Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18830

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,060,916	+		DZA65_RS18825	0.62	-1.2
4,061,072	+		DZA65_RS18825	0.68	-1.0
4,061,072	+		DZA65_RS18825	0.68	-0.8
4,061,072	+		DZA65_RS18825	0.68	-1.7
4,061,072	+		DZA65_RS18825	0.68	-0.7
4,061,073	-		DZA65_RS18825	0.68	-0.9
4,061,074	+		DZA65_RS18825	0.68	-0.2
4,061,074	+		DZA65_RS18825	0.68	-0.2
4,061,321	+		DZA65_RS18825	0.77	+0.0
4,061,321	+		DZA65_RS18825	0.77	-1.9
4,061,412	+		DZA65_RS18825	0.81	-0.3
4,061,412	+		DZA65_RS18825	0.81	+0.1
4,061,412	+		DZA65_RS18825	0.81	-1.1
4,061,412	+		DZA65_RS18825	0.81	-1.1
4,061,412	+		DZA65_RS18825	0.81	+0.1
4,061,412	+		DZA65_RS18825	0.81	+1.1
4,061,412	+		DZA65_RS18825	0.81	-0.6
4,061,412	+		DZA65_RS18825	0.81	-0.7
4,061,413	-		DZA65_RS18825	0.81	+0.7
4,061,413	-		DZA65_RS18825	0.81	+0.4
4,061,413	-		DZA65_RS18825	0.81	+2.3
4,061,413	-		DZA65_RS18825	0.81	-0.9
4,061,413	-		DZA65_RS18825	0.81	+1.1
4,061,479	+		DZA65_RS18825	0.84	+0.8
4,061,480	-		DZA65_RS18825	0.84	-0.4
4,061,480	-		DZA65_RS18825	0.84	-0.5
4,061,480	-		DZA65_RS18825	0.84	+0.9
4,061,510	+		DZA65_RS18825	0.85	-0.4
4,061,510	+		DZA65_RS18825	0.85	-0.5
4,061,510	+		DZA65_RS18825	0.85	+0.7
4,061,510	+		DZA65_RS18825	0.85	-1.5
4,061,510	+		DZA65_RS18825	0.85	-0.1
4,061,510	+		DZA65_RS18825	0.85	-2.6
4,061,510	+		DZA65_RS18825	0.85	-2.2
4,061,510	+		DZA65_RS18825	0.85	-0.2
4,061,510	+				-0.1
4,061,511	-		DZA65_RS18825	0.85	-1.3
4,061,511	-		DZA65_RS18825	0.85	+0.2
4,061,511	-		DZA65_RS18825	0.85	-0.9
4,061,511	-		DZA65_RS18825	0.85	-2.8
4,061,511	-		DZA65_RS18825	0.85	+0.1
4,061,511	-		DZA65_RS18825	0.85	+1.1
4,061,511	-		DZA65_RS18825	0.85	-1.7
4,061,600	+		DZA65_RS18825	0.88	+0.1
4,061,691	-				-1.0
4,062,134	+				+1.0
4,062,135	-				+0.4
4,062,135	-				-0.2
4,062,228	+				-1.8
4,062,228	+				-1.7
4,062,229	-				+1.8
4,062,229	-				+0.2
4,062,229	-				-0.2
4,062,229	-				+0.9
4,062,229	-				-2.5
4,062,229	-				+0.8
4,062,237	+				-1.5
4,062,237	+				-0.7
4,062,237	+				+0.4
4,062,238	-				-1.7
4,062,260	+				+0.9
4,062,260	+				+2.4
4,062,260	+				+0.5
4,062,261	-				-0.8
4,062,326	+		DZA65_RS18830	0.11	+0.2
4,062,327	-		DZA65_RS18830	0.11	+0.4
4,062,327	-		DZA65_RS18830	0.11	-0.4
4,062,419	+		DZA65_RS18830	0.14	-2.3
