Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15920

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,454,615	+		DZA65_RS15910	0.65	-2.5
3,454,615	+		DZA65_RS15910	0.65	+0.3
3,454,616	-		DZA65_RS15910	0.66	-1.3
3,454,681	+		DZA65_RS15910	0.71	-0.6
3,454,708	+		DZA65_RS15910	0.73	+0.9
3,454,709	-		DZA65_RS15910	0.74	+0.2
3,454,709	-		DZA65_RS15910	0.74	-0.7
3,454,709	-		DZA65_RS15910	0.74	-0.9
3,454,709	-		DZA65_RS15910	0.74	-0.7
3,454,735	+		DZA65_RS15910	0.76	+0.1
3,454,735	+		DZA65_RS15910	0.76	-1.1
3,454,750	+		DZA65_RS15910	0.77	-1.1
3,454,750	+		DZA65_RS15910	0.77	+1.6
3,454,750	+		DZA65_RS15910	0.77	+2.1
3,454,751	-		DZA65_RS15910	0.77	-0.7
3,454,751	-		DZA65_RS15910	0.77	-2.1
3,454,751	-		DZA65_RS15910	0.77	-0.7
3,454,751	-		DZA65_RS15910	0.77	+0.3
3,454,751	-		DZA65_RS15910	0.77	-1.4
3,454,769	+		DZA65_RS15910	0.79	+0.9
3,454,769	+		DZA65_RS15910	0.79	-0.1
3,454,769	+		DZA65_RS15910	0.79	-0.8
3,454,770	-		DZA65_RS15910	0.79	+0.7
3,454,770	-		DZA65_RS15910	0.79	-1.6
3,454,770	-		DZA65_RS15910	0.79	+0.7
3,454,770	-		DZA65_RS15910	0.79	+1.9
3,454,770	-		DZA65_RS15910	0.79	-1.1
3,454,770	-		DZA65_RS15910	0.79	-0.4
3,454,770	-		DZA65_RS15910	0.79	+0.0
3,454,873	+		DZA65_RS15910	0.88	+0.3
3,454,935	+				-0.8
3,454,935	+				+0.3
3,454,935	+				-0.1
3,454,935	+				-0.7
3,454,936	-				-0.4
3,454,936	-				+0.2
3,454,936	-				-2.1
3,454,986	+				-0.3
3,454,986	+				-0.2
3,454,986	+				-0.2
3,454,986	+				-0.2
3,454,986	+				+0.9
3,454,987	-				-1.4
3,454,987	-				+0.9
3,455,014	+				-0.1
3,455,014	+				-1.4
3,455,015	-				-1.5
3,455,046	+				-0.5
3,455,046	+				+0.9
3,455,046	+				+0.2
3,455,046	+				-2.4
3,455,047	-				-0.2
3,455,047	-				-1.7
3,455,047	-				-0.7
3,455,066	+		DZA65_RS15915	0.16	+0.9
3,455,066	+		DZA65_RS15915	0.16	+2.1
3,455,066	+		DZA65_RS15915	0.16	-0.1
3,455,066	+		DZA65_RS15915	0.16	-1.9
3,455,066	+		DZA65_RS15915	0.16	-1.2
3,455,066	+		DZA65_RS15915	0.16	-0.5
3,455,066	+		DZA65_RS15915	0.16	+0.6
3,455,067	-		DZA65_RS15915	0.16	+0.5
3,455,067	-		DZA65_RS15915	0.16	+0.9
3,455,067	-		DZA65_RS15915	0.16	-2.1
3,455,067	-		DZA65_RS15915	0.16	+1.6
3,455,067	-		DZA65_RS15915	0.16	-0.1
3,455,067	-		DZA65_RS15915	0.16	-0.3
3,455,067	-		DZA65_RS15915	0.16	+0.9
3,455,070	+		DZA65_RS15915	0.17	-1.3
3,455,070	+		DZA65_RS15915	0.17	+0.1
3,455,071	-		DZA65_RS15915	0.18	+0.5
