Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01320

Experiment: Stem-Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01315 and DZA65_RS01320 are separated by 68 nucleotidesDZA65_RS01320 and DZA65_RS01325 are separated by 233 nucleotides DZA65_RS01315: DZA65_RS01315 - endonuclease, at 293,863 to 295,005 _RS01315 DZA65_RS01320: DZA65_RS01320 - ASCH domain-containing protein, at 295,074 to 295,169 _RS01320 DZA65_RS01325: DZA65_RS01325 - IS256 family transposase, at 295,403 to 296,605 _RS01325 Position (kb) 295 296Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 294.130 kb on - strand, within DZA65_RS01315at 294.130 kb on - strand, within DZA65_RS01315at 294.213 kb on + strand, within DZA65_RS01315at 294.331 kb on + strand, within DZA65_RS01315at 294.331 kb on + strand, within DZA65_RS01315at 294.331 kb on + strand, within DZA65_RS01315at 294.331 kb on + strand, within DZA65_RS01315at 294.331 kb on + strand, within DZA65_RS01315at 294.331 kb on + strand, within DZA65_RS01315at 294.331 kb on + strand, within DZA65_RS01315at 294.331 kb on + strand, within DZA65_RS01315at 294.331 kb on + strand, within DZA65_RS01315at 294.331 kb on + strand, within DZA65_RS01315at 294.331 kb on + strand, within DZA65_RS01315at 294.331 kb on + strand, within DZA65_RS01315at 294.331 kb on + strand, within DZA65_RS01315at 294.331 kb on + strand, within DZA65_RS01315at 294.331 kb on + strand, within DZA65_RS01315at 294.332 kb on - strand, within DZA65_RS01315at 294.332 kb on - strand, within DZA65_RS01315at 294.332 kb on - strand, within DZA65_RS01315at 294.332 kb on - strand, within DZA65_RS01315at 294.332 kb on - strand, within DZA65_RS01315at 294.332 kb on - strand, within DZA65_RS01315at 294.332 kb on - strand, within DZA65_RS01315at 294.332 kb on - strand, within DZA65_RS01315at 294.332 kb on - strand, within DZA65_RS01315at 294.332 kb on - strand, within DZA65_RS01315at 294.396 kb on + strand, within DZA65_RS01315at 294.396 kb on + strand, within DZA65_RS01315at 294.396 kb on + strand, within DZA65_RS01315at 294.396 kb on + strand, within DZA65_RS01315at 294.396 kb on + strand, within DZA65_RS01315at 294.396 kb on + strand, within DZA65_RS01315at 294.396 kb on + strand, within DZA65_RS01315at 294.396 kb on + strand, within DZA65_RS01315at 294.396 kb on + strand, within DZA65_RS01315at 294.396 kb on + strand, within DZA65_RS01315at 294.396 kb on + strand, within DZA65_RS01315at 294.396 kb on + strand, within DZA65_RS01315at 294.397 kb on - strand, within DZA65_RS01315at 294.397 kb on - strand, within DZA65_RS01315at 294.397 kb on - strand, within DZA65_RS01315at 294.397 kb on - strand, within DZA65_RS01315at 294.417 kb on + strand, within DZA65_RS01315at 294.417 kb on + strand, within