Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18470

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,977,878	-		DZA65_RS18460	0.58	+2.9
3,977,882	-		DZA65_RS18460	0.58	-0.3
3,977,882	-		DZA65_RS18460	0.58	+0.9
3,977,882	-		DZA65_RS18460	0.58	-2.1
3,977,882	-		DZA65_RS18460	0.58	-1.2
3,977,882	-		DZA65_RS18460	0.58	-0.2
3,977,882	-		DZA65_RS18460	0.58	-0.8
3,977,926	+		DZA65_RS18460	0.62	-2.1
3,978,088	+		DZA65_RS18460	0.76	+0.2
3,978,088	+		DZA65_RS18460	0.76	-0.4
3,978,088	+		DZA65_RS18460	0.76	+0.1
3,978,088	+		DZA65_RS18460	0.76	+1.1
3,978,089	-		DZA65_RS18460	0.76	-0.9
3,978,089	-		DZA65_RS18460	0.76	-0.0
3,978,089	-		DZA65_RS18460	0.76	-2.9
3,978,089	-		DZA65_RS18460	0.76	-2.4
3,978,090	+		DZA65_RS18460	0.76	-1.6
3,978,090	+		DZA65_RS18460	0.76	-0.2
3,978,090	+		DZA65_RS18460	0.76	-0.1
3,978,090	+		DZA65_RS18460	0.76	-0.5
3,978,090	+		DZA65_RS18460	0.76	-0.5
3,978,090	+		DZA65_RS18460	0.76	-0.1
3,978,090	+		DZA65_RS18460	0.76	+0.8
3,978,090	+		DZA65_RS18460	0.76	-0.9
3,978,090	+		DZA65_RS18460	0.76	-2.2
3,978,090	+		DZA65_RS18460	0.76	+0.1
3,978,090	+				-2.2
3,978,090	+		DZA65_RS18460	0.76	+0.8
3,978,090	+		DZA65_RS18460	0.76	-1.5
3,978,090	+		DZA65_RS18460	0.76	+1.7
3,978,091	-		DZA65_RS18460	0.76	+3.4
3,978,091	-		DZA65_RS18460	0.76	+0.1
3,978,091	-		DZA65_RS18460	0.76	+0.3
3,978,091	-		DZA65_RS18460	0.76	-0.9
3,978,091	-		DZA65_RS18460	0.76	+0.5
3,978,091	-		DZA65_RS18460	0.76	-1.4
3,978,091	-		DZA65_RS18460	0.76	-0.1
3,978,091	-		DZA65_RS18460	0.76	-2.8
3,978,091	-		DZA65_RS18460	0.76	+1.1
3,978,091	-		DZA65_RS18460	0.76	+0.6
3,978,091	-		DZA65_RS18460	0.76	+0.8
3,978,091	-		DZA65_RS18460	0.76	+0.3
3,978,091	-		DZA65_RS18460	0.76	-1.5
3,978,103	+		DZA65_RS18460	0.77	-1.3
3,978,103	+		DZA65_RS18460	0.77	-0.9
3,978,103	+		DZA65_RS18460	0.77	-0.9
3,978,103	+		DZA65_RS18460	0.77	+0.1
3,978,103	+		DZA65_RS18460	0.77	-0.5
3,978,104	-		DZA65_RS18460	0.77	-2.4
3,978,104	-		DZA65_RS18460	0.77	+1.4
3,978,104	-		DZA65_RS18460	0.77	+0.4
3,978,209	-		DZA65_RS18460	0.87	+1.5
3,978,268	+				-1.0
3,978,269	-				-2.6
3,978,269	-				-0.1
3,978,269	-				+0.2
3,978,435	+				-1.5
3,978,468	+				-0.9
3,978,468	+				-1.2
3,978,469	-				+3.1
3,978,469	-				+0.5
3,978,469	-				+1.1
3,978,469	-				-0.2
3,978,474	+				-1.7
3,978,475	-				-0.0
3,978,475	-				-1.6
3,978,475	-				+0.6
3,978,535	+				+1.3
3,978,536	-				-0.1
3,978,545	+				-2.4
3,978,545	+				-0.1
3,978,545	+				-1.1
3,978,545	+				+0.6
3,978,545	+				+0.9
3,978,545	+				-0.9
3,978,546	-				+0.3
3,978,546	-				-0.5
3,978,546	-				+0.1
3,978,546	-				-0.5
3,978,546	-				+0.6
3,978,548	+				-0.2