4,062,497	+		DZA65_RS18830	0.16	+0.1
4,062,529	+		DZA65_RS18830	0.16	+0.5
4,062,628	-		DZA65_RS18830	0.19	-0.1
4,062,727	+		DZA65_RS18830	0.22	+0.8
4,062,728	-		DZA65_RS18830	0.22	-0.9
4,062,946	+		DZA65_RS18830	0.27	+0.5
4,062,946	+		DZA65_RS18830	0.27	-1.9
4,062,946	+		DZA65_RS18830	0.27	-0.6
4,062,946	+		DZA65_RS18830	0.27	+1.1
4,062,946	+		DZA65_RS18830	0.27	+1.1
4,062,946	+		DZA65_RS18830	0.27	-1.2
4,062,946	+		DZA65_RS18830	0.27	+0.9
4,062,946	+		DZA65_RS18830	0.27	-1.0
4,062,947	-		DZA65_RS18830	0.27	-2.7
4,062,947	-		DZA65_RS18830	0.27	+1.7
4,062,988	+		DZA65_RS18830	0.28	-0.2
4,062,988	+		DZA65_RS18830	0.28	-1.5
4,062,988	+		DZA65_RS18830	0.28	-2.3
4,062,988	+		DZA65_RS18830	0.28	+0.5
4,062,988	+		DZA65_RS18830	0.28	+0.4
4,062,989	-		DZA65_RS18830	0.28	-0.9
4,062,989	-		DZA65_RS18830	0.28	-0.9
4,062,989	-		DZA65_RS18830	0.28	+0.1
4,062,989	-		DZA65_RS18830	0.28	+2.1
4,062,989	-		DZA65_RS18830	0.28	-1.0
4,063,060	+		DZA65_RS18830	0.30	+1.2
4,063,060	+		DZA65_RS18830	0.30	+0.8
4,063,060	+		DZA65_RS18830	0.30	-0.8
4,063,060	+		DZA65_RS18830	0.30	-1.9
4,063,060	+		DZA65_RS18830	0.30	-1.2
4,063,060	+		DZA65_RS18830	0.30	-0.2
4,063,061	-		DZA65_RS18830	0.30	-0.3
4,063,061	-		DZA65_RS18830	0.30	+1.1
4,063,061	-		DZA65_RS18830	0.30	+0.5
4,063,061	-		DZA65_RS18830	0.30	-0.3
4,063,061	-		DZA65_RS18830	0.30	-1.5
4,063,061	-		DZA65_RS18830	0.30	+0.1
4,063,061	-		DZA65_RS18830	0.30	+1.1
4,063,061	-		DZA65_RS18830	0.30	-0.4
4,063,130	+		DZA65_RS18830	0.32	-1.5
4,063,131	-				-2.1
4,063,142	+		DZA65_RS18830	0.32	+1.1
4,063,142	+		DZA65_RS18830	0.32	+0.1
4,063,142	+		DZA65_RS18830	0.32	+0.1
4,063,142	+		DZA65_RS18830	0.32	+0.1
4,063,142	+		DZA65_RS18830	0.32	+1.0
4,063,142	+		DZA65_RS18830	0.32	-0.3
4,063,142	+		DZA65_RS18830	0.32	+1.1
4,063,142	+		DZA65_RS18830	0.32	-0.2
4,063,142	+		DZA65_RS18830	0.32	-0.9
4,063,142	+		DZA65_RS18830	0.32	-0.2
4,063,142	+		DZA65_RS18830	0.32	-2.1
4,063,142	+		DZA65_RS18830	0.32	-0.1
4,063,142	+		DZA65_RS18830	0.32	-0.1
4,063,143	-		DZA65_RS18830	0.32	-1.1
4,063,143	-		DZA65_RS18830	0.32	+0.6
4,063,143	-		DZA65_RS18830	0.32	+0.5
4,063,143	-		DZA65_RS18830	0.32	-0.8
4,063,143	-		DZA65_RS18830	0.32	-0.5
4,063,143	-		DZA65_RS18830	0.32	+0.4
4,063,143	-		DZA65_RS18830	0.32	-0.9
4,063,143	-		DZA65_RS18830	0.32	+0.9
