Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20000

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,326,537	+		DZA65_RS19990	0.83	-0.2
4,326,538	-		DZA65_RS19990	0.83	-0.1
4,326,538	-		DZA65_RS19990	0.83	+0.6
4,326,561	+		DZA65_RS19990	0.85	-2.9
4,326,569	+		DZA65_RS19990	0.85	+0.3
4,326,569	+		DZA65_RS19990	0.85	+0.2
4,326,570	-		DZA65_RS19990	0.85	-0.8
4,326,588	+		DZA65_RS19990	0.86	+0.4
4,326,633	+		DZA65_RS19990	0.89	+1.2
4,326,633	+		DZA65_RS19990	0.89	-1.4
4,326,913	+				-0.0
4,326,913	+				+0.2
4,326,913	+				-1.3
4,326,914	-				-1.5
4,326,914	-				-0.7
4,326,934	+				+1.2
4,326,934	+				-0.9
4,326,935	-				+1.9
4,326,935	-				+1.8
4,326,935	-				-0.8
4,326,949	+				-1.5
4,326,949	+				-0.1
4,326,952	+				-1.8
4,326,952	+				-0.7
4,326,952	+				+1.2
4,326,952	+				+0.4
4,326,952	+				+0.3
4,326,952	+				-1.8
4,326,952	+				+0.3
4,326,952	+				-0.1
4,326,952	+				+0.6
4,326,952	+				+1.7
4,326,952	+				-0.6
4,326,953	-				-0.8
4,326,953	-				-1.3
4,326,953	-				+1.2
4,326,953	-				-1.7
4,326,953	-				-0.4
4,326,953	-				+0.1
4,326,953	-				-0.8
4,326,969	+				+0.7
4,326,970	-				-0.4
4,327,002	+				-1.4
4,327,003	-				+2.3
4,327,003	-				-0.1
4,327,009	+				-1.0
4,327,009	+				-0.9
4,327,009	+				-0.1
4,327,009	+				-0.5
4,327,009	+				-0.1
4,327,010	-				+1.6
4,327,010	-				-3.0
4,327,010	-				-0.4
4,327,010	-				+0.9
4,327,010	-				-1.1
4,327,025	-				-1.0
4,327,113	-		DZA65_RS19995	0.19	+0.4
4,327,158	-		DZA65_RS19995	0.30	-0.3
4,327,224	+		DZA65_RS19995	0.47	+0.9
4,327,225	-		DZA65_RS19995	0.47	-2.3
4,327,225	-		DZA65_RS19995	0.47	+0.0
4,327,225	-		DZA65_RS19995	0.47	+0.1
4,327,225	-		DZA65_RS19995	0.47	+2.4
4,327,267	+		DZA65_RS19995	0.57	-0.6
4,327,267	+		DZA65_RS19995	0.57	-1.6
4,327,267	+		DZA65_RS19995	0.57	+0.2
4,327,267	+		DZA65_RS19995	0.57	-0.4
4,327,268	-		DZA65_RS19995	0.58	+0.2
4,327,268	-		DZA65_RS19995	0.58	+0.0
4,327,423	+				-0.7
4,327,438	-				-2.1
4,327,438	-				-1.4
4,327,449	+				-0.4
4,327,449	+				+0.2
4,327,450	-				+1.1
4,327,450	-				-1.4
4,327,468	+				+2.2
4,327,468	+				+1.2
4,327,469	-				-0.7
4,327,495	-		DZA65_RS20000	0.10	-0.6
4,327,495	-		DZA65_RS20000	0.10	-0.1
4,327,495	-		DZA65_RS20000	0.10	+0.2
4,327,528	+		DZA65_RS20000	0.17	+0.2
4,327,528	+		DZA65_RS20000	0.17	-1.5
4,327,528	+		DZA65_RS20000	0.17	-0.0
