - strand, within DZA65_RS02675 at 574.202 kb on - strand, within DZA65_RS02675 at 574.214 kb on - strand, within DZA65_RS02675 at 574.214 kb on - strand, within DZA65_RS02675 at 574.260 kb on + strand, within DZA65_RS02675 at 574.260 kb on + strand, within DZA65_RS02675 at 574.260 kb on + strand, within DZA65_RS02675 at 574.261 kb on - strand, within DZA65_RS02675 at 574.261 kb on - strand, within DZA65_RS02675 at 574.284 kb on + strand, within DZA65_RS02675 at 574.285 kb on - strand, within DZA65_RS02675 at 574.295 kb on - strand, within DZA65_RS02675 at 574.295 kb on - strand, within DZA65_RS02675 at 574.311 kb on + strand, within DZA65_RS02675 at 574.312 kb on - strand, within DZA65_RS02675 at 574.331 kb on - strand, within DZA65_RS02675 at 574.339 kb on + strand, within DZA65_RS02675 at 574.339 kb on + strand, within DZA65_RS02675 at 574.340 kb on - strand, within DZA65_RS02675 at 574.340 kb on - strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.352 kb on - strand, within DZA65_RS02675 at 574.352 kb on - strand, within DZA65_RS02675 at 574.352 kb on - strand, within DZA65_RS02675 at 574.352 kb on - strand, within DZA65_RS02675 at 574.352 kb on - strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.388 kb on - strand, within DZA65_RS02675 at 574.388 kb on - strand, within DZA65_RS02675 at 574.498 kb on + strand, within DZA65_RS02675 at 574.498 kb on + strand, within DZA65_RS02675 at 574.506 kb on + strand, within DZA65_RS02675 at 574.506 kb on + strand, within DZA65_RS02675 at 574.507 kb on - strand, within DZA65_RS02675 at 574.507 kb on - strand, within DZA65_RS02675 at 574.588 kb on + strand at 574.588 kb on + strand, within DZA65_RS02675 at 574.588 kb on + strand, within DZA65_RS02675 at 574.588 kb on + strand, within DZA65_RS02675 at 574.589 kb on - strand, within DZA65_RS02675 at 574.589 kb on - strand, within DZA65_RS02675 at 574.753 kb on + strand, within DZA65_RS02675 at 574.753 kb on + strand, within DZA65_RS02675 at 574.754 kb on - strand, within DZA65_RS02675 at 574.761 kb on + strand, within DZA65_RS02675 at 574.768 kb on + strand, within DZA65_RS02675 at 574.768 kb on + strand, within DZA65_RS02675 at 574.768 kb on + strand, within DZA65_RS02675 at 574.768 kb on + strand, within DZA65_RS02675 at 574.768 kb on + strand, within DZA65_RS02675 at 574.768 kb on + strand, within DZA65_RS02675 at 574.791 kb on + strand, within DZA65_RS02675 at 574.791 kb on + strand, within DZA65_RS02675 at 574.994 kb on + strand at 574.995 kb on - strand at 574.995 kb on - strand at 574.995 kb on - strand at 574.995 kb on - strand at 574.995 kb on - strand at 575.001 kb on + strand