3,455,174	-		DZA65_RS15915	0.52	-1.2
3,455,174	-		DZA65_RS15915	0.52	+0.9
3,455,186	-		DZA65_RS15915	0.56	+0.9
3,455,186	-		DZA65_RS15915	0.56	-0.4
3,455,221	+		DZA65_RS15915	0.67	+0.4
3,455,221	+		DZA65_RS15915	0.67	-0.0
3,455,221	+		DZA65_RS15915	0.67	+0.8
3,455,221	+		DZA65_RS15915	0.67	+0.3
3,455,221	+		DZA65_RS15915	0.67	-0.4
3,455,221	+		DZA65_RS15915	0.67	+0.3
3,455,221	+		DZA65_RS15915	0.67	-0.8
3,455,221	+		DZA65_RS15915	0.67	+0.9
3,455,222	-		DZA65_RS15915	0.67	+0.4
3,455,239	+		DZA65_RS15915	0.73	+0.5
3,455,239	+		DZA65_RS15915	0.73	-2.2
3,455,240	-				-1.7
3,455,244	+		DZA65_RS15915	0.75	-0.1
3,455,244	+		DZA65_RS15915	0.75	-0.7
3,455,244	+		DZA65_RS15915	0.75	-0.8
3,455,252	+		DZA65_RS15915	0.77	+0.3
3,455,252	+		DZA65_RS15915	0.77	+0.0
3,455,252	+		DZA65_RS15915	0.77	+0.0
3,455,252	+		DZA65_RS15915	0.77	-0.2
3,455,253	-		DZA65_RS15915	0.78	+0.3
3,455,253	-		DZA65_RS15915	0.78	-1.9
3,455,253	-		DZA65_RS15915	0.78	-0.3
3,455,253	-		DZA65_RS15915	0.78	+0.9
3,455,254	+		DZA65_RS15915	0.78	+1.4
3,455,254	+		DZA65_RS15915	0.78	+0.8
3,455,254	+		DZA65_RS15915	0.78	-0.7
3,455,254	+		DZA65_RS15915	0.78	+0.9
3,455,254	+		DZA65_RS15915	0.78	-0.4
3,455,254	+		DZA65_RS15915	0.78	+0.4
3,455,254	+		DZA65_RS15915	0.78	+0.2
3,455,255	-		DZA65_RS15915	0.78	+1.5
3,455,255	-		DZA65_RS15915	0.78	-0.3
3,455,255	-		DZA65_RS15915	0.78	-2.9
3,455,255	-		DZA65_RS15915	0.78	+1.7
3,455,255	-		DZA65_RS15915	0.78	-1.1
3,455,261	-		DZA65_RS15915	0.80	+0.3
3,455,335	+				+1.1
3,455,335	+				+1.1
3,455,335	+				+0.9
3,455,336	-				-2.4
3,455,336	-				-0.4
3,455,359	+				-1.1
3,455,360	-				+2.5
3,455,360	-				+0.1
3,455,375	-				+0.9
3,455,454	+				+0.3
3,455,454	+				-3.5
3,455,454	+				-2.1
3,455,454	+				-2.4
3,455,455	-				-0.7
3,455,455	-				-0.7
3,455,455	-				+0.3
3,455,503	+				+1.1
3,455,504	-				+0.2
3,455,504	-				-1.1
3,455,528	+				-0.1
3,455,553	+				-1.1
3,455,553	+				+0.5
3,455,553	+				-1.4
3,455,554	-				+0.2
3,455,554	-				-0.1
3,455,554	-				+0.9
3,455,554	-				+0.5
3,455,554	-				-0.1
3,455,620	-				+0.9
3,455,623	+				+1.5
3,455,641	+				-0.1
3,455,642	-				-1.8
3,455,642	-				+0.4
3,455,642	-				+0.9
3,455,645	+				+0.1
3,455,645	+				-1.7
3,455,645	+				+1.2
3,455,645	+				-0.7
3,455,645	+				-0.7
3,455,646	-				-1.1
3,455,646	-				-0.8
3,455,646	-				+0.9
3,455,646	-				+1.4
3,455,646	-				-1.7