3,978,549	-				+0.5
3,978,719	+				+0.3
3,978,750	+				-0.3
3,978,751	-				+0.4
3,978,833	+		DZA65_RS18470	0.25	+0.2
3,978,833	+		DZA65_RS18470	0.25	+1.7
3,978,834	-		DZA65_RS18470	0.25	+0.4
3,978,834	-		DZA65_RS18470	0.25	-2.8
3,978,834	-		DZA65_RS18470	0.25	+0.1
3,978,876	+		DZA65_RS18470	0.35	-0.9
3,978,877	-		DZA65_RS18470	0.35	-0.5
3,978,877	-		DZA65_RS18470	0.35	+1.2
3,978,877	-		DZA65_RS18470	0.35	+1.1
3,978,886	+		DZA65_RS18470	0.37	+1.2
3,978,886	+		DZA65_RS18470	0.37	-1.2
3,978,886	+		DZA65_RS18470	0.37	-1.2
3,978,887	-		DZA65_RS18470	0.37	+1.7
3,978,887	-		DZA65_RS18470	0.37	+0.1
3,978,887	-		DZA65_RS18470	0.37	+1.5
3,978,887	-		DZA65_RS18470	0.37	-1.4
3,978,887	-		DZA65_RS18470	0.37	-0.9
3,978,887	-		DZA65_RS18470	0.37	+1.1
3,979,098	+		DZA65_RS18470	0.83	+0.5
3,979,118	+		DZA65_RS18470	0.88	-1.7
3,979,118	+		DZA65_RS18470	0.88	-0.3
3,979,118	+		DZA65_RS18470	0.88	+0.7
3,979,118	+		DZA65_RS18470	0.88	-1.5
3,979,119	-		DZA65_RS18470	0.88	-2.4
3,979,119	-		DZA65_RS18470	0.88	-0.3
3,979,127	+		DZA65_RS18470	0.90	+0.2
3,979,128	-				-1.3
3,979,186	+				-0.4
3,979,186	+				-0.4
3,979,443	+		DZA65_RS18475	0.21	+0.7
3,979,443	+		DZA65_RS18475	0.21	-0.1
3,979,444	-		DZA65_RS18475	0.21	-1.5
3,979,444	-		DZA65_RS18475	0.21	+1.1
3,979,508	-		DZA65_RS18475	0.26	+0.7
3,979,508	-		DZA65_RS18475	0.26	-0.8
3,979,514	+		DZA65_RS18475	0.26	-0.5
3,979,611	-		DZA65_RS18475	0.34	+0.7
3,979,647	+		DZA65_RS18475	0.37	-1.7
3,979,648	-		DZA65_RS18475	0.37	-0.1
3,979,912	+		DZA65_RS18475	0.58	+1.6
3,979,913	-		DZA65_RS18475	0.58	-0.3
3,979,913	-		DZA65_RS18475	0.58	+1.1
3,979,942	+		DZA65_RS18475	0.61	-1.7
3,979,942	+		DZA65_RS18475	0.61	-1.2
3,979,942	+		DZA65_RS18475	0.61	+0.3
3,979,942	+		DZA65_RS18475	0.61	+1.1
3,979,942	+		DZA65_RS18475	0.61	-1.8
3,979,943	-		DZA65_RS18475	0.61	-0.7
3,979,943	-		DZA65_RS18475	0.61	-0.6
3,979,943	-		DZA65_RS18475	0.61	-0.3
3,979,946	+		DZA65_RS18475	0.61	-0.2
3,979,946	+		DZA65_RS18475	0.61	-0.8
3,979,946	+		DZA65_RS18475	0.61	-0.2
3,979,946	+		DZA65_RS18475	0.61	-1.2
3,979,947	-		DZA65_RS18475	0.61	-0.7
3,979,947	-		DZA65_RS18475	0.61	+0.5
3,979,947	-		DZA65_RS18475	0.61	+0.5
3,979,947	-		DZA65_RS18475	0.61	+0.4
3,979,947	-		DZA65_RS18475	0.61	-0.3
3,979,947	-		DZA65_RS18475	0.61	-0.8
3,979,947	-		DZA65_RS18475	0.61	+1.4
3,980,071	+		DZA65_RS18475	0.71	+0.1
3,980,086	+		DZA65_RS18475	0.72	+0.5
3,980,086	+		DZA65_RS18475	0.72	-0.4
3,980,087	-		DZA65_RS18475	0.72	+1.4
3,980,087	-		DZA65_RS18475	0.72	+0.0
3,980,116	+		DZA65_RS18475	0.75	-2.7
3,980,117	-		DZA65_RS18475	0.75	-1.1
3,980,169	+		DZA65_RS18475	0.79	+0.5