DZA65_RS01315at 294.418 kb on - strand, within DZA65_RS01315at 294.441 kb on + strand, within DZA65_RS01315at 294.479 kb on + strand, within DZA65_RS01315at 294.479 kb on + strand, within DZA65_RS01315at 294.479 kb on + strand, within DZA65_RS01315at 294.479 kb on + strand, within DZA65_RS01315at 294.479 kb on + strand, within DZA65_RS01315at 294.479 kb on + strand, within DZA65_RS01315at 294.479 kb on + strand, within DZA65_RS01315at 294.479 kb on + strand, within DZA65_RS01315at 294.479 kb on + strand, within DZA65_RS01315at 294.480 kb on - strand, within DZA65_RS01315at 294.480 kb on - strand, within DZA65_RS01315at 294.480 kb on - strand, within DZA65_RS01315at 294.480 kb on - strand, within DZA65_RS01315at 294.480 kb on - strand, within DZA65_RS01315at 294.509 kb on + strand, within DZA65_RS01315at 294.509 kb on + strand, within DZA65_RS01315at 294.509 kb on + strand, within DZA65_RS01315at 294.509 kb on + strand, within DZA65_RS01315at 294.509 kb on + strand, within DZA65_RS01315at 294.509 kb on + strand, within DZA65_RS01315at 294.510 kb on - strand, within DZA65_RS01315at 294.510 kb on - strand, within DZA65_RS01315at 294.510 kb on - strandat 294.510 kb on - strand, within DZA65_RS01315at 294.510 kb on - strand, within DZA65_RS01315at 294.510 kb on - strand, within DZA65_RS01315at 294.510 kb on - strand, within DZA65_RS01315at 294.510 kb on - strand, within DZA65_RS01315at 294.510 kb on - strand, within DZA65_RS01315at 294.619 kb on + strand, within DZA65_RS01315at 294.620 kb on - strand, within DZA65_RS01315at 294.637 kb on + strand, within DZA65_RS01315at 294.637 kb on + strand, within DZA65_RS01315at 294.637 kb on + strand, within DZA65_RS01315at 294.637 kb on + strand, within DZA65_RS01315at 294.637 kb on + strand, within DZA65_RS01315at 294.637 kb on + strand, within DZA65_RS01315at 294.637 kb on + strand, within DZA65_RS01315at 294.637 kb on + strand, within DZA65_RS01315at 294.637 kb on + strand, within DZA65_RS01315at 294.638 kb on - strand, within DZA65_RS01315at 294.638 kb on - strand, within DZA65_RS01315at 294.638 kb on - strand, within DZA65_RS01315at 294.638 kb on - strand, within DZA65_RS01315at 294.638 kb on - strand, within DZA65_RS01315at 294.638 kb on - strand, within DZA65_RS01315at 294.638 kb on - strand, within DZA65_RS01315at 294.638 kb on - strand, within DZA65_RS01315at 294.638 kb on - strand, within DZA65_RS01315at 294.638 kb on - strand, within DZA65_RS01315at 294.638 kb on - strand, within DZA65_RS01315at 294.638 kb on - strand, within DZA65_RS01315at 294.638 kb on - strand, within DZA65_RS01315at 294.638 kb on - strand, within DZA65_RS01315at 294.638 kb on - strand, within DZA65_RS01315at 294.638 kb on - strand, within DZA65_RS01315at 294.638 kb