3,455,649	+		DZA65_RS15920	0.10	+0.1
3,455,649	+		DZA65_RS15920	0.10	+0.3
3,455,650	-		DZA65_RS15920	0.10	-1.1
3,455,650	-		DZA65_RS15920	0.10	-1.3
3,455,650	-		DZA65_RS15920	0.10	+0.6
3,455,650	-		DZA65_RS15920	0.10	-0.3
3,455,737	+		DZA65_RS15920	0.22	-0.8
3,455,737	+				-2.2
3,455,737	+		DZA65_RS15920	0.22	+0.7
3,455,737	+		DZA65_RS15920	0.22	+0.8
3,455,737	+		DZA65_RS15920	0.22	-2.4
3,455,738	-		DZA65_RS15920	0.22	+0.7
3,455,766	-		DZA65_RS15920	0.26	+0.2
3,455,818	+		DZA65_RS15920	0.32	-0.8
3,455,818	+				-1.1
3,455,818	+		DZA65_RS15920	0.32	-0.7
3,455,818	+		DZA65_RS15920	0.32	+0.9
3,455,818	+		DZA65_RS15920	0.32	-1.4
3,455,818	+		DZA65_RS15920	0.32	+2.2
3,455,819	-		DZA65_RS15920	0.33	+0.4
3,455,819	-		DZA65_RS15920	0.33	-0.4
3,455,819	-		DZA65_RS15920	0.33	+0.3
3,455,819	-		DZA65_RS15920	0.33	+2.2
3,455,819	-		DZA65_RS15920	0.33	+1.8
3,455,821	+		DZA65_RS15920	0.33	-0.7
3,455,821	+		DZA65_RS15920	0.33	-0.7
3,455,821	+		DZA65_RS15920	0.33	+0.5
3,455,821	+		DZA65_RS15920	0.33	+1.9
3,455,822	-		DZA65_RS15920	0.33	+1.1
3,455,822	-		DZA65_RS15920	0.33	-0.1
3,455,822	-		DZA65_RS15920	0.33	-0.2
3,455,835	-		DZA65_RS15920	0.35	-0.2
3,455,835	-		DZA65_RS15920	0.35	+0.3
3,455,855	+		DZA65_RS15920	0.37	-1.9
3,455,855	+		DZA65_RS15920	0.37	-1.1
3,455,855	+		DZA65_RS15920	0.37	-0.9
3,455,855	+		DZA65_RS15920	0.37	-0.8
3,455,856	-		DZA65_RS15920	0.37	-0.4
3,455,856	-		DZA65_RS15920	0.37	-0.4
3,455,856	-		DZA65_RS15920	0.37	+0.5
3,455,856	-		DZA65_RS15920	0.37	+0.3
3,455,856	-		DZA65_RS15920	0.37	-0.3
3,455,856	-		DZA65_RS15920	0.37	-0.5
3,455,856	-		DZA65_RS15920	0.37	-1.9
3,455,856	-		DZA65_RS15920	0.37	+0.2
3,455,856	-		DZA65_RS15920	0.37	+0.0
3,455,856	-		DZA65_RS15920	0.37	+1.3
3,455,856	-		DZA65_RS15920	0.37	+0.9
3,455,877	+		DZA65_RS15920	0.40	-0.0
3,455,877	+		DZA65_RS15920	0.40	-1.1
3,455,877	+		DZA65_RS15920	0.40	-0.7
3,455,877	+		DZA65_RS15920	0.40	-2.9
3,455,877	+		DZA65_RS15920	0.40	+0.3
3,455,877	+		DZA65_RS15920	0.40	-2.4
3,455,877	+		DZA65_RS15920	0.40	+1.8
3,455,877	+				-0.4
3,455,877	+		DZA65_RS15920	0.40	-0.3
3,455,877	+		DZA65_RS15920	0.40	-2.1
3,455,878	-		DZA65_RS15920	0.40	-0.7
3,455,878	-		DZA65_RS15920	0.40	-0.7
3,455,878	-		DZA65_RS15920	0.40	-1.0
3,455,878	-		DZA65_RS15920	0.40	-1.1
3,455,878	-		DZA65_RS15920	0.40	+1.1
3,455,878	-		DZA65_RS15920	0.40	-0.7