at 575.001 kb on + strand at 575.001 kb on + strand at 575.001 kb on + strand at 575.001 kb on + strand at 575.116 kb on + strand at 575.116 kb on + strand at 575.116 kb on + strand at 575.116 kb on + strand at 575.116 kb on + strand at 575.116 kb on + strand at 575.117 kb on - strand at 575.117 kb on - strand at 575.148 kb on + strand at 575.149 kb on - strand at 575.200 kb on - strand at 575.200 kb on - strand at 575.312 kb on + strand at 575.313 kb on - strand at 575.313 kb on - strand at 575.502 kb on + strand, within DZA65_RS02680 at 575.502 kb on + strand, within DZA65_RS02680 at 575.502 kb on + strand, within DZA65_RS02680 at 575.502 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.562 kb on - strand, within DZA65_RS02680 at 575.575 kb on + strand, within DZA65_RS02680 at 575.576 kb on - strand, within DZA65_RS02680 at 575.576 kb on - strand, within DZA65_RS02680 at 575.607 kb on + strand, within DZA65_RS02680 at 575.633 kb on + strand, within DZA65_RS02680 at 575.812 kb on + strand at 575.813 kb on - strand, within DZA65_RS02680 at 575.813 kb on - strand, within DZA65_RS02680
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 572,852 + DZA65_RS02670 0.25 -2.1 572,852 + DZA65_RS02670 0.25 -1.0 572,852 + DZA65_RS02670 0.25 -0.7 572,852 + DZA65_RS02670 0.25 +0.4 572,852 + DZA65_RS02670 0.25 -1.6 572,852 + DZA65_RS02670 0.25 -2.6 572,852 + DZA65_RS02670 0.25 -1.9 572,852 + DZA65_RS02670 0.25 +0.3 572,852 + DZA65_RS02670 0.25 -0.7 572,853 - DZA65_RS02670 0.25 -1.1 572,853 - DZA65_RS02670 0.25 +0.6 572,853 - DZA65_RS02670 0.25 -1.4 572,853 - DZA65_RS02670 0.25 -2.0 572,853 - DZA65_RS02670 0.25 -0.4 572,853 - DZA65_RS02670 0.25 +1.9 572,853 - DZA65_RS02670 0.25 -1.4 572,853 - DZA65_RS02670 0.25 +0.3 572,962 + DZA65_RS02670 0.37 +0.8 572,962 + DZA65_RS02670 0.37 +0.6 572,962 + DZA65_RS02670 0.37 +0.6 572,962 + DZA65_RS02670 0.37 -1.0 572,963 - DZA65_RS02670 0.37 +0.0 572,963 - DZA65_RS02670 0.37 +1.6 573,008 + DZA65_RS02670 0.42 -0.4 573,041 + DZA65_RS02670 0.46 +0.6 573,041 + DZA65_RS02670 0.46 +1.2 573,042 - DZA65_RS02670 0.46 +0.9 573,196 + DZA65_RS02670 0.63 +1.6 573,197 - DZA65_RS02670 0.64 -0.3 573,234 + DZA65_RS02670 0.68 -0.5 573,257 + DZA65_RS02670 0.70 -1.2 573,258 - +0.0 573,269 + DZA65_RS02670 0.72 +0.5 573,269 + DZA65_RS02670 0.72 +0.0 573,269 + DZA65_RS02670 0.72 -0.5 573,313 + DZA65_RS02670 0.77 +2.1 573,313 + DZA65_RS02670 0.77 +1.5 573,313 + DZA65_RS02670 0.77 +0.7 573,313 + DZA65_RS02670 0.77 +0.3 573,314 - DZA65_RS02670 0.77 +0.1 573,351 - DZA65_RS02670 0.81 -0.4 573,351 - DZA65_RS02670 0.81 -1.2 573,369 - DZA65_RS02670 0.83 -1.4 573,406 - DZA65_RS02670 