Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01830

Experiment: Stem-Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01825 and DZA65_RS01830 are separated by 233 nucleotidesDZA65_RS01830 and DZA65_RS01835 are separated by 154 nucleotides DZA65_RS01825: DZA65_RS01825 - iron-containing alcohol dehydrogenase, at 397,711 to 398,862 _RS01825 DZA65_RS01830: DZA65_RS01830 - rhamnulose-1-phosphate aldolase, at 399,096 to 399,923 _RS01830 DZA65_RS01835: DZA65_RS01835 - LacI family DNA-binding transcriptional regulator, at 400,078 to 401,109 _RS01835 Position (kb) 399 400Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 398.317 kb on + strand, within DZA65_RS01825at 398.317 kb on + strand, within DZA65_RS01825at 398.317 kb on + strand, within DZA65_RS01825at 398.317 kb on + strand, within DZA65_RS01825at 398.317 kb on + strand, within DZA65_RS01825at 398.317 kb on + strand, within DZA65_RS01825at 398.317 kb on + strand, within DZA65_RS01825at 398.317 kb on + strand, within DZA65_RS01825at 398.317 kb on + strand, within DZA65_RS01825at 398.317 kb on + strand, within DZA65_RS01825at 398.317 kb on + strand, within DZA65_RS01825at 398.318 kb on - strand, within DZA65_RS01825at 398.318 kb on - strand, within DZA65_RS01825at 398.318 kb on - strand, within DZA65_RS01825at 398.318 kb on - strand, within DZA65_RS01825at 398.318 kb on - strand, within DZA65_RS01825at 398.318 kb on - strand, within DZA65_RS01825at 398.318 kb on - strand, within DZA65_RS01825at 398.318 kb on - strand, within DZA65_RS01825at 398.318 kb on - strand, within DZA65_RS01825at 398.367 kb on + strand, within DZA65_RS01825at 398.491 kb on + strand, within DZA65_RS01825at 398.491 kb on + strand, within DZA65_RS01825at 398.492 kb on - strand, within DZA65_RS01825at 398.492 kb on - strand, within DZA65_RS01825at 398.492 kb on - strand, within DZA65_RS01825at 398.492 kb on - strand, within DZA65_RS01825at 398.529 kb on + strand, within DZA65_RS01825at 398.530 kb on - strand, within DZA65_RS01825at 398.557 kb on - strand, within DZA65_RS01825at 398.628 kb on + strand, within DZA65_RS01825at 398.845 kb on + strandat 398.845 kb on + strandat 398.845 kb on + strandat 398.845 kb on + strandat 398.845 kb on + strandat 398.845 kb on + strandat 398.845 kb on + strandat 398.845 kb on + strandat 398.845 kb on + strandat 398.845 kb on + strandat 398.846 kb on - strandat 398.846 kb on - strandat 398.846 kb on - strandat 398.846 kb on - strandat 398.846 kb on - strandat 398.846 kb on - strandat 398.846 kb on - strandat 398.861 kb on - strandat 398.909 kb on + strandat 398.910 kb on - strandat 398.957 kb on + strandat 398.957 kb on + strandat 398.957 kb on + strandat 398.958 kb on - strandat 398.958 kb on - strandat 398.958 kb on - strandat 399.041 kb on + strandat 399.041 kb on + strandat 399.041 kb on + strandat 399.041 kb on + strandat 399.041 kb on + strandat 399.042 kb on - strandat 399.042 kb on - strandat 399.042 kb on - strandat 399.042 kb on - strandat 