4,327,528	+		DZA65_RS20000	0.17	+1.0
4,327,529	-		DZA65_RS20000	0.17	-0.9
4,327,529	-		DZA65_RS20000	0.17	+0.6
4,327,529	-		DZA65_RS20000	0.17	-0.0
4,327,529	-		DZA65_RS20000	0.17	-1.8
4,327,542	-		DZA65_RS20000	0.20	+0.3
4,327,573	+		DZA65_RS20000	0.27	-0.4
4,327,581	+		DZA65_RS20000	0.28	+0.9
4,327,581	+		DZA65_RS20000	0.28	-0.2
4,327,582	-		DZA65_RS20000	0.28	-1.0
4,327,612	+		DZA65_RS20000	0.35	+0.7
4,327,612	+		DZA65_RS20000	0.35	+0.6
4,327,613	-		DZA65_RS20000	0.35	-2.6
4,327,613	-		DZA65_RS20000	0.35	-2.6
4,327,613	-		DZA65_RS20000	0.35	+0.4
4,327,615	+		DZA65_RS20000	0.35	-0.4
4,327,615	+		DZA65_RS20000	0.35	-0.6
4,327,615	+		DZA65_RS20000	0.35	+1.2
4,327,616	-		DZA65_RS20000	0.36	+1.6
4,327,616	-		DZA65_RS20000	0.36	+1.2
4,327,616	-		DZA65_RS20000	0.36	-1.4
4,327,616	-		DZA65_RS20000	0.36	-0.0
4,327,616	-		DZA65_RS20000	0.36	-2.5
4,327,616	-		DZA65_RS20000	0.36	-1.0
4,327,616	-		DZA65_RS20000	0.36	-0.6
4,327,616	-		DZA65_RS20000	0.36	+0.6
4,327,616	-		DZA65_RS20000	0.36	+0.2
4,327,616	-		DZA65_RS20000	0.36	-2.0
4,327,616	-		DZA65_RS20000	0.36	-0.4
4,327,633	+		DZA65_RS20000	0.39	-1.6
4,327,690	+		DZA65_RS20000	0.51	+1.4
4,327,690	+		DZA65_RS20000	0.51	-2.0
4,327,690	+		DZA65_RS20000	0.51	-0.0
4,327,691	-		DZA65_RS20000	0.52	-0.8
4,327,717	+		DZA65_RS20000	0.57	+0.2
4,327,717	+		DZA65_RS20000	0.57	+0.3
4,327,718	-		DZA65_RS20000	0.57	-0.0
4,327,718	-		DZA65_RS20000	0.57	+1.2
4,327,718	-		DZA65_RS20000	0.57	-1.3
4,327,734	+		DZA65_RS20000	0.61	+0.1
4,327,734	+		DZA65_RS20000	0.61	-0.7
4,327,734	+		DZA65_RS20000	0.61	+1.7
4,327,735	-		DZA65_RS20000	0.61	-1.0
4,327,735	-		DZA65_RS20000	0.61	+1.8
4,327,735	-		DZA65_RS20000	0.61	-1.4
4,327,754	-		DZA65_RS20000	0.65	-1.1
4,327,754	-		DZA65_RS20000	0.65	-0.8
4,327,795	+		DZA65_RS20000	0.74	+1.7
4,327,795	+		DZA65_RS20000	0.74	+0.2
4,327,795	+		DZA65_RS20000	0.74	+1.4
4,327,795	+		DZA65_RS20000	0.74	-1.4
4,327,796	-		DZA65_RS20000	0.74	-1.2
4,327,796	-		DZA65_RS20000	0.74	-0.6
4,327,796	-		DZA65_RS20000	0.74	+1.0
4,327,796	-		DZA65_RS20000	0.74	+0.5
4,327,796	-		DZA65_RS20000	0.74	+0.4
4,327,796	-		DZA65_RS20000	0.74	-0.1
4,327,797	+		DZA65_RS20000	0.74	-2.7
4,327,797	+		DZA65_RS20000	0.74	+0.9
4,327,798	-		DZA65_RS20000	0.74	+1.2
4,327,849	+		DZA65_RS20000	0.85	-0.4