0.87 +0.0 573,406 - DZA65_RS02670 0.87 -0.6 573,406 - DZA65_RS02670 0.87 -2.1 573,406 - DZA65_RS02670 0.87 -0.2 573,496 + -0.7 573,497 - -1.9 573,507 + -0.7 573,507 + +0.3 573,507 + -1.0 573,507 + -1.1 573,507 + -1.0 573,508 - +0.7 573,508 - +0.0 573,508 - -0.7 573,512 + -0.4 573,512 + +0.9 573,512 + -0.8 573,512 + -2.2 573,513 - +0.0 573,513 - -1.3 573,513 - +0.0 573,513 - -1.6 573,513 - -0.2 573,513 - -1.2 573,513 - -0.4 573,556 - -0.6 573,556 - +0.5 573,568 + -1.2 573,569 - +0.5 573,618 + -2.8 573,620 + -0.5 573,738 + +0.3 573,739 - -1.4 573,776 - +1.3 573,820 + +0.6 573,820 + -1.6 573,820 + +1.0 573,820 + +0.7 573,820 + -1.3 573,820 + -2.9 573,820 + -0.7 573,821 - -0.7 573,821 - -0.1 573,821 - -0.6 573,821 - -2.6 573,821 - +0.6 574,047 + DZA65_RS02675 0.19 +1.1 574,047 + DZA65_RS02675 0.19 -0.3 574,048 - DZA65_RS02675 0.20 +0.6 574,048 - DZA65_RS02675 0.20 +0.0 574,048 - -1.7 574,048 - DZA65_RS02675 0.20 +0.6 574,076 + DZA65_RS02675 0.22 -0.7 574,077 - DZA65_RS02675 0.22 -2.0 574,088 - DZA65_RS02675 0.23 +0.2 574,088 - DZA65_RS02675 0.23 +0.2 574,088 - +0.6 574,089 + DZA65_RS02675 0.23 -0.1 574,090 - DZA65_RS02675 0.23 -1.0 574,090 - DZA65_RS02675 0.23 -1.0 574,090 - DZA65_RS02675 0.23 -0.8 574,098 + DZA65_RS02675 0.24 +0.6 574,194 - DZA65_RS02675 0.32 -0.7 574,202 - DZA65_RS02675 0.33 -0.8 574,214 - DZA65_RS02675 0.34 -0.7 574,214 - DZA65_RS02675 0.34 -2.0 574,260 + DZA65_RS02675 0.38 +0.0 574,260 + DZA65_RS02675 0.38 -0.4 574,260 + DZA65_RS02675 0.38 +1.1 574,261 - DZA65_RS02675 0.38 -0.9 574,261 - DZA65_RS02675 0.38 -0.9 574,284 + DZA65_RS02675 0.40 -0.5 574,285 - DZA65_RS02675 0.40 +0.0 574,295 - DZA65_RS02675 0.41 -0.7 574,295 - DZA65_RS02675 0.41 +0.0 574,311 + DZA65_RS02675 0.42 +0.7 574,312 - DZA65_RS02675 0.42 -0.6 574,331 - DZA65_RS02675 0.44 +0.0 574,339 + DZA65_RS02675 0.45 +1.3 574,339 + DZA65_RS02675 0.45 +0.8 574,340 - DZA65_RS02675 0.45 -1.7 574,340 - DZA65_RS02675 0.45 +1.8 574,351 + DZA65_RS02675 0.46 -1.0 574,351 + DZA65_RS02675 0.46 +1.2 574,351 + DZA65_RS02675 0.46 +3.2 574,351 + DZA65_RS02675 0.46 +0.8 574,351 + DZA65_RS02675 0.46 -0.2 574,351 + DZA65_RS02675 0.46 +0.3 574,351 + DZA65_RS02675 0.46 -0.4 574,351 + DZA65_RS02675 0.46 -1.6 574,351 + DZA65_RS02675 0.46 +0.0 574,351 + DZA65_RS02675 0.46 +0.9 574,352 - DZA65_RS02675 0.46 +1.0 574,352 - DZA65_RS02675 0.46 -1.0 574,352 - DZA65_RS02675 0.46 +1.6 574,352 - DZA65_RS02675 0.46 +0.4 574,352 - DZA65_RS02675 0.46 +0.6 574,353 + DZA65_RS02675 0.46 +0.6 574,353 + DZA65_RS02675 0.46 -1.6 574,353 + DZA65_RS02675 0.46 -0.6 574,353 + DZA65_RS02675 0.46 -1.0 574,353 + DZA65_RS02675 0.46 -0.4 574,353 + DZA65_RS02675 