399.042 kb on - strandat 399.042 kb on - strandat 399.042 kb on - strandat 399.066 kb on - strandat 399.091 kb on + strandat 399.091 kb on + strandat 399.091 kb on + strandat 399.092 kb on - strandat 399.092 kb on - strandat 399.092 kb on - strandat 399.092 kb on - strandat 399.092 kb on - strandat 399.092 kb on - strandat 399.092 kb on - strandat 399.092 kb on - strandat 399.094 kb on + strandat 399.094 kb on + strandat 399.094 kb on + strandat 399.094 kb on + strandat 399.094 kb on + strandat 399.095 kb on - strandat 399.095 kb on - strandat 399.095 kb on - strandat 399.095 kb on - strandat 399.095 kb on - strandat 399.095 kb on - strandat 399.106 kb on + strandat 399.106 kb on + strandat 399.106 kb on + strandat 399.106 kb on + strandat 399.106 kb on + strandat 399.106 kb on + strandat 399.106 kb on + strandat 399.106 kb on + strandat 399.106 kb on + strandat 399.106 kb on + strandat 399.106 kb on + strandat 399.106 kb on + strandat 399.107 kb on - strandat 399.107 kb on - strandat 399.107 kb on - strandat 399.107 kb on - strandat 399.107 kb on - strandat 399.107 kb on - strandat 399.107 kb on - strandat 399.107 kb on - strandat 399.162 kb on + strandat 399.162 kb on + strandat 399.162 kb on + strandat 399.163 kb on - strandat 399.163 kb on - strandat 399.163 kb on - strandat 399.163 kb on - strandat 399.163 kb on - strandat 399.163 kb on - strandat 399.163 kb on - strandat 399.163 kb on - strandat 399.203 kb on + strand, within DZA65_RS01830at 399.203 kb on + strand, within DZA65_RS01830at 399.203 kb on + strand, within DZA65_RS01830at 399.203 kb on + strand, within DZA65_RS01830at 399.203 kb on + strand, within DZA65_RS01830at 399.203 kb on + strand, within DZA65_RS01830at 399.204 kb on - strand, within DZA65_RS01830at 399.204 kb on - strand, within DZA65_RS01830at 399.204 kb on - strand, within DZA65_RS01830at 399.225 kb on - strand, within DZA65_RS01830at 399.225 kb on - strand, within DZA65_RS01830at 399.456 kb on + strand, within DZA65_RS01830at 399.456 kb on + strand, within DZA65_RS01830at 399.476 kb on + strand, within DZA65_RS01830at 399.476 kb on + strand, within DZA65_RS01830at 399.477 kb on - strand, within DZA65_RS01830at 399.477 kb on - strand, within DZA65_RS01830at 399.477 kb on - strand, within DZA65_RS01830at 399.493 kb on + strand, within DZA65_RS01830at 399.493 kb on + strand, within DZA65_RS01830at 399.493 kb on + strand, within DZA65_RS01830at 399.493 kb on + strand, within DZA65_RS01830at 399.493 kb on + strand, within DZA65_RS01830at 399.493 kb on + strandat 399.493 kb on + strand, within DZA65_RS01830at 399.493 kb on + strand, within DZA65_RS01830at 399.493 kb on + strand, within DZA65_RS01830at 399.494 kb on - strand, within DZA65_RS01830at 399.585 kb on + strand, within DZA65_RS01830at 399.586 kb on - strand, within DZA65_RS01830at 399.586 kb on - strand, within DZA65_RS01830at 399.596 kb on + strand, within DZA65_RS01830at 399.596 kb on + strand, within DZA65_RS01830at 399.596 kb on + strand, within DZA65_RS01830at 399.597 kb on - strand, within DZA65_RS01830at 399.597 kb on - strand, within DZA65_RS01830at 399.597 kb on - strand, within DZA65_RS01830at 399.597 kb on - strand, within DZA65_RS01830at 399.597 kb on - strand, within DZA65_RS01830at 399.606 kb on + strand, within DZA65_RS01830at 399.606 kb on + strand, within DZA65_RS01830at 399.607 kb on - strand, within DZA65_RS01830at 399.607 kb on - strand, within DZA65_RS01830at 399.607 kb on - strand, within DZA65_RS01830at 399.683 kb on + strand, within DZA65_RS01830at 399.683 kb on + strand, within DZA65_RS01830at 399.683 kb on + strand, within DZA65_RS01830at 399.683 kb on + strand, within DZA65_RS01830at 399.683 kb on + strand, within DZA65_RS01830at 399.683 kb on + strand, within DZA65_RS01830at 399.683 kb on + strand, within DZA65_RS01830at 399.683 kb on + strand, within DZA65_RS01830at 399.684 kb on - strand, within DZA65_RS01830at 399.684 kb on - strand, within DZA65_RS01830at 399.684 kb on - strand, within DZA65_RS01830at 399.684 kb on - strand, within DZA65_RS01830at 399.684 kb on - strand, within DZA65_RS01830at 399.684 kb on - strand, within DZA65_RS01830at 399.684 kb on - strand, within DZA65_RS01830at 399.684 kb on - strand, within DZA65_RS01830at 399.716 kb on + strand, within DZA65_RS01830at 399.717 kb on - strand, within DZA65_RS01830at 399.717 kb on - strand, within DZA65_RS01830at 399.717 kb on - strand, within DZA65_RS01830at 399.747 kb on - strand, within DZA65_RS01830at 399.773 kb on + strand, within DZA65_RS01830at 399.773 kb on + strand, within DZA65_RS01830at 399.890 kb on + strandat 399.890 kb on + strandat 399.891 kb on - strandat 399.891 kb on - strandat 399.902 kb on + strandat 399.921 kb on + strandat 399.921 kb on + strandat 399.921 kb on + strandat 399.921 kb on + strandat 399.922 kb on - strandat 399.922 kb on - strandat 399.922 kb on - strandat 399.922 kb on - strandat 399.950 kb on + strandat 399.950 kb on + strandat 399.950 kb on + strandat 399.950 kb on + strandat 399.950 kb on + strandat 399.950 kb on + strandat 399.951 kb on - strandat 399.951 kb on - strandat 399.951 kb on - strandat 400.000 kb on + strandat 400.000 kb on + strandat 400.000 kb on + strandat 400.001 kb on - strandat 400.001 kb on - strandat 400.001 kb on - strandat 400.001 kb on - strandat 400.009 kb on - strandat 400.009 kb on - strandat 400.009 kb on - strandat 400.009 kb on - strandat 400.046 kb on + strandat 400.046 kb on + strandat 400.047 kb on - strandat 400.055 kb on + strandat 400.055 kb on + strandat 400.055 kb on + strandat 400.055 kb on + strandat 400.055 kb on + strandat 400.056 kb on - strandat 400.056 kb on - strandat 400.056 kb on - strandat 400.064 kb on + strandat 400.065 kb on - strandat 400.065 kb on - strandat 400.136 kb on + strandat 400.136 kb on + strandat 400.136 kb on + strandat 400.136 kb on + strandat 400.136 kb on + strandat 400.137 kb on - strandat 400.137 kb on - strandat 400.137 kb on - strandat 400.137 