4,063,143	-		DZA65_RS18830	0.32	-2.8
4,063,287	+		DZA65_RS18830	0.36	-0.1
4,063,287	+		DZA65_RS18830	0.36	+0.0
4,063,288	-		DZA65_RS18830	0.36	-0.5
4,063,363	-		DZA65_RS18830	0.38	+2.1
4,063,363	-		DZA65_RS18830	0.38	-1.5
4,063,363	-		DZA65_RS18830	0.38	-1.9
4,063,424	+		DZA65_RS18830	0.40	+0.0
4,063,424	+		DZA65_RS18830	0.40	-0.7
4,063,425	-		DZA65_RS18830	0.40	+0.5
4,063,621	+		DZA65_RS18830	0.45	-1.2
4,063,621	+		DZA65_RS18830	0.45	+0.3
4,063,621	+		DZA65_RS18830	0.45	-0.8
4,063,621	+		DZA65_RS18830	0.45	-0.2
4,063,622	-		DZA65_RS18830	0.45	+1.9
4,063,663	+		DZA65_RS18830	0.46	+0.4
4,063,664	-		DZA65_RS18830	0.46	+0.1
4,063,664	-		DZA65_RS18830	0.46	+1.2
4,063,701	+		DZA65_RS18830	0.47	-0.5
4,063,753	-		DZA65_RS18830	0.48	+3.1
4,063,933	+		DZA65_RS18830	0.53	-1.1
4,063,933	+		DZA65_RS18830	0.53	+0.5
4,063,934	-		DZA65_RS18830	0.53	-0.6
4,063,939	+		DZA65_RS18830	0.53	+2.3
4,063,939	+		DZA65_RS18830	0.53	-0.9
4,063,940	-		DZA65_RS18830	0.53	-0.2
4,063,940	-		DZA65_RS18830	0.53	-0.1
4,063,955	+		DZA65_RS18830	0.54	-0.3
4,063,955	+		DZA65_RS18830	0.54	-0.5
4,063,955	+		DZA65_RS18830	0.54	-1.5
4,063,955	+		DZA65_RS18830	0.54	-0.7
4,064,030	-		DZA65_RS18830	0.56	-0.1
4,064,030	-		DZA65_RS18830	0.56	+1.3
4,064,030	-		DZA65_RS18830	0.56	-0.2
4,064,223	+		DZA65_RS18830	0.61	+0.3
4,064,223	+		DZA65_RS18830	0.61	-1.5
4,064,381	+		DZA65_RS18830	0.65	-2.3
4,064,381	+		DZA65_RS18830	0.65	-0.7
4,064,384	+		DZA65_RS18830	0.65	+0.1
4,064,384	+		DZA65_RS18830	0.65	-0.4
4,064,384	+		DZA65_RS18830	0.65	-0.9
4,064,384	+		DZA65_RS18830	0.65	-2.8
4,064,384	+		DZA65_RS18830	0.65	-1.2
4,064,384	+		DZA65_RS18830	0.65	-0.5
4,064,385	-		DZA65_RS18830	0.65	+0.1
4,064,389	+		DZA65_RS18830	0.65	-0.5
4,064,390	-		DZA65_RS18830	0.65	-0.1
4,064,390	-		DZA65_RS18830	0.65	+2.0
4,064,462	+		DZA65_RS18830	0.67	-1.7
4,064,463	-		DZA65_RS18830	0.67	+1.1
4,064,463	-		DZA65_RS18830	0.67	+0.7
4,064,788	+		DZA65_RS18830	0.75	+2.1
4,064,788	+		DZA65_RS18830	0.75	+1.1
4,064,789	-		DZA65_RS18830	0.75	-0.1
4,064,789	-		DZA65_RS18830	0.75	-0.7
4,064,789	-		DZA65_RS18830	0.75	-2.1
4,064,789	-		DZA65_RS18830	0.75	+0.4
4,064,835	+		DZA65_RS18830	0.76	+0.1
4,064,835	+		DZA65_RS18830	0.76	+0.7
4,064,835	+		DZA65_RS18830	0.76	+0.4
4,064,836	-		DZA65_RS18830	0.77	+1.1
