Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14210

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
3,066,586	+				-0.9
3,066,586	+				-0.7
3,066,587	-				-0.4
3,066,620	+				-0.5
3,066,621	-				+1.1
3,066,621	-				+0.1
3,066,622	+				-2.3
3,066,622	+				+0.3
3,066,645	-				-0.4
3,066,645	-				+0.8
3,066,645	-				-0.1
3,066,646	+				+0.6
3,066,646	+				+0.1
3,066,646	+				+1.1
3,066,646	+				+0.3
3,066,646	+				+1.4
3,066,646	+				+0.5
3,066,647	-				-0.3
3,066,647	-				-0.2
3,066,647	-				-0.3
3,066,669	+				-0.0
3,066,670	-				-1.2
3,066,670	-				+1.1
3,066,685	+				-1.5
3,066,685	+				-0.7
3,066,746	+				+1.7
3,066,746	+				-0.5
3,066,746	+				-1.5
3,066,746	+				-2.9
3,066,747	-				-0.2
3,066,747	-				-2.2
3,066,747	-				-1.2
3,066,748	+				-0.5
3,066,748	+				-0.2
3,066,748	+				+0.5
3,066,749	-				-1.7
3,066,749	-				+3.3
3,066,749	-				-1.5
3,066,749	-				-0.4
3,066,749	-				+0.8
3,066,749	-				+1.4
3,066,768	+				+1.0
3,066,768	+				+0.1
3,066,768	+				+0.3
3,066,768	+				-0.5
3,066,768	+				-1.3
3,066,768	+				-1.6
3,066,769	-				-0.0
3,066,769	-				+2.4
3,066,769	-				-0.5
3,066,770	+				-1.3
3,066,770	+				-1.3
3,066,820	+				-0.7
3,066,972	-				-1.5
3,066,972	-				+1.5
3,066,972	-				-0.7
3,066,972	-				-1.2
3,067,038	+				-2.3
3,067,038	+				+1.8
3,067,038	+				-0.0
3,067,039	-				+0.1
3,067,053	-				-2.2
3,067,079	+				-0.7
3,067,230	+				+0.6
3,067,230	+				-2.5
3,067,231	-				+1.6
3,067,234	+		DZA65_RS14205	0.11	-0.3
3,067,235	-		DZA65_RS14205	0.11	+1.4
3,067,300	+		DZA65_RS14205	0.29	+0.4
3,067,300	+		DZA65_RS14205	0.29	+0.3
3,067,301	-		DZA65_RS14205	0.29	-1.7
3,067,301	-		DZA65_RS14205	0.29	+1.1
3,067,419	+		DZA65_RS14205	0.62	-0.5
3,067,422	-		DZA65_RS14205	0.63	-0.7
3,067,422	-		DZA65_RS14205	0.63	+0.3
3,067,422	-		DZA65_RS14205	0.63	-0.0
3,067,422	-		DZA65_RS14205	0.63	-0.2
3,067,458	+				-1.5
3,067,459	-		DZA65_RS14205	0.73	+2.0
3,067,493	+		DZA65_RS14205	0.82	+1.6
3,067,493	+		DZA65_RS14205	0.82	+0.0
3,067,494	-		DZA65_RS14205	0.82	+0.6
3,067,540	+				+0.3
3,067,547	+				+0.3
3,067,547	+				-1.2
3,067,562	+				-0.5
3,067,563	-				-2.0
3,067,598	-				-0.2
3,067,644	+				+1.3
3,067,701	-		DZA65_RS14210	0.12	+1.8
3,067,701	-		DZA65_RS14210	0.12	+0.6
3,067,708	+		DZA65_RS14210	0.13	-0.3
3,067,709	-		DZA65_RS14210	0.13	-1.0
3,067,803	-		DZA65_RS14210	0.21	-0.2
3,067,803	-		DZA65_RS14210	0.21	+0.8
3,067,805	+		DZA65_RS14210	0.21	+0.5
3,067,806	-		DZA65_RS14210	0.21	-0.5
3,067,806	-		DZA65_RS14210	0.21	-0.7
3,067,829	-		DZA65_RS14210	0.23	-2.2
3,067,866	+		DZA65_RS14210	0.26	+1.4