3,455,878	-		DZA65_RS15920	0.40	+1.9
3,455,878	-		DZA65_RS15920	0.40	+1.3
3,455,889	-		DZA65_RS15920	0.42	-1.2
3,455,964	-		DZA65_RS15920	0.52	-2.2
3,455,973	+		DZA65_RS15920	0.53	-1.4
3,455,973	+		DZA65_RS15920	0.53	-1.5
3,455,973	+		DZA65_RS15920	0.53	-0.5
3,455,973	+		DZA65_RS15920	0.53	-1.1
3,455,973	+		DZA65_RS15920	0.53	-0.1
3,455,973	+		DZA65_RS15920	0.53	-1.2
3,455,973	+		DZA65_RS15920	0.53	-0.1
3,455,973	+		DZA65_RS15920	0.53	-1.4
3,455,973	+		DZA65_RS15920	0.53	+0.9
3,455,973	+		DZA65_RS15920	0.53	-0.7
3,455,973	+		DZA65_RS15920	0.53	+0.5
3,455,973	+		DZA65_RS15920	0.53	+0.1
3,455,973	+		DZA65_RS15920	0.53	-0.1
3,455,974	-		DZA65_RS15920	0.53	-1.1
3,455,974	-		DZA65_RS15920	0.53	+1.6
3,455,974	-		DZA65_RS15920	0.53	-0.8
3,455,974	-		DZA65_RS15920	0.53	-0.4
3,455,974	-		DZA65_RS15920	0.53	-0.4
3,455,974	-		DZA65_RS15920	0.53	-0.4
3,455,974	-		DZA65_RS15920	0.53	-0.7
3,455,974	-		DZA65_RS15920	0.53	-1.4
3,455,974	-		DZA65_RS15920	0.53	+0.3
3,455,974	-		DZA65_RS15920	0.53	-0.9
3,455,974	-		DZA65_RS15920	0.53	-0.5
3,455,980	+		DZA65_RS15920	0.54	-0.7
3,456,047	+		DZA65_RS15920	0.63	-1.0
3,456,176	-		DZA65_RS15920	0.80	+0.6
3,456,184	-		DZA65_RS15920	0.81	-0.1
3,456,193	+		DZA65_RS15920	0.82	+1.1
3,456,199	+		DZA65_RS15920	0.83	-0.2
3,456,199	+		DZA65_RS15920	0.83	-0.2
3,456,232	+		DZA65_RS15920	0.87	-1.4
3,456,232	+		DZA65_RS15920	0.87	-1.1
3,456,232	+		DZA65_RS15920	0.87	+0.9
3,456,232	+		DZA65_RS15920	0.87	-0.1
3,456,238	+		DZA65_RS15920	0.88	-0.1
3,456,239	-		DZA65_RS15920	0.88	-1.9
3,456,239	-		DZA65_RS15920	0.88	+0.7
3,456,260	+				-0.7
3,456,260	+				+0.1
3,456,260	+				-1.1
3,456,260	+				+1.8
3,456,261	-				+0.9
3,456,261	-				-0.3
3,456,261	-				-0.1
3,456,278	+				+0.1
3,456,278	+				+0.9
3,456,278	+				+0.3
3,456,279	-				+0.8
3,456,310	+				+0.1
3,456,311	-				-0.1
3,456,311	-				+0.2
3,456,328	+				-0.4
3,456,329	-				+1.9
3,456,329	-				-0.3
3,456,347	-				-0.8
3,456,356	-				-1.2
3,456,429	+				+0.6
3,456,429	+				-0.7
3,456,429	+				-1.1
3,456,429	+				-1.4
3,456,439	+				+1.7
3,456,439	+				-0.5
3,456,440	-				-1.4
3,456,440	-				-2.1
3,456,440	-				-2.1
3,456,507	-		DZA65_RS15925	0.10	-1.2
3,456,507	-		DZA65_RS15925	0.10	-0.3
3,456,507	-		DZA65_RS15925	0.10	-1.1
3,456,511	+		DZA65_RS15925	0.11	-0.7
3,456,517	+		DZA65_RS15925	0.12	+1.5
3,456,518	-		DZA65_RS15925	0.12	-0.3