kb on - strandat 400.137 kb on - strandat 400.137 kb on - strandat 400.137 kb on - strandat 400.137 kb on - strandat 400.137 kb on - strandat 400.262 kb on + strand, within DZA65_RS01835at 400.262 kb on + strand, within DZA65_RS01835at 400.263 kb on - strand, within DZA65_RS01835at 400.415 kb on + strand, within DZA65_RS01835at 400.416 kb on - strand, within DZA65_RS01835at 400.433 kb on + strand, within DZA65_RS01835at 400.433 kb on + strand, within DZA65_RS01835at 400.433 kb on + strand, within DZA65_RS01835at 400.433 kb on + strand, within DZA65_RS01835at 400.433 kb on + strand, within DZA65_RS01835at 400.433 kb on + strand, within DZA65_RS01835at 400.434 kb on - strand, within DZA65_RS01835at 400.434 kb on - strand, within DZA65_RS01835at 400.434 kb on - strand, within DZA65_RS01835at 400.446 kb on + strand, within DZA65_RS01835at 400.550 kb on + strand, within DZA65_RS01835at 400.550 kb on + strand, within DZA65_RS01835at 400.550 kb on + strand, within DZA65_RS01835at 400.550 kb on + strand, within DZA65_RS01835at 400.550 kb on + strand, within DZA65_RS01835at 400.551 kb on - strand, within DZA65_RS01835at 400.551 kb on - strand, within DZA65_RS01835at 400.551 kb on - strand, within DZA65_RS01835at 400.551 kb on - strand, within DZA65_RS01835at 400.551 kb on - strand, within DZA65_RS01835at 400.599 kb on + strand, within DZA65_RS01835at 400.683 kb on + strand, within DZA65_RS01835at 400.694 kb on + strand, within DZA65_RS01835at 400.797 kb on + strand, within DZA65_RS01835at 400.871 kb on + strand, within DZA65_RS01835at 400.871 kb on + strand, within DZA65_RS01835at 400.872 kb on - strand, within DZA65_RS01835at 400.872 kb on - strand, within DZA65_RS01835at 400.872 kb on - strand, within DZA65_RS01835at 400.872 kb on - strand, within DZA65_RS01835at 400.872 kb on - strand, within DZA65_RS01835at 400.872 kb on - strand, within DZA65_RS01835

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Upstate
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398,317 + DZA65_RS01825 0.53 -1.8
398,317 + DZA65_RS01825 0.53 -1.1
398,317 + DZA65_RS01825 0.53 +0.1
398,317 + DZA65_RS01825 0.53 +0.1
398,317 + DZA65_RS01825 0.53 -1.8
398,317 + DZA65_RS01825 0.53 +0.1
398,317 + DZA65_RS01825 0.53 -0.9
398,317 + DZA65_RS01825 0.53 -0.3
398,317 + DZA65_RS01825 0.53 +0.1
398,317 + DZA65_RS01825 0.53 -0.0
398,317 + DZA65_RS01825 0.53 -0.3
398,318 - DZA65_RS01825 0.53 +0.1
398,318 - DZA65_RS01825 0.53 +0.4
398,318 - DZA65_RS01825 0.53 +0.1
398,318 - DZA65_RS01825 0.53 -0.9
398,318 - DZA65_RS01825 0.53 -1.1
398,318 - DZA65_RS01825 0.53 +0.1
398,318 - DZA65_RS01825 0.53 -0.1
398,318 - DZA65_RS01825 0.53 +0.5
398,318 - DZA65_RS01825 0.53 +0.0
398,367 + DZA65_RS01825 0.57 -0.8
398,491 + DZA65_RS01825 0.68 +0.7
398,491 + DZA65_RS01825 0.68 -0.6
398,492 - DZA65_RS01825 0.68 +1.3
398,492 - DZA65_RS01825 0.68 +0.1
398,492 - DZA65_RS01825 0.68 +1.7
398,492 - DZA65_RS01825 0.68 +0.4
398,529 + DZA65_RS01825 0.71 +0.4
398,530 - DZA65_RS01825 0.71 +0.3