on - strand, within DZA65_RS01315at 294.638 kb on - strand, within DZA65_RS01315at 294.760 kb on + strand, within DZA65_RS01315at 294.760 kb on + strand, within DZA65_RS01315at 294.761 kb on - strand, within DZA65_RS01315at 294.761 kb on - strand, within DZA65_RS01315at 294.761 kb on - strand, within DZA65_RS01315at 294.762 kb on + strand, within DZA65_RS01315at 294.762 kb on + strandat 294.762 kb on + strand, within DZA65_RS01315at 294.762 kb on + strand, within DZA65_RS01315at 294.762 kb on + strand, within DZA65_RS01315at 294.762 kb on + strand, within DZA65_RS01315at 294.762 kb on + strand, within DZA65_RS01315at 294.762 kb on + strand, within DZA65_RS01315at 294.762 kb on + strand, within DZA65_RS01315at 294.762 kb on + strand, within DZA65_RS01315at 294.762 kb on + strand, within DZA65_RS01315at 294.762 kb on + strand, within DZA65_RS01315at 294.762 kb on + strand, within DZA65_RS01315at 294.763 kb on - strand, within DZA65_RS01315at 294.763 kb on - strand, within DZA65_RS01315at 294.763 kb on - strand, within DZA65_RS01315at 294.763 kb on - strand, within DZA65_RS01315at 294.763 kb on - strand, within DZA65_RS01315at 294.766 kb on + strand, within DZA65_RS01315at 294.766 kb on + strand, within DZA65_RS01315at 294.767 kb on - strand, within DZA65_RS01315at 294.767 kb on - strand, within DZA65_RS01315at 294.767 kb on - strand, within DZA65_RS01315at 294.767 kb on - strand, within DZA65_RS01315at 294.769 kb on + strand, within DZA65_RS01315at 294.769 kb on + strand, within DZA65_RS01315at 294.769 kb on + strand, within DZA65_RS01315at 294.769 kb on + strand, within DZA65_RS01315at 294.769 kb on + strand, within DZA65_RS01315at 294.769 kb on + strand, within DZA65_RS01315at 294.769 kb on + strand, within DZA65_RS01315at 294.769 kb on + strand, within DZA65_RS01315at 294.769 kb on + strand, within DZA65_RS01315at 294.770 kb on - strandat 294.770 kb on - strand, within DZA65_RS01315at 294.770 kb on - strand, within DZA65_RS01315at 294.814 kb on + strand, within DZA65_RS01315at 294.814 kb on + strand, within DZA65_RS01315at 294.814 kb on + strand, within DZA65_RS01315at 294.815 kb on - strand, within DZA65_RS01315at 294.815 kb on - strand, within DZA65_RS01315at 294.815 kb on - strand, within DZA65_RS01315at 294.816 kb on + strand, within DZA65_RS01315at 294.816 kb on + strand, within DZA65_RS01315at 294.816 kb on + strand, within DZA65_RS01315at 294.817 kb on - strand, within DZA65_RS01315at 294.817 kb on - strand, within DZA65_RS01315at 294.880 kb on + strand, within DZA65_RS01315at 294.880 kb on + strand, within DZA65_RS01315at 294.880 kb on + strand, within DZA65_RS01315at 294.880 kb on + strand, within DZA65_RS01315at 294.880 kb on + strand, within DZA65_RS01315at 294.881 kb on - strand, within DZA65_RS01315at 294.881 kb on - strand, within DZA65_RS01315at 294.881 kb on - strand, within DZA65_RS01315at 294.881 kb on - strand, within DZA65_RS01315at 294.881 kb on - strand, within DZA65_RS01315at 294.996 kb on + strandat 294.997 kb on - strandat 294.999 kb on + strandat 294.999 kb on + strandat 295.000 kb on - strandat 295.000 kb on - strandat 295.000 kb on - strandat 295.000 kb on - strandat 295.000 kb on - strandat 295.016 kb on - strandat 295.021 kb on + strandat 295.031 kb on + strandat 295.051 kb on - strandat 295.102 kb on - strand, within DZA65_RS01320at 295.212 kb on + strandat 295.233 kb on + strandat 295.236 kb on + strandat 295.237 kb on - strandat 295.237 kb on - strandat 295.237 kb on - strandat 295.264 kb on + strandat 295.265 kb on - strandat 295.267 kb on + strandat 295.315 kb on + strandat 295.315 kb on + strandat 295.315 kb on + strandat 295.315 kb on + strandat 295.315 kb on + strandat 295.315 kb on + strandat 295.315 kb on + strandat 295.315 kb on + strandat 295.316 kb on - strandat 295.316 kb on - strandat 295.316 kb on - strandat 295.316 kb on - strandat 295.316 kb on - strandat 295.316 kb on - strandat 295.316 kb on - strandat 295.316 kb on - strandat 295.316 kb on - strandat 295.316 kb on - strandat 295.316 kb on - strandat 295.330 kb on + strandat 295.331 kb on - strandat 295.331 kb on - strandat 295.331 kb on - strandat 295.334 kb on - strandat 295.334 kb on - strandat 295.405 kb on - strandat 295.405 kb on - strandat 295.441 kb on - strandat 296.017 kb on - strand, within DZA65_RS01325

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Upstate
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294,130 - DZA65_RS01315 0.23 -2.3
294,130 - DZA65_RS01315 0.23 -1.4
294,213 + DZA65_RS01315 0.31 +1.3
294,331 + DZA65_RS01315 0.41 +0.9
294,331 + DZA65_RS01315 0.41 -0.1
294,331 + DZA65_RS01315 0.41 -1.1
294,331 + DZA65_RS01315 0.41 +2.1
294,331 + DZA65_RS01315 0.41 -0.8
294,331 + DZA65_RS01315 0.41 +1.0
294,331 + DZA65_RS01315 0.41 +0.7
294,331 + DZA65_RS01315 0.41 -1.3
294,331 + DZA65_RS01315 0.41 -0.5
294,331 + DZA65_RS01315 0.41 -2.2
294,331 + DZA65_RS01315 0.41 -1.5
294,331 + DZA65_RS01315 0.41 +2.0
294,331 + DZA65_RS01315 0.41 +2.7
294,331 + DZA65_RS01315 0.41 +0.1
294,331 + DZA65_RS01315 0.41 +0.0
294,332 - DZA65_RS01315 0.41 -0.7
294,332 - DZA65_RS01315 0.41 +3.1
294,332 - DZA65_RS01315 0.41 -1.9
294,332 - DZA65_RS01315 0.41 +0.5
294,332 - DZA65_RS01315 0.41 -1.4
294,332 - DZA65_RS01315 0.41 +1.7
294,332 - DZA65_RS01315 0.41 +0.1
294,332 - DZA65_RS01315 0.41 +0.9
294,332 - DZA65_RS01315 0.41 +1.3
294,332 - DZA65_RS01315 0.41 -0.3
294,396 + DZA65_RS01315 0.47 +1.7
294,396 + DZA65_RS01315 0.47 -0.5
294,396 + DZA65_RS01315 0.47 -0.6