0.46 +1.8 574,353 + DZA65_RS02675 0.46 -1.1 574,353 + DZA65_RS02675 0.46 -1.2 574,354 - DZA65_RS02675 0.46 +0.5 574,354 - DZA65_RS02675 0.46 +0.6 574,354 - DZA65_RS02675 0.46 +1.2 574,354 - DZA65_RS02675 0.46 -0.6 574,354 - DZA65_RS02675 0.46 +1.4 574,354 - DZA65_RS02675 0.46 -1.2 574,354 - -1.6 574,354 - DZA65_RS02675 0.46 -0.7 574,354 - DZA65_RS02675 0.46 -1.0 574,354 - DZA65_RS02675 0.46 +3.9 574,354 - DZA65_RS02675 0.46 -0.4 574,388 - DZA65_RS02675 0.49 -0.9 574,388 - DZA65_RS02675 0.49 +0.2 574,498 + DZA65_RS02675 0.59 +1.2 574,498 + DZA65_RS02675 0.59 -0.7 574,506 + DZA65_RS02675 0.59 +1.1 574,506 + DZA65_RS02675 0.59 -0.1 574,507 - DZA65_RS02675 0.59 -2.0 574,507 - DZA65_RS02675 0.59 -0.6 574,588 + -0.9 574,588 + DZA65_RS02675 0.66 +1.2 574,588 + DZA65_RS02675 0.66 +0.3 574,588 + DZA65_RS02675 0.66 -1.0 574,589 - DZA65_RS02675 0.66 -0.4 574,589 - DZA65_RS02675 0.66 -1.4 574,753 + DZA65_RS02675 0.81 +0.9 574,753 + DZA65_RS02675 0.81 -1.0 574,754 - DZA65_RS02675 0.81 -0.7 574,761 + DZA65_RS02675 0.81 -0.4 574,768 + DZA65_RS02675 0.82 -0.7 574,768 + DZA65_RS02675 0.82 -1.3 574,768 + DZA65_RS02675 0.82 -1.2 574,768 + DZA65_RS02675 0.82 +1.8 574,768 + DZA65_RS02675 0.82 -1.7 574,768 + DZA65_RS02675 0.82 +0.3 574,791 + DZA65_RS02675 0.84 +0.6 574,791 + DZA65_RS02675 0.84 -0.7 574,994 + -2.4 574,995 - -0.7 574,995 - -1.4 574,995 - -2.2 574,995 - -0.1 574,995 - -2.0 575,001 + -0.5 575,001 + -0.9 575,001 + -0.2 575,001 + -2.7 575,001 + -1.3 575,116 + -1.9 575,116 + +0.0 575,116 + -1.6 575,116 + -1.0 575,116 + -0.4 575,116 + -1.0 575,117 - -1.6 575,117 - +0.3 575,148 + -0.9 575,149 - +1.6 575,200 - -1.4 575,200 - +1.3 575,312 + -0.4 575,313 - +1.2 575,313 - -0.7 575,502 + DZA65_RS02680 0.17 +0.6 575,502 + DZA65_RS02680 0.17 -2.0 575,502 + DZA65_RS02680 0.17 -0.4 575,502 + DZA65_RS02680 0.17 +1.4 575,547 + DZA65_RS02680 0.18 -1.0 575,547 + DZA65_RS02680 0.18 -1.4 575,547 + DZA65_RS02680 0.18 -0.4 575,547 + DZA65_RS02680 0.18 -0.1 575,547 + DZA65_RS02680 0.18 -1.6 575,547 + DZA65_RS02680 0.18 -0.7 575,547 + DZA65_RS02680 0.18 +0.2 575,548 - DZA65_RS02680 0.19 -3.3 575,548 - DZA65_RS02680 0.19 -0.4 575,548 - DZA65_RS02680 0.19 +1.1 575,548 - DZA65_RS02680 0.19 +1.0 575,548 - DZA65_RS02680 0.19 -0.2 575,548 - DZA65_RS02680 0.19 -0.7 575,548 - DZA65_RS02680 0.19 +1.8 575,562 - DZA65_RS02680 0.19 -0.6 575,575 + DZA65_RS02680 0.20 +0.0 575,576 - DZA65_RS02680 0.20 -1.4 575,576 - DZA65_RS02680 0.20 -0.7 575,607 + DZA65_RS02680 0.21 -0.4 575,633 + DZA65_RS02680 0.22 +3.2 575,812 + -0.7 575,813 - DZA65_RS02680 0.30 -0.7 575,813 - DZA65_RS02680 0.30 +1.6
Or see this region's nucleotide sequence