Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21020

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,544,797	+		DZA65_RS21015	0.59	+0.5
4,544,797	+		DZA65_RS21015	0.59	-0.3
4,544,798	-		DZA65_RS21015	0.59	-0.3
4,544,808	+		DZA65_RS21015	0.60	-0.5
4,544,809	-		DZA65_RS21015	0.60	+1.9
4,544,862	+		DZA65_RS21015	0.63	+0.0
4,544,862	+		DZA65_RS21015	0.63	-0.6
4,544,862	+		DZA65_RS21015	0.63	-0.5
4,544,863	-		DZA65_RS21015	0.63	-0.7
4,544,952	+		DZA65_RS21015	0.69	-0.4
4,544,952	+		DZA65_RS21015	0.69	+0.1
4,544,953	-		DZA65_RS21015	0.69	-0.1
4,544,953	-		DZA65_RS21015	0.69	-0.8
4,544,953	-		DZA65_RS21015	0.69	+1.3
4,544,992	+		DZA65_RS21015	0.71	-1.5
4,544,992	+		DZA65_RS21015	0.71	+2.0
4,544,992	+		DZA65_RS21015	0.71	+0.7
4,544,992	+		DZA65_RS21015	0.71	-2.4
4,544,992	+		DZA65_RS21015	0.71	+0.5
4,544,993	-		DZA65_RS21015	0.71	+0.6
4,544,993	-		DZA65_RS21015	0.71	+1.3
4,544,993	-		DZA65_RS21015	0.71	+0.7
4,544,993	-		DZA65_RS21015	0.71	+0.3
4,545,156	+		DZA65_RS21015	0.81	+1.0
4,545,156	+		DZA65_RS21015	0.81	-0.2
4,545,156	+		DZA65_RS21015	0.81	-0.0
4,545,156	+		DZA65_RS21015	0.81	-0.2
4,545,157	-		DZA65_RS21015	0.81	-0.3
4,545,157	-		DZA65_RS21015	0.81	-1.1
4,545,157	-		DZA65_RS21015	0.81	-1.7
4,545,157	-		DZA65_RS21015	0.81	-1.5
4,545,157	-		DZA65_RS21015	0.81	-1.1
4,545,157	-				-0.5
4,545,157	-		DZA65_RS21015	0.81	+0.3
4,545,157	-		DZA65_RS21015	0.81	-0.3
4,545,160	+		DZA65_RS21015	0.81	-0.5
4,545,160	+		DZA65_RS21015	0.81	+0.3
4,545,160	+		DZA65_RS21015	0.81	-0.7
4,545,160	+		DZA65_RS21015	0.81	+1.3
4,545,160	+		DZA65_RS21015	0.81	-0.9
4,545,160	+		DZA65_RS21015	0.81	-0.1
4,545,160	+		DZA65_RS21015	0.81	+0.3
4,545,161	-		DZA65_RS21015	0.81	+0.4
4,545,161	-		DZA65_RS21015	0.81	+0.1
4,545,161	-		DZA65_RS21015	0.81	-1.5
4,545,161	-		DZA65_RS21015	0.81	+0.5
4,545,161	-		DZA65_RS21015	0.81	-1.5
4,545,161	-		DZA65_RS21015	0.81	-0.7
4,545,161	-		DZA65_RS21015	0.81	+0.1
4,545,161	-		DZA65_RS21015	0.81	+0.1
4,545,161	-		DZA65_RS21015	0.81	+0.7
4,545,161	-		DZA65_RS21015	0.81	+0.8
4,545,161	-		DZA65_RS21015	0.81	-1.5
4,545,317	-				+0.6
4,545,369	-				-1.0
4,545,468	-				+0.5
4,545,502	+				+1.3
4,545,502	+				-0.9
4,545,503	-				+0.5
4,545,512	+				-0.5
4,545,512	+				-0.7
4,545,512	+				-0.3
4,545,513	-				+1.4
4,545,535	+				-0.8
4,545,576	+				-0.2
4,545,576	+				-1.1
4,545,576	+				-0.5
4,545,588	+				-0.2
4,545,588	+				+0.6
4,545,638	-				-0.2