3,067,910	+		DZA65_RS14210	0.30	+0.6
3,067,985	+		DZA65_RS14210	0.37	+0.3
3,067,985	+		DZA65_RS14210	0.37	+0.1
3,067,986	-		DZA65_RS14210	0.37	+1.0
3,068,012	-		DZA65_RS14210	0.39	+0.2
3,068,012	-		DZA65_RS14210	0.39	-1.4
3,068,051	+		DZA65_RS14210	0.42	-0.2
3,068,052	-		DZA65_RS14210	0.42	+0.4
3,068,052	-		DZA65_RS14210	0.42	-0.7
3,068,103	+		DZA65_RS14210	0.47	-0.7
3,068,103	+				+0.5
3,068,104	-		DZA65_RS14210	0.47	+0.6
3,068,185	+		DZA65_RS14210	0.54	+0.8
3,068,210	+		DZA65_RS14210	0.56	-1.7
3,068,214	-		DZA65_RS14210	0.56	-1.0
3,068,218	+		DZA65_RS14210	0.57	-0.7
3,068,218	+		DZA65_RS14210	0.57	+1.3
3,068,218	+		DZA65_RS14210	0.57	+0.8
3,068,219	-		DZA65_RS14210	0.57	+0.4
3,068,219	-		DZA65_RS14210	0.57	-1.7
3,068,222	-		DZA65_RS14210	0.57	+0.8
3,068,222	-		DZA65_RS14210	0.57	-2.3
3,068,333	+		DZA65_RS14210	0.66	-2.6
3,068,333	+		DZA65_RS14210	0.66	-0.2
3,068,333	+		DZA65_RS14210	0.66	-1.2
3,068,333	+		DZA65_RS14210	0.66	+0.2
3,068,333	+		DZA65_RS14210	0.66	+1.0
3,068,334	-		DZA65_RS14210	0.67	-1.5
3,068,335	+		DZA65_RS14210	0.67	-1.0
3,068,336	-		DZA65_RS14210	0.67	-1.5
3,068,350	+		DZA65_RS14210	0.68	-1.4
3,068,728	-				-1.2
3,068,796	-		DZA65_RS14215	0.17	-0.7
3,068,796	-		DZA65_RS14215	0.17	-0.4
3,068,890	-		DZA65_RS14215	0.52	-0.9
3,068,938	+		DZA65_RS14215	0.70	-0.1
3,068,938	+		DZA65_RS14215	0.70	-1.7
3,068,938	+		DZA65_RS14215	0.70	-0.2
3,068,939	-		DZA65_RS14215	0.70	+1.8
3,068,987	+		DZA65_RS14215	0.88	+0.0
3,068,988	-		DZA65_RS14215	0.89	-2.3
3,068,988	-		DZA65_RS14215	0.89	-1.2
3,068,988	-		DZA65_RS14215	0.89	-0.2
3,069,108	+				+0.0
3,069,108	+				+1.0
3,069,108	+				+2.2
3,069,109	-				-1.0
3,069,109	-				-2.0
3,069,121	+				+0.0
3,069,121	+				+0.0
3,069,121	+				+1.4
3,069,122	-				+2.3
3,069,122	-				+0.3
3,069,122	-				-1.7
3,069,181	+				-2.0
3,069,181	+				-0.7
3,069,182	-				+0.3
3,069,182	-				-1.5
3,069,197	-				-0.2
3,069,341	+				+1.2
3,069,342	-				-1.5
3,069,450	+				-1.9
3,069,450	+				+0.5
3,069,451	-				+0.6
3,069,451	-				-1.5
3,069,451	-				+0.1
3,069,451	-				+0.3
3,069,507	+				-1.2
3,069,507	+				+0.1
3,069,507	+				-1.5
3,069,507	+				-1.5
3,069,507	+				-1.4
3,069,508	-				+2.0
3,069,508	-				+1.8
3,069,508	-				+0.5
3,069,508	-				-1.5
3,069,508	-				-2.2
3,069,508	-				+1.0
3,069,508	-				+1.0
3,069,508	-				-0.3
3,069,509	+				-0.7
3,069,509	+				-0.6
3,069,509	+				+0.6
3,069,509	+				+2.8
3,069,510	-				-1.0
3,069,528	-				-1.5
3,069,574	-				+1.0
3,069,576	+				-0.3
3,069,577	-				-2.0
3,069,577	-				-2.0
3,069,626	+				+1.2
3,069,647	-				-0.0
3,069,681	+				+0.4