294,396 + DZA65_RS01315 0.47 -1.1
294,396 + DZA65_RS01315 0.47 -1.0
294,396 + DZA65_RS01315 0.47 -1.3
294,396 + DZA65_RS01315 0.47 +0.5
294,396 + DZA65_RS01315 0.47 +0.5
294,396 + DZA65_RS01315 0.47 +0.3
294,396 + DZA65_RS01315 0.47 -1.2
294,396 + DZA65_RS01315 0.47 +1.5
294,396 + DZA65_RS01315 0.47 +0.1
294,397 - DZA65_RS01315 0.47 -1.0
294,397 - DZA65_RS01315 0.47 -1.3
294,397 - DZA65_RS01315 0.47 +0.7
294,397 - DZA65_RS01315 0.47 +0.7
294,417 + DZA65_RS01315 0.48 +2.1
294,417 + DZA65_RS01315 0.48 +0.4
294,418 - DZA65_RS01315 0.49 -0.6
294,441 + DZA65_RS01315 0.51 -1.8
294,479 + DZA65_RS01315 0.54 -0.6
294,479 + DZA65_RS01315 0.54 +2.3
294,479 + DZA65_RS01315 0.54 +0.2
294,479 + DZA65_RS01315 0.54 -1.5
294,479 + DZA65_RS01315 0.54 +1.1
294,479 + DZA65_RS01315 0.54 -0.3
294,479 + DZA65_RS01315 0.54 +0.1
294,479 + DZA65_RS01315 0.54 -1.8
294,479 + DZA65_RS01315 0.54 -1.3
294,480 - DZA65_RS01315 0.54 +0.1
294,480 - DZA65_RS01315 0.54 -0.3
294,480 - DZA65_RS01315 0.54 -1.6
294,480 - DZA65_RS01315 0.54 -0.6
294,480 - DZA65_RS01315 0.54 -0.9
294,509 + DZA65_RS01315 0.57 +1.1
294,509 + DZA65_RS01315 0.57 -0.5
294,509 + DZA65_RS01315 0.57 +1.1
294,509 + DZA65_RS01315 0.57 -0.8
294,509 + DZA65_RS01315 0.57 +0.0
294,509 + DZA65_RS01315 0.57 +1.1
294,510 - DZA65_RS01315 0.57 +0.2
294,510 - DZA65_RS01315 0.57 -0.8
294,510 - +0.1
294,510 - DZA65_RS01315 0.57 -2.1
294,510 - DZA65_RS01315 0.57 -0.5
294,510 - DZA65_RS01315 0.57 +0.9
294,510 - DZA65_RS01315 0.57 +1.2
294,510 - DZA65_RS01315 0.57 +0.5
294,510 - DZA65_RS01315 0.57 +0.7
294,619 + DZA65_RS01315 0.66 -1.9
294,620 - DZA65_RS01315 0.66 +0.3
294,637 + DZA65_RS01315 0.68 -0.5
294,637 + DZA65_RS01315 0.68 -0.6
294,637 + DZA65_RS01315 0.68 -0.9
294,637 + DZA65_RS01315 0.68 -1.1
294,637 + DZA65_RS01315 0.68 +0.2
294,637 + DZA65_RS01315 0.68 -2.1
294,637 + DZA65_RS01315 0.68 +2.2
294,637 + DZA65_RS01315 0.68 +1.2
294,637 + DZA65_RS01315 0.68 +1.2
294,638 - DZA65_RS01315 0.68 +0.4
294,638 - DZA65_RS01315 0.68 -0.1
294,638 - DZA65_RS01315 0.68 +1.0
294,638 - DZA65_RS01315 0.68 +1.4
294,638 - DZA65_RS01315 0.68 +2.6
294,638 - DZA65_RS01315 0.68 -0.3
294,638 - DZA65_RS01315 0.68 -0.2
294,638 - DZA65_RS01315 0.68 -1.1
294,638 - DZA65_RS01315 0.68 +0.1
294,638 - DZA65_RS01315 0.68 +0.1
294,638 - DZA65_RS01315 0.68 +0.1
294,638 - DZA65_RS01315 0.68 -0.9
294,638 - DZA65_RS01315 0.68 -0.6
294,638 - DZA65_RS01315 0.68 -0.1
294,638 - DZA65_RS01315 0.68 +1.3
294,638 - DZA65_RS01315 0.68 +2.5
294,638 - DZA65_RS01315 0.68 +0.4
294,638 - DZA65_RS01315 0.68 -1.2
294,760 + DZA65_RS01315 0.78 -0.4
294,760 + DZA65_RS01315 0.78 +0.5
294,761 - DZA65_RS01315 0.79 -1.6
294,761 - DZA65_RS01315 0.79 +0.1
294,761 - DZA65_RS01315 0.79 +1.3
294,762 + DZA65_RS01315 0.79 +2.3