398,557 - DZA65_RS01825 0.73 -1.9
398,628 + DZA65_RS01825 0.80 -1.2
398,845 + -0.9
398,845 + -0.6
398,845 + +0.3
398,845 + -0.4
398,845 + -1.5
398,845 + -1.5
398,845 + -0.8
398,845 + -0.3
398,845 + -1.1
398,845 + +2.3
398,846 - +0.4
398,846 - -2.3
398,846 - -0.1
398,846 - -0.6
398,846 - +0.7
398,846 - +1.7
398,846 - -1.6
398,861 - -0.2
398,909 + +1.3
398,910 - -0.5
398,957 + -0.2
398,957 + +1.8
398,957 + -0.9
398,958 - -0.8
398,958 - +1.7
398,958 - -1.9
399,041 + -1.4
399,041 + -0.3
399,041 + -1.1
399,041 + +0.3
399,041 + +0.1
399,042 - -0.3
399,042 - -0.6
399,042 - -0.9
399,042 - +1.7
399,042 - -0.1
399,042 - +1.0
399,042 - +0.1
399,066 - +0.1
399,091 + -0.1
399,091 + -0.6
399,091 + -0.3
399,092 - -2.6
399,092 - +0.7
399,092 - -1.2
399,092 - +1.1
399,092 - +0.4
399,092 - +1.0
399,092 - +0.4
399,092 - -0.6
399,094 + +0.1
399,094 + +0.1
399,094 + -0.0
399,094 + -1.1
399,094 + +0.1
399,095 - +0.5
399,095 - -0.3
399,095 - -0.6
399,095 - +0.1
399,095 - -1.3
399,095 - -0.9
399,106 + -0.3
399,106 + -1.3
399,106 + -0.6
399,106 + -2.1
399,106 + +1.0
399,106 + +1.2
399,106 + -0.2
399,106 + -1.1
399,106 + -2.6
399,106 + +0.1
399,106 + +0.3
399,106 + -1.0
399,107 - -1.0
399,107 - -1.1
399,107 - +0.1
399,107 - -1.9
399,107 - +1.7
399,107 - +1.7
399,107 - +0.1
399,107 - +0.1
399,162 + +0.4
399,162 + +0.3
399,162 + +0.1
399,163 - +1.1
399,163 - -1.1
399,163 - +0.1
399,163 - -1.9
399,163 - +0.9
399,163 - +0.1
399,163 - +0.1
399,163 - +1.0
399,203 + DZA65_RS01830 0.13 +1.7
399,203 + DZA65_RS01830 0.13 -0.1
399,203 + DZA65_RS01830 0.13 +2.0
399,203 + DZA65_RS01830 0.13 +0.5
399,203 + DZA65_RS01830 0.13 +0.2
399,203 + DZA65_RS01830 0.13 -1.0
399,204 - DZA65_RS01830 0.13 -0.6
399,204 - DZA65_RS01830 0.13 -1.3
399,204 - DZA65_RS01830 0.13 -0.0
399,225 - DZA65_RS01830 0.16 -0.4
399,225 - DZA65_RS01830 0.16 -0.3
399,456 + DZA65_RS01830 0.43 +1.0
399,456 + DZA65_RS01830 0.43 +0.6
399,476 + DZA65_RS01830 0.46 -0.6
399,476 + DZA65_RS01830 0.46 -0.2
399,477 - DZA65_RS01830 0.46 -0.8
399,477 - DZA65_RS01830 0.46 -0.1
399,477 - DZA65_RS01830 0.46 -0.6
399,493 + DZA65_RS01830 0.48 -0.9
399,493 + DZA65_RS01830 0.48 -1.1
399,493 + DZA65_RS01830 0.48 -2.7
399,493 + DZA65_RS01830 0.48 -0.9
399,493 + DZA65_RS01830 0.48 -1.5
399,493 + -1.3
399,493 + DZA65_RS01830 0.48 +0.4
399,493 + DZA65_RS01830 0.48 +0.2
399,493 + DZA65_RS01830 0.48 -1.2
399,494 - DZA65_RS01830 0.48 -0.0
399,585 + DZA65_RS01830 0.59 -2.5
399,586 - DZA65_RS01830 0.59 -0.9
399,586 - DZA65_RS01830 0.59 +1.5
399,596 + DZA65_RS01830 0.60 -0.5
399,596 + DZA65_RS01830 0.60 -0.6
399,596 + DZA65_RS01830 0.60 -0.6
399,597 - DZA65_RS01830 0.61 -1.3
399,597 - DZA65_RS01830 0.61 -0.2
399,597 - DZA65_RS01830 0.61 -0.1
399,597 - DZA65_RS01830 0.61 +0.5
399,597 - DZA65_RS01830 0.61 -0.1
399,606 + DZA65_RS01830 0.62 -0.5
399,606 + DZA65_RS01830 0.62 +0.1
399,607 - DZA65_RS01830 0.62 -0.8
399,607 - DZA65_RS01830 0.62 +0.9
399,607 - DZA65_RS01830 0.62 -1.3
399,683 + DZA65_RS01830 0.71 +0.4