4,064,836	-		DZA65_RS18830	0.77	-1.9
4,064,836	-		DZA65_RS18830	0.77	-0.5
4,064,838	+		DZA65_RS18830	0.77	-1.2
4,064,838	+		DZA65_RS18830	0.77	-2.2
4,064,845	+		DZA65_RS18830	0.77	+0.2
4,064,846	-		DZA65_RS18830	0.77	+2.1
4,064,909	-		DZA65_RS18830	0.78	+0.4
4,064,909	-		DZA65_RS18830	0.78	+0.3
4,065,245	+		DZA65_RS18830	0.87	+1.7
4,065,329	+		DZA65_RS18830	0.89	-1.5
4,065,330	-		DZA65_RS18830	0.89	-1.1
4,065,376	+				+0.2
4,065,376	+				-2.2
4,065,377	-				+0.9
4,065,377	-				+0.1
4,065,377	-				+0.1
4,065,377	-				+1.6
4,065,377	-				+0.4
4,065,377	-				+0.1
4,065,377	-				-0.2
4,065,377	-				+0.6
4,065,682	+				+0.5
4,065,683	-				-2.3
4,065,683	-				+1.1
4,065,683	-				-0.6
4,065,683	-				+0.1
4,065,697	+				-0.9
4,065,698	-				+1.1
4,065,740	+				+1.2
4,065,741	-				+2.8
4,065,759	+				-0.8
4,065,759	+				-1.4
4,065,759	+				-0.3
4,065,759	+				-1.9
4,065,759	+				-0.6
4,065,908	-				-1.3
4,065,925	+				+0.3
4,065,943	+				+0.8
4,065,943	+				-0.7
4,065,943	+				+0.8
4,065,943	+				-1.9
4,065,943	+				-0.3
4,065,944	-				+0.6
4,065,963	+				-2.2
4,065,963	+				-1.2
4,065,964	-				-0.9
4,065,964	-				-0.6
4,065,964	-				-1.9
4,065,964	-				-0.7
4,065,965	+				-0.9
4,065,966	-				+0.4
4,066,021	-				+0.5
4,066,101	+		DZA65_RS18835	0.11	-0.4
4,066,101	+		DZA65_RS18835	0.11	-1.2
4,066,101	+		DZA65_RS18835	0.11	+0.1
4,066,101	+		DZA65_RS18835	0.11	-0.2
4,066,101	+		DZA65_RS18835	0.11	-1.5
4,066,101	+		DZA65_RS18835	0.11	-1.1
4,066,101	+		DZA65_RS18835	0.11	-0.9
4,066,102	-				+0.1
4,066,102	-		DZA65_RS18835	0.11	+0.1
4,066,102	-		DZA65_RS18835	0.11	-0.3
4,066,102	-		DZA65_RS18835	0.11	+0.3
4,066,102	-		DZA65_RS18835	0.11	-1.1
4,066,102	-		DZA65_RS18835	0.11	+1.6
4,066,102	-		DZA65_RS18835	0.11	+0.1
4,066,119	+		DZA65_RS18835	0.12	-0.6
4,066,119	+		DZA65_RS18835	0.12	+0.1
4,066,120	-		DZA65_RS18835	0.12	+1.0
4,066,120	-		DZA65_RS18835	0.12	-0.1
4,066,132	-		DZA65_RS18835	0.12	+1.1
4,066,150	-		DZA65_RS18835	0.13	+1.1
4,066,175	+		DZA65_RS18835	0.14	+0.3
4,066,274	+				+1.7
4,066,275	-		DZA65_RS18835	0.18	+0.1
4,066,432	-		DZA65_RS18835	0.24	-2.2
4,066,434	+		DZA65_RS18835	0.24	+0.6
4,066,434	+		DZA65_RS18835	0.24	-2.3
4,066,679	+		DZA65_RS18835	0.34	+0.5
4,066,679	+		DZA65_RS18835	0.34	+1.9
4,066,679	+		DZA65_RS18835	0.34	-1.5