3,456,518	-		DZA65_RS15925	0.12	+0.5
3,456,518	-		DZA65_RS15925	0.12	-0.7
3,456,518	-		DZA65_RS15925	0.12	+0.3
3,456,640	+		DZA65_RS15925	0.31	-1.2
3,456,640	+		DZA65_RS15925	0.31	-0.3
3,456,640	+		DZA65_RS15925	0.31	-2.2
3,456,640	+		DZA65_RS15925	0.31	+0.5
3,456,640	+		DZA65_RS15925	0.31	+0.1
3,456,640	+		DZA65_RS15925	0.31	-3.2
3,456,640	+		DZA65_RS15925	0.31	-0.9
3,456,640	+		DZA65_RS15925	0.31	-1.2
3,456,641	-		DZA65_RS15925	0.31	+0.6
3,456,641	-		DZA65_RS15925	0.31	+1.5
3,456,641	-		DZA65_RS15925	0.31	+0.9
3,456,641	-		DZA65_RS15925	0.31	+0.1
3,456,641	-		DZA65_RS15925	0.31	+0.2
3,456,641	-		DZA65_RS15925	0.31	+0.6
3,456,641	-		DZA65_RS15925	0.31	-0.7
3,456,641	-		DZA65_RS15925	0.31	+1.2
3,456,641	-		DZA65_RS15925	0.31	-0.2
3,456,641	-		DZA65_RS15925	0.31	-1.0
3,456,641	-		DZA65_RS15925	0.31	+0.9
3,456,641	-		DZA65_RS15925	0.31	-0.2
3,456,641	-		DZA65_RS15925	0.31	-0.5
3,456,641	-		DZA65_RS15925	0.31	+2.3
3,456,641	-		DZA65_RS15925	0.31	+1.1
3,456,642	+		DZA65_RS15925	0.32	-0.1
3,456,642	+		DZA65_RS15925	0.32	+0.1
3,456,642	+		DZA65_RS15925	0.32	-0.3
3,456,642	+		DZA65_RS15925	0.32	+0.9
3,456,642	+		DZA65_RS15925	0.32	+0.2
3,456,642	+		DZA65_RS15925	0.32	-0.5
3,456,643	-		DZA65_RS15925	0.32	+0.9
3,456,643	-		DZA65_RS15925	0.32	-0.1
3,456,643	-		DZA65_RS15925	0.32	-0.1
3,456,648	+		DZA65_RS15925	0.33	+0.5
3,456,648	+		DZA65_RS15925	0.33	-0.1
3,456,648	+		DZA65_RS15925	0.33	-1.4
3,456,648	+		DZA65_RS15925	0.33	+0.7
3,456,649	-		DZA65_RS15925	0.33	-1.1
3,456,669	-		DZA65_RS15925	0.36	+0.3
3,456,669	-		DZA65_RS15925	0.36	-0.7
3,456,669	-		DZA65_RS15925	0.36	-0.5
3,456,672	+		DZA65_RS15925	0.36	+0.5
3,456,672	+		DZA65_RS15925	0.36	-0.7
3,456,672	+		DZA65_RS15925	0.36	-1.9
3,456,672	+		DZA65_RS15925	0.36	+0.5
3,456,672	+				+0.3
3,456,673	-		DZA65_RS15925	0.37	-0.7
3,456,673	-				-2.2
3,456,673	-		DZA65_RS15925	0.37	+0.7
3,456,673	-		DZA65_RS15925	0.37	-0.3
3,456,673	-		DZA65_RS15925	0.37	-1.7
3,456,727	+		DZA65_RS15925	0.45	-0.3
3,456,744	+		DZA65_RS15925	0.48	+0.3
3,456,744	+		DZA65_RS15925	0.48	-0.7
3,456,745	-		DZA65_RS15925	0.48	-1.1
3,456,749	+		DZA65_RS15925	0.49	-1.2
3,456,750	-		DZA65_RS15925	0.49	-0.1
3,456,750	-		DZA65_RS15925	0.49	+0.9
3,456,822	+		DZA65_RS15925	0.60	+0.7
3,456,822	+		DZA65_RS15925	0.60	-0.4
3,456,823	-		DZA65_RS15925	0.60	-0.3
3,456,823	-		DZA65_RS15925	0.60	-0.7