399,683 + DZA65_RS01830 0.71 -1.1
399,683 + DZA65_RS01830 0.71 +0.2
399,683 + DZA65_RS01830 0.71 -0.6
399,683 + DZA65_RS01830 0.71 -1.5
399,683 + DZA65_RS01830 0.71 -1.5
399,683 + DZA65_RS01830 0.71 +1.2
399,683 + DZA65_RS01830 0.71 +1.5
399,684 - DZA65_RS01830 0.71 +0.7
399,684 - DZA65_RS01830 0.71 +0.3
399,684 - DZA65_RS01830 0.71 -0.8
399,684 - DZA65_RS01830 0.71 -1.2
399,684 - DZA65_RS01830 0.71 -2.5
399,684 - DZA65_RS01830 0.71 -0.3
399,684 - DZA65_RS01830 0.71 -1.6
399,684 - DZA65_RS01830 0.71 +1.0
399,716 + DZA65_RS01830 0.75 -0.3
399,717 - DZA65_RS01830 0.75 -0.0
399,717 - DZA65_RS01830 0.75 -1.3
399,717 - DZA65_RS01830 0.75 -0.5
399,747 - DZA65_RS01830 0.79 -0.3
399,773 + DZA65_RS01830 0.82 +0.7
399,773 + DZA65_RS01830 0.82 -1.1
399,890 + -0.3
399,890 + +0.7
399,891 - -0.6
399,891 - +0.1
399,902 + -0.7
399,921 + +1.0
399,921 + -1.8
399,921 + -1.6
399,921 + -0.2
399,922 - -0.9
399,922 - +0.1
399,922 - +0.1
399,922 - -0.0
399,950 + +1.5
399,950 + -2.7
399,950 + -1.1
399,950 + +1.9
399,950 + -1.4
399,950 + -1.5
399,951 - -1.3
399,951 - +0.7
399,951 - -1.1
400,000 + +0.1
400,000 + -0.9
400,000 + -1.3
400,001 - +0.8
400,001 - +2.1
400,001 - -0.9
400,001 - -1.3
400,009 - +1.0
400,009 - -1.5
400,009 - -1.2
400,009 - +1.4
400,046 + -2.2
400,046 + -1.1
400,047 - -1.1
400,055 + -0.3
400,055 + +1.0
400,055 + +1.3
400,055 + -1.1
400,055 + +1.1
400,056 - -0.3
400,056 - -0.1
400,056 - +1.2
400,064 + -1.8
400,065 - -0.1
400,065 - -1.1
400,136 + -1.1
400,136 + -2.0
400,136 + -1.5
400,136 + -0.7
400,136 + +0.7
400,137 - -0.0
400,137 - -0.6
400,137 - +0.3
400,137 - -3.4
400,137 - -1.1
400,137 - -1.3
400,137 - -1.5
400,137 - -0.6
400,137 - +0.6
400,262 + DZA65_RS01835 0.18 -0.6
400,262 + DZA65_RS01835 0.18 -2.8
400,263 - DZA65_RS01835 0.18 -0.3
400,415 + DZA65_RS01835 0.33 -1.4
400,416 - DZA65_RS01835 0.33 -1.0
400,433 + DZA65_RS01835 0.34 -1.6
400,433 + DZA65_RS01835 0.34 +0.3
400,433 + DZA65_RS01835 0.34 -1.1
400,433 + DZA65_RS01835 0.34 +1.2
400,433 + DZA65_RS01835 0.34 -1.5
400,433 + DZA65_RS01835 0.34 -1.3
400,434 - DZA65_RS01835 0.34 -0.9
400,434 - DZA65_RS01835 0.34 +1.9
400,434 - DZA65_RS01835 0.34 -1.4
400,446 + DZA65_RS01835 0.36 -1.1
400,550 + DZA65_RS01835 0.46 -1.5
400,550 + DZA65_RS01835 0.46 +0.7
400,550 + DZA65_RS01835 0.46 -1.0
400,550 + DZA65_RS01835 0.46 -0.3
400,550 + DZA65_RS01835 0.46 +0.9
400,551 - DZA65_RS01835 0.46 +0.0
400,551 - DZA65_RS01835 0.46 +0.7
400,551 - DZA65_RS01835 0.46 +0.4
400,551 - DZA65_RS01835 0.46 +0.7
400,551 - DZA65_RS01835 0.46 -1.3
400,599 + DZA65_RS01835 0.50 +0.8
400,683 + DZA65_RS01835 0.59 -1.1
400,694 + DZA65_RS01835 0.60 +1.0
400,797 + DZA65_RS01835 0.70 +0.4
400,871 + DZA65_RS01835 0.77 -0.8
400,871 + DZA65_RS01835 0.77 +1.7
400,872 - DZA65_RS01835 0.77 +0.7
400,872 - DZA65_RS01835 0.77 -0.5
400,872 - DZA65_RS01835 0.77 -0.1
400,872 - DZA65_RS01835 0.77 -1.0
400,872 - DZA65_RS01835 0.77 -1.3
400,872 - DZA65_RS01835 0.77 -1.0

Or see this region's nucleotide sequence