Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01055

Experiment: Stem-Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01050 and DZA65_RS01055 are separated by 18 nucleotidesDZA65_RS01055 and DZA65_RS01065 are separated by 373 nucleotides DZA65_RS01050: DZA65_RS01050 - Trk system potassium transporter TrkH, at 238,007 to 239,458 _RS01050 DZA65_RS01055: DZA65_RS01055 - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 239,477 to 240,016 _RS01055 DZA65_RS01065: DZA65_RS01065 - 16S ribosomal RNA, at 240,390 to 241,937 _RS01065 Position (kb) 239 240 241Strain fitness (log2 ratio) -3 -2 -1 0 1at 238.487 kb on + strand, within DZA65_RS01050at 238.522 kb on + strand, within DZA65_RS01050at 238.522 kb on + strand, within DZA65_RS01050at 238.523 kb on - strand, within DZA65_RS01050at 238.523 kb on - strand, within DZA65_RS01050at 238.523 kb on - strand, within DZA65_RS01050at 238.523 kb on - strand, within DZA65_RS01050at 238.571 kb on + strand, within DZA65_RS01050at 238.571 kb on + strand, within DZA65_RS01050at 238.571 kb on + strand, within DZA65_RS01050at 238.571 kb on + strand, within DZA65_RS01050at 238.572 kb on - strand, within DZA65_RS01050at 238.572 kb on - strand, within DZA65_RS01050at 238.575 kb on + strand, within DZA65_RS01050at 238.575 kb on + strand, within DZA65_RS01050at 238.575 kb on + strand, within DZA65_RS01050at 238.576 kb on - strand, within DZA65_RS01050at 238.576 kb on - strand, within DZA65_RS01050at 238.576 kb on - strand, within DZA65_RS01050at 238.576 kb on - strand, within DZA65_RS01050at 238.627 kb on - strand, within DZA65_RS01050at 238.720 kb on + strand, within DZA65_RS01050at 238.720 kb on + strand, within DZA65_RS01050at 238.720 kb on + strand, within DZA65_RS01050at 238.723 kb on + strand, within DZA65_RS01050at 238.724 kb on - strand, within DZA65_RS01050at 238.724 kb on - strand, within DZA65_RS01050at 238.724 kb on - strand, within DZA65_RS01050at 238.744 kb on - strand, within DZA65_RS01050at 238.837 kb on + strand, within DZA65_RS01050at 238.838 kb on - strand, within DZA65_RS01050at 238.838 kb on - strand, within DZA65_RS01050at 238.871 kb on - strand, within DZA65_RS01050at 238.898 kb on + strand, within DZA65_RS01050at 238.898 kb on + strand, within DZA65_RS01050at 238.898 kb on + strand, within DZA65_RS01050at 238.898 kb on + strand, within DZA65_RS01050at 238.898 kb on + strand, within DZA65_RS01050at 238.899 kb on - strandat 238.899 kb on - strand, within DZA65_RS01050at 238.899 kb on - strand, within DZA65_RS01050at 238.948 kb on + strand, within DZA65_RS01050at 239.032 kb on + strand, within DZA65_RS01050at 239.089 kb on - strand, within DZA65_RS01050at 239.089 kb on - strand, within DZA65_RS01050at 239.144 kb on + strand, within DZA65_RS01050at 239.144 kb on + strand, within DZA65_RS01050at 239.144 kb on + strand, within DZA65_RS01050at 239.145 kb on - strand, within DZA65_RS01050at 239.145 kb on - strand, within DZA65_RS01050at 239.145 kb on - strand, within DZA65_RS01050at 239.146 kb on + strand, within DZA65_RS01050at 239.146 kb on + strand, within DZA65_RS01050at 239.146 kb on + strand, within DZA65_RS01050at 239.147 kb on - strand, within DZA65_RS01050at 239.147 kb on - strand, within DZA65_RS01050at 239.147 kb on - strand, within DZA65_RS01050at 239.152 kb on + strand, within DZA65_RS01050at 239.152 kb on + strand, within DZA65_RS01050at 239.153 kb on - strand, within DZA65_RS01050at 239.153 kb on - strand, within DZA65_RS01050at 239.153 kb on - strand, within DZA65_RS01050at 239.216 kb on + strand, within DZA65_RS01050at 239.230 kb on + strand, within DZA65_RS01050at 239.265 kb on + strand, within DZA65_RS01050at 239.266 kb on - strand, within DZA65_RS01050at 239.386 kb on + strandat 239.419 kb on + strandat 239.419 kb on + strandat 239.419 kb on + strandat 239.420 kb on - strandat 239.420 kb on - strandat 239.420 kb on - strandat 239.430 kb on + strandat 239.430 kb on + strandat 239.430 kb on + strandat 239.431 kb on - strandat 