4,545,704	+				+0.3
4,545,704	+				+1.8
4,545,737	+				+0.4
4,545,737	+				-0.3
4,545,737	+				-1.1
4,545,737	+				+0.1
4,545,738	-				+1.0
4,545,744	+				-0.5
4,545,744	+				+1.5
4,545,744	+				-0.1
4,545,744	+				-1.1
4,545,744	+				+1.3
4,545,745	-				-0.6
4,545,745	-				+1.0
4,545,762	+				-0.6
4,545,763	-				-1.9
4,545,763	-				-0.9
4,545,763	-				-1.0
4,545,763	-				-0.3
4,545,766	+				+0.1
4,545,766	+				-0.2
4,545,766	+				+0.5
4,545,767	-				-2.1
4,545,767	-				+2.1
4,545,767	-				+1.0
4,545,767	-				+0.3
4,545,775	+				+1.8
4,545,887	+				+0.7
4,545,887	+				-0.9
4,545,888	-				-1.2
4,545,888	-				+0.1
4,545,890	+				-0.8
4,545,890	+				+3.3
4,545,890	+				-2.1
4,545,891	-				-0.2
4,545,891	-				+1.6
4,545,891	-				+0.8
4,545,891	-				+0.2
4,545,891	-				-1.3
4,545,891	-				-0.5
4,545,891	-				-0.1
4,545,891	-				+0.3
4,545,891	-				-0.7
4,545,891	-				+0.3
4,545,891	-				+0.7
4,545,926	+		DZA65_RS21020	0.12	-1.8
4,545,927	-		DZA65_RS21020	0.12	-0.1
4,545,927	-		DZA65_RS21020	0.12	-0.4
4,545,927	-		DZA65_RS21020	0.12	+2.3
4,545,927	-		DZA65_RS21020	0.12	+1.8
4,545,934	-		DZA65_RS21020	0.12	-0.9
4,546,047	+		DZA65_RS21020	0.21	-1.3
4,546,047	+		DZA65_RS21020	0.21	-0.7
4,546,048	-		DZA65_RS21020	0.21	-0.1
4,546,094	-		DZA65_RS21020	0.24	+0.7
4,546,337	+		DZA65_RS21020	0.42	+0.8
4,546,337	+		DZA65_RS21020	0.42	+2.8
4,546,337	+		DZA65_RS21020	0.42	-2.1
4,546,337	+		DZA65_RS21020	0.42	-0.1
4,546,337	+				-2.3
4,546,337	+		DZA65_RS21020	0.42	+0.4
4,546,337	+		DZA65_RS21020	0.42	-0.1
4,546,337	+		DZA65_RS21020	0.42	-0.2
4,546,337	+		DZA65_RS21020	0.42	+0.3
4,546,337	+		DZA65_RS21020	0.42	-0.5
4,546,337	+		DZA65_RS21020	0.42	+0.1
4,546,337	+		DZA65_RS21020	0.42	+1.0
4,546,337	+		DZA65_RS21020	0.42	-1.3
4,546,337	+		DZA65_RS21020	0.42	+1.0
4,546,338	-		DZA65_RS21020	0.42	-1.1
4,546,338	-		DZA65_RS21020	0.42	-0.3
4,546,338	-		DZA65_RS21020	0.42	-0.3
4,546,338	-		DZA65_RS21020	0.42	+1.0
4,546,338	-		DZA65_RS21020	0.42	+0.3
4,546,338	-		DZA65_RS21020	0.42	+0.1
4,546,338	-		DZA65_RS21020	0.42	-1.0
4,546,338	-		DZA65_RS21020	0.42	+0.3
4,546,338	-		DZA65_RS21020	0.42	-0.1
4,546,338	-		DZA65_RS21020	0.42	-0.5
4,546,338	-		DZA65_RS21020	0.42	-1.4
4,546,338	-		DZA65_RS21020	0.42	-2.8
4,546,338	-		DZA65_RS21020	0.42	+0.3
4,546,339	+		DZA65_RS21020	0.42	-2.4
4,546,340	-		DZA65_RS21020	0.42	-0.1
4,546,433	+				-0.3
4,546,457	+		DZA65_RS21020	0.51	+0.1
4,546,457	+		DZA65_RS21020	0.51	+0.5