3,456,932	-		DZA65_RS15925	0.78	-0.9
3,456,932	-		DZA65_RS15925	0.78	-0.3
3,456,947	+		DZA65_RS15925	0.80	+1.7
3,456,982	+		DZA65_RS15925	0.86	-0.8
3,456,982	+		DZA65_RS15925	0.86	-1.4
3,456,982	+		DZA65_RS15925	0.86	-1.1
3,456,982	+		DZA65_RS15925	0.86	-0.1
3,456,982	+				+0.1
3,456,982	+		DZA65_RS15925	0.86	-0.8
3,456,982	+		DZA65_RS15925	0.86	-1.1
3,456,982	+		DZA65_RS15925	0.86	-0.3
3,456,982	+		DZA65_RS15925	0.86	+0.2
3,456,982	+		DZA65_RS15925	0.86	-0.5
3,456,983	-		DZA65_RS15925	0.86	-1.3
3,456,983	-		DZA65_RS15925	0.86	-0.1
3,456,983	-		DZA65_RS15925	0.86	+1.7
3,456,983	-		DZA65_RS15925	0.86	-0.1
3,456,983	-		DZA65_RS15925	0.86	-2.7
3,456,983	-		DZA65_RS15925	0.86	+0.9
3,456,986	+		DZA65_RS15925	0.86	+0.6
3,456,986	+		DZA65_RS15925	0.86	+0.1
3,456,986	+		DZA65_RS15925	0.86	+0.1
3,456,986	+		DZA65_RS15925	0.86	-0.6
3,456,986	+		DZA65_RS15925	0.86	+0.2
3,456,986	+		DZA65_RS15925	0.86	-1.4
3,456,986	+				+0.3
3,456,986	+		DZA65_RS15925	0.86	-0.4
3,456,986	+		DZA65_RS15925	0.86	-1.3
3,456,986	+		DZA65_RS15925	0.86	+0.4
3,456,986	+		DZA65_RS15925	0.86	-1.6
3,456,986	+		DZA65_RS15925	0.86	-0.7
3,456,986	+		DZA65_RS15925	0.86	+0.3
3,456,986	+		DZA65_RS15925	0.86	-2.1
3,456,986	+		DZA65_RS15925	0.86	+0.1
3,456,986	+		DZA65_RS15925	0.86	+0.4
3,456,987	-		DZA65_RS15925	0.87	-0.7
3,456,987	-		DZA65_RS15925	0.87	-0.9
3,456,987	-		DZA65_RS15925	0.87	-2.1
3,456,987	-		DZA65_RS15925	0.87	-1.1
3,456,987	-		DZA65_RS15925	0.87	-0.4
3,456,987	-		DZA65_RS15925	0.87	+0.2
3,456,987	-		DZA65_RS15925	0.87	+0.4
3,456,987	-		DZA65_RS15925	0.87	-0.1
3,456,987	-		DZA65_RS15925	0.87	-0.7
3,456,987	-		DZA65_RS15925	0.87	+0.3
3,456,987	-		DZA65_RS15925	0.87	-1.2
3,457,021	+				+2.2
3,457,022	-				+0.1
3,457,022	-				+0.9
3,457,078	+				+0.2
3,457,090	+				-0.7
3,457,090	+				+0.6
3,457,093	+				-1.7
3,457,158	-				-0.4
3,457,163	+				+1.1
3,457,163	+				+0.2
3,457,163	+				-2.5
3,457,163	+				+0.4
3,457,164	-				+0.5
3,457,164	-				-2.2
3,457,164	-				-0.0
3,457,164	-				+0.1
3,457,164	-				+0.9
3,457,164	-				-0.3
3,457,170	+				+0.7
3,457,170	+				+1.9
3,457,171	-				-0.2
3,457,189	+				+2.5
3,457,189	+				+0.7
3,457,190	-				-2.7
3,457,190	-				-0.5
3,457,218	+				-1.5
3,457,219	-				+0.5
3,457,228	-				-0.1
3,457,316	+		DZA65_RS15930	0.20	-1.3
3,457,317	-		DZA65_RS15930	0.20	+0.7
3,457,317	-		DZA65_RS15930	0.20	-0.7