294,762 + -1.1
294,762 + DZA65_RS01315 0.79 -0.5
294,762 + DZA65_RS01315 0.79 +1.0
294,762 + DZA65_RS01315 0.79 -1.8
294,762 + DZA65_RS01315 0.79 -0.5
294,762 + DZA65_RS01315 0.79 -1.1
294,762 + DZA65_RS01315 0.79 -1.1
294,762 + DZA65_RS01315 0.79 -1.1
294,762 + DZA65_RS01315 0.79 +1.2
294,762 + DZA65_RS01315 0.79 -1.3
294,762 + DZA65_RS01315 0.79 +1.0
294,762 + DZA65_RS01315 0.79 -0.1
294,763 - DZA65_RS01315 0.79 -0.0
294,763 - DZA65_RS01315 0.79 -0.3
294,763 - DZA65_RS01315 0.79 -1.6
294,763 - DZA65_RS01315 0.79 -0.3
294,763 - DZA65_RS01315 0.79 +1.1
294,766 + DZA65_RS01315 0.79 +0.3
294,766 + DZA65_RS01315 0.79 +0.4
294,767 - DZA65_RS01315 0.79 -0.3
294,767 - DZA65_RS01315 0.79 -0.9
294,767 - DZA65_RS01315 0.79 -1.5
294,767 - DZA65_RS01315 0.79 +0.7
294,769 + DZA65_RS01315 0.79 -1.9
294,769 + DZA65_RS01315 0.79 -1.7
294,769 + DZA65_RS01315 0.79 -1.8
294,769 + DZA65_RS01315 0.79 -0.1
294,769 + DZA65_RS01315 0.79 -0.2
294,769 + DZA65_RS01315 0.79 -0.5
294,769 + DZA65_RS01315 0.79 +1.3
294,769 + DZA65_RS01315 0.79 -1.1
294,769 + DZA65_RS01315 0.79 -2.8
294,770 - +0.3
294,770 - DZA65_RS01315 0.79 +0.4
294,770 - DZA65_RS01315 0.79 -2.3
294,814 + DZA65_RS01315 0.83 +0.9
294,814 + DZA65_RS01315 0.83 +0.9
294,814 + DZA65_RS01315 0.83 -1.5
294,815 - DZA65_RS01315 0.83 -0.5
294,815 - DZA65_RS01315 0.83 -0.4
294,815 - DZA65_RS01315 0.83 +0.5
294,816 + DZA65_RS01315 0.83 +0.4
294,816 + DZA65_RS01315 0.83 +1.1
294,816 + DZA65_RS01315 0.83 +0.1
294,817 - DZA65_RS01315 0.83 +1.3
294,817 - DZA65_RS01315 0.83 +2.2
294,880 + DZA65_RS01315 0.89 +2.0
294,880 + DZA65_RS01315 0.89 +0.1
294,880 + DZA65_RS01315 0.89 +0.4
294,880 + DZA65_RS01315 0.89 -0.6
294,880 + DZA65_RS01315 0.89 +0.1
294,881 - DZA65_RS01315 0.89 -0.1
294,881 - DZA65_RS01315 0.89 +1.1
294,881 - DZA65_RS01315 0.89 +1.6
294,881 - DZA65_RS01315 0.89 +0.4
294,881 - DZA65_RS01315 0.89 -2.1
294,996 + -0.3
294,997 - -0.6
294,999 + +2.4
294,999 + -0.8
295,000 - +0.7
295,000 - +1.9
295,000 - -0.9
295,000 - +1.3
295,000 - -1.1
295,016 - +0.7
295,021 + -3.0
295,031 + +2.0
295,051 - +1.5
295,102 - DZA65_RS01320 0.29 -1.0
295,212 + -0.2
295,233 + -1.1
295,236 + +1.5
295,237 - -0.9
295,237 - -1.8
295,237 - -0.4
295,264 + -0.2
295,265 - -1.4
295,267 + +1.7
295,315 + -0.2
295,315 + +0.1
295,315 + +1.7
295,315 + +0.7
295,315 + -0.3
295,315 + -1.3
295,315 + -0.3
295,315 + -0.2
295,316 - -1.1
295,316 - +1.1
295,316 - +0.6
295,316 - -1.8
295,316 - +0.1
295,316 - -0.8
295,316 - +0.0
295,316 - +0.5
295,316 - -1.2
295,316 - +1.0
295,316 - -0.6
295,330 + +0.1
295,331 - +1.5
295,331 - +0.4
295,331 - +2.1
295,334 - +0.2
295,334 - -0.3
295,405 - +0.7
295,405 - +1.7
295,441 - -1.6
296,017 - DZA65_RS01325 0.51 -1.1

Or see this region's nucleotide sequence