4,546,457	+		DZA65_RS21020	0.51	+0.3
4,546,457	+		DZA65_RS21020	0.51	-0.8
4,546,458	-		DZA65_RS21020	0.51	-1.3
4,546,458	-		DZA65_RS21020	0.51	-1.7
4,546,460	-		DZA65_RS21020	0.51	-0.9
4,546,460	-		DZA65_RS21020	0.51	+0.8
4,546,508	+		DZA65_RS21020	0.55	-0.2
4,546,508	+		DZA65_RS21020	0.55	+1.3
4,546,509	-		DZA65_RS21020	0.55	-0.5
4,546,509	-		DZA65_RS21020	0.55	+0.5
4,546,509	-		DZA65_RS21020	0.55	+1.6
4,546,509	-		DZA65_RS21020	0.55	+0.0
4,546,509	-		DZA65_RS21020	0.55	+1.0
4,546,509	-		DZA65_RS21020	0.55	-0.6
4,546,509	-		DZA65_RS21020	0.55	-0.6
4,546,536	-		DZA65_RS21020	0.57	+0.1
4,546,601	+		DZA65_RS21020	0.62	+0.3
4,546,633	+		DZA65_RS21020	0.64	-2.8
4,546,633	+		DZA65_RS21020	0.64	-2.3
4,546,634	-		DZA65_RS21020	0.64	+0.3
4,546,649	+				-0.7
4,546,649	+		DZA65_RS21020	0.65	-2.4
4,546,649	+		DZA65_RS21020	0.65	+0.3
4,546,650	-		DZA65_RS21020	0.65	-0.3
4,546,650	-		DZA65_RS21020	0.65	+0.0
4,546,658	+		DZA65_RS21020	0.66	+0.3
4,546,664	+		DZA65_RS21020	0.66	-0.7
4,546,665	-		DZA65_RS21020	0.67	+0.8
4,546,665	-		DZA65_RS21020	0.67	-0.3
4,546,665	-		DZA65_RS21020	0.67	+0.9
4,546,746	+		DZA65_RS21020	0.73	-0.4
4,546,746	+		DZA65_RS21020	0.73	+1.3
4,546,747	-		DZA65_RS21020	0.73	+1.1
4,546,775	-		DZA65_RS21020	0.75	-0.9
4,546,781	+		DZA65_RS21020	0.75	-1.5
4,546,781	+		DZA65_RS21020	0.75	+1.3
4,546,782	-		DZA65_RS21020	0.75	+0.6
4,546,782	-		DZA65_RS21020	0.75	+2.0
4,546,850	+				+0.8
4,546,851	-		DZA65_RS21020	0.80	-0.5
4,546,943	+		DZA65_RS21020	0.87	+0.0
4,546,982	+				-0.1
4,547,040	+				-0.7
4,547,151	+				-1.2
4,547,151	+				-1.3
4,547,233	-				+1.8
4,547,275	+				-1.7
4,547,276	-				-0.2
4,547,276	-				-1.1
4,547,276	-				+0.5
4,547,283	+				-0.5
4,547,283	+				+1.6
4,547,284	-				+3.7
4,547,329	-				-1.1
4,547,329	-				-0.1
4,547,343	+				+1.3
4,547,343	+				+1.3
4,547,344	-				-1.7
4,547,344	-				-0.6
4,547,344	-				+0.3
4,547,398	+		DZA65_RS21025	0.11	-2.4
4,547,398	+		DZA65_RS21025	0.11	+3.3
4,547,398	+		DZA65_RS21025	0.11	-0.0
4,547,398	+		DZA65_RS21025	0.11	-1.6
4,547,398	+		DZA65_RS21025	0.11	-0.7
4,547,398	+		DZA65_RS21025	0.11	-1.5
4,547,398	+		DZA65_RS21025	0.11	-1.5
4,547,398	+		DZA65_RS21025	0.11	-2.3
4,547,398	+		DZA65_RS21025	0.11	+0.3
4,547,399	-		DZA65_RS21025	0.11	-1.3
4,547,399	-		DZA65_RS21025	0.11	+0.6
4,547,399	-		DZA65_RS21025	0.11	-0.3
4,547,399	-		DZA65_RS21025	0.11	-0.6
4,547,399	-		DZA65_RS21025	0.11	+0.3