4,327,849	+		DZA65_RS20000	0.85	+0.3
4,327,849	+		DZA65_RS20000	0.85	-0.4
4,327,850	-		DZA65_RS20000	0.85	+0.5
4,327,850	-		DZA65_RS20000	0.85	-0.4
4,327,850	-		DZA65_RS20000	0.85	-0.3
4,327,850	-		DZA65_RS20000	0.85	+0.2
4,327,860	+		DZA65_RS20000	0.87	-0.2
4,327,860	+		DZA65_RS20000	0.87	-0.1
4,327,861	-		DZA65_RS20000	0.88	-1.1
4,327,861	-		DZA65_RS20000	0.88	+1.9
4,327,861	-		DZA65_RS20000	0.88	+0.5
4,327,861	-		DZA65_RS20000	0.88	-1.6
4,327,861	-		DZA65_RS20000	0.88	+0.2
4,327,861	-		DZA65_RS20000	0.88	+0.7
4,327,861	-		DZA65_RS20000	0.88	-1.6
4,327,866	+		DZA65_RS20000	0.89	-2.6
4,327,867	-		DZA65_RS20000	0.89	-0.5
4,327,867	-		DZA65_RS20000	0.89	+0.5
4,327,877	+				+0.5
4,327,878	-				+1.7
4,327,878	-				+0.5
4,327,878	-				-1.4
4,327,878	-				+0.0
4,327,885	+				+1.2
4,327,981	+		DZA65_RS20005	0.38	+0.5
4,327,982	-		DZA65_RS20005	0.38	-1.7
4,327,982	-		DZA65_RS20005	0.38	-1.4
4,327,982	-		DZA65_RS20005	0.38	-0.0
4,328,009	+		DZA65_RS20005	0.48	-0.4
4,328,048	+		DZA65_RS20005	0.64	+1.8
4,328,123	+				-0.4
4,328,123	+				+0.6
4,328,123	+				+0.1
4,328,124	-				-0.8
4,328,183	+				-1.1
4,328,199	-				+0.0
4,328,199	-				-0.8
4,328,204	+				-0.7
4,328,205	-				+0.2
4,328,206	+				-0.4
4,328,206	+				-2.1
4,328,207	-				+0.0
4,328,207	-				+1.2
4,328,210	+				-0.0
4,328,222	+				-1.1
4,328,222	+				-0.4
4,328,244	-				+0.9
4,328,252	+				-0.1
4,328,348	+				-0.4
4,328,348	+				-1.6
4,328,348	+				-1.4
4,328,349	-				-0.0
4,328,349	-				+0.4
4,328,349	-				+0.5
4,328,349	-				-0.9
4,328,349	-				-2.0
4,328,349	-				-0.6
4,328,362	+				+2.0
4,328,363	-				+0.6
4,328,363	-				+0.5
4,328,370	+				-1.0
4,328,370	+				+1.2
4,328,370	+				-0.5
4,328,371	-				+0.4
4,328,371	-				-0.0
4,328,388	+				-0.4
4,328,388	+				+2.0
4,328,389	-				-0.9
4,328,389	-				+0.8
4,328,389	-				-1.1
4,328,389	-				+0.0
4,328,533	-		DZA65_RS20010	0.24	+0.9
4,328,602	+		DZA65_RS20010	0.34	+0.1
4,328,602	+		DZA65_RS20010	0.34	-0.8
4,328,603	-		DZA65_RS20010	0.34	+1.0
4,328,603	-		DZA65_RS20010	0.34	-0.2
4,328,603	-		DZA65_RS20010	0.34	+0.2
4,328,684	+		DZA65_RS20010	0.46	-0.6
4,328,684	+		DZA65_RS20010	0.46	+1.5
4,328,685	-		DZA65_RS20010	0.46	+2.8
4,328,685	-		DZA65_RS20010	0.46	-0.2
4,328,685	-		DZA65_RS20010	0.46	-1.1
4,328,689	-		DZA65_RS20010	0.47	-2.0
4,328,722	-		DZA65_RS20010	0.52	-2.7