239.431 kb on - strandat 239.431 kb on - strandat 239.434 kb on + strandat 239.434 kb on + strandat 239.435 kb on - strandat 239.435 kb on - strandat 239.435 kb on - strandat 239.456 kb on + strandat 239.463 kb on + strandat 239.463 kb on + strandat 239.464 kb on - strandat 239.476 kb on + strandat 239.476 kb on + strandat 239.476 kb on + strandat 239.477 kb on - strandat 239.477 kb on - strandat 239.477 kb on - strandat 239.477 kb on - strandat 239.477 kb on - strandat 239.487 kb on + strandat 239.487 kb on + strandat 239.487 kb on + strandat 239.488 kb on - strandat 240.014 kb on + strandat 240.075 kb on - strandat 240.103 kb on - strandat 240.103 kb on - strandat 240.103 kb on - strandat 240.103 kb on - strandat 240.103 kb on - strandat 240.103 kb on - strandat 240.103 kb on - strandat 240.103 kb on - strandat 240.105 kb on - strandat 240.105 kb on - strandat 240.559 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Upstate
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238,487 + DZA65_RS01050 0.33 -0.6
238,522 + DZA65_RS01050 0.35 -1.2
238,522 + DZA65_RS01050 0.35 +0.9
238,523 - DZA65_RS01050 0.36 -0.5
238,523 - DZA65_RS01050 0.36 -1.1
238,523 - DZA65_RS01050 0.36 -0.6
238,523 - DZA65_RS01050 0.36 +0.1
238,571 + DZA65_RS01050 0.39 +0.7
238,571 + DZA65_RS01050 0.39 -0.9
238,571 + DZA65_RS01050 0.39 +1.2
238,571 + DZA65_RS01050 0.39 -0.8
238,572 - DZA65_RS01050 0.39 -1.6
238,572 - DZA65_RS01050 0.39 -1.1
238,575 + DZA65_RS01050 0.39 -2.7
238,575 + DZA65_RS01050 0.39 -0.6
238,575 + DZA65_RS01050 0.39 -0.3
238,576 - DZA65_RS01050 0.39 -0.4
238,576 - DZA65_RS01050 0.39 -0.3
238,576 - DZA65_RS01050 0.39 -0.3
238,576 - DZA65_RS01050 0.39 -1.0
238,627 - DZA65_RS01050 0.43 +0.2
238,720 + DZA65_RS01050 0.49 -1.9
238,720 + DZA65_RS01050 0.49 +0.1
238,720 + DZA65_RS01050 0.49 +1.1
238,723 + DZA65_RS01050 0.49 +0.4
238,724 - DZA65_RS01050 0.49 -1.8
238,724 - DZA65_RS01050 0.49 +0.5
238,724 - DZA65_RS01050 0.49 -1.3
238,744 - DZA65_RS01050 0.51 -0.4
238,837 + DZA65_RS01050 0.57 -1.4
238,838 - DZA65_RS01050 0.57 -0.1
238,838 - DZA65_RS01050 0.57 +0.1
238,871 - DZA65_RS01050 0.60 -0.2
238,898 + DZA65_RS01050 0.61 -1.8
238,898 + DZA65_RS01050 0.61 -1.3
238,898 + DZA65_RS01050 0.61 -0.3
238,898 + DZA65_RS01050 0.61 -0.6
238,898 + DZA65_RS01050 0.61 -2.2
238,899 - -1.8
238,899 - DZA65_RS01050 0.61 +1.7
238,899 - DZA65_RS01050 0.61 -1.2
238,948 + DZA65_RS01050 0.65 -0.6
239,032 + DZA65_RS01050 0.71 +0.1
239,089 - DZA65_RS01050 0.75 -0.3
239,089 - DZA65_RS01050 0.75 -0.4
239,144 + DZA65_RS01050 0.78 -0.3
239,144 + DZA65_RS01050 0.78 -0.1
239,144 + DZA65_RS01050 0.78 -1.3
239,145 - DZA65_RS01050 0.78 -0.9
239,145 - DZA65_RS01050 0.78 -1.0
239,145 - DZA65_RS01050 0.78 -0.6
239,146 + DZA65_RS01050 0.78 -2.3
239,146 + DZA65_RS01050 0.78 +0.5
239,146 + DZA65_RS01050 0.78 -2.5
239,147 - DZA65_RS01050 0.79 +0.1
239,147 - DZA65_RS01050 0.79 -0.6
239,147 - DZA65_RS01050 0.79 -1.0
239,152 + DZA65_RS01050 0.79 -1.0
239,152 + DZA65_RS01050 0.79 -0.9
239,153 - DZA65_RS01050 0.79 +0.1
239,153 - DZA65_RS01050 0.79 -0.6
239,153 - DZA65_RS01050 0.79 -0.3
239,216 + DZA65_RS01050 0.83 -2.0
239,230 + DZA65_RS01050 0.84 -2.0
239,265 + DZA65_RS01050 0.87 -0.6
239,266 - DZA65_RS01050 0.87 -0.5
239,386 + -1.1
239,419 + +0.3
239,419 + +1.0
239,419 + +1.4
239,420 - -1.2
239,420 - -0.3
239,420 - -1.7
239,430 + -0.7
239,430 + +1.7
239,430 + +1.7
239,431 - +1.7
239,431 - -0.8
239,431 - +0.1
239,434 + -1.0
239,434 + -0.3
239,435 - -1.8
239,435 - +0.5
239,435 - -1.8
239,456 + -0.6
239,463 + +0.0
239,463 + +0.0
239,464 - +0.1
239,476 + -0.3
239,476 + -0.6
239,476 + +0.7
239,477 - +0.7
239,477 - -0.9
239,477 - -0.6
239,477 - +0.1
239,477 - +0.0
239,487 + -0.6
239,487 + -0.6
239,487 + -1.0
239,488 - -3.2
240,014 + +0.1
240,075 - +1.7
240,103 - +1.7
240,103 - -1.5
240,103 - +1.5
240,103 - -1.3
240,103 - +0.7
240,103 - +0.5
240,103 - -0.1
240,103 - +1.2
240,105 - +0.5
240,105 - -0.3
240,559 + -0.9

Or see this region's nucleotide sequence