4,547,399	-		DZA65_RS21025	0.11	-1.2
4,547,399	-		DZA65_RS21025	0.11	-1.1
4,547,399	-		DZA65_RS21025	0.11	-1.9
4,547,399	-		DZA65_RS21025	0.11	-0.3
4,547,463	+		DZA65_RS21025	0.19	-1.1
4,547,464	-		DZA65_RS21025	0.19	-1.7
4,547,464	-				-0.3
4,547,464	-		DZA65_RS21025	0.19	+0.9
4,547,464	-		DZA65_RS21025	0.19	+0.5
4,547,506	+		DZA65_RS21025	0.24	+0.6
4,547,506	+		DZA65_RS21025	0.24	+0.3
4,547,507	-		DZA65_RS21025	0.24	-1.9
4,547,507	-		DZA65_RS21025	0.24	-2.1
4,547,728	-		DZA65_RS21025	0.52	-1.2
4,547,803	-		DZA65_RS21025	0.61	-0.3
4,547,832	+		DZA65_RS21025	0.65	+1.2
4,547,832	+		DZA65_RS21025	0.65	-0.5
4,547,832	+		DZA65_RS21025	0.65	+0.3
4,547,832	+		DZA65_RS21025	0.65	-0.3
4,547,832	+		DZA65_RS21025	0.65	-0.5
4,547,832	+		DZA65_RS21025	0.65	-1.6
4,547,833	-		DZA65_RS21025	0.65	+1.3
4,547,833	-		DZA65_RS21025	0.65	-0.7
4,547,833	-		DZA65_RS21025	0.65	-2.0
4,547,833	-		DZA65_RS21025	0.65	-2.4
4,547,905	+		DZA65_RS21025	0.74	-0.0
4,547,906	-		DZA65_RS21025	0.74	+1.5
4,547,906	-		DZA65_RS21025	0.74	+0.9
4,547,906	-		DZA65_RS21025	0.74	-0.9
4,547,906	-		DZA65_RS21025	0.74	+2.4
4,547,906	-		DZA65_RS21025	0.74	-0.3
4,547,929	+		DZA65_RS21025	0.77	+0.6
4,547,929	+		DZA65_RS21025	0.77	-0.0
4,547,929	+		DZA65_RS21025	0.77	-0.5
4,547,929	+		DZA65_RS21025	0.77	+0.8
4,547,929	+		DZA65_RS21025	0.77	-0.1
4,547,929	+		DZA65_RS21025	0.77	-2.0
4,547,929	+		DZA65_RS21025	0.77	-0.1
4,547,929	+		DZA65_RS21025	0.77	+0.7
4,547,929	+		DZA65_RS21025	0.77	+0.9
4,547,929	+		DZA65_RS21025	0.77	-1.4
4,547,930	-		DZA65_RS21025	0.77	-2.2
4,547,930	-		DZA65_RS21025	0.77	+0.9
4,547,930	-		DZA65_RS21025	0.77	-0.2
4,547,930	-		DZA65_RS21025	0.77	+0.3
4,547,930	-		DZA65_RS21025	0.77	+0.5
4,547,937	+		DZA65_RS21025	0.78	+2.3
4,547,937	+		DZA65_RS21025	0.78	+0.8
4,547,937	+		DZA65_RS21025	0.78	-2.0
4,547,937	+		DZA65_RS21025	0.78	-0.7
4,547,937	+		DZA65_RS21025	0.78	+0.4
4,547,937	+		DZA65_RS21025	0.78	-0.7
4,547,937	+		DZA65_RS21025	0.78	+1.6
4,547,937	+		DZA65_RS21025	0.78	-0.3
4,547,938	-		DZA65_RS21025	0.78	-1.5
4,547,938	-		DZA65_RS21025	0.78	-0.7
4,547,938	-		DZA65_RS21025	0.78	-1.1
4,547,938	-		DZA65_RS21025	0.78	+0.3
4,547,938	-		DZA65_RS21025	0.78	-0.1
4,547,938	-		DZA65_RS21025	0.78	-0.1
4,547,981	-		DZA65_RS21025	0.83	+2.6
4,548,051	+				-0.5
4,548,051	+				-1.1
4,548,051	+				+0.8
4,548,051	+				+0.3
4,548,051	+				+2.0
4,548,052	-				+2.2
4,548,114	+				+0.3
4,548,115	-				-0.1
4,548,115	-				-0.8