Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13925

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,991,151	+		DZA65_RS13920	0.43	-0.2
2,991,152	-		DZA65_RS13920	0.43	-0.5
2,991,152	-		DZA65_RS13920	0.43	-0.6
2,991,181	+		DZA65_RS13920	0.45	-1.6
2,991,181	+		DZA65_RS13920	0.45	-1.8
2,991,181	+		DZA65_RS13920	0.45	-1.7
2,991,182	-		DZA65_RS13920	0.45	+0.2
2,991,182	-		DZA65_RS13920	0.45	-3.2
2,991,182	-		DZA65_RS13920	0.45	-0.5
2,991,182	-		DZA65_RS13920	0.45	+0.8
2,991,182	-		DZA65_RS13920	0.45	-1.4
2,991,202	+		DZA65_RS13920	0.47	-2.1
2,991,205	+		DZA65_RS13920	0.47	-0.9
2,991,205	+		DZA65_RS13920	0.47	-0.8
2,991,205	+		DZA65_RS13920	0.47	-2.7
2,991,205	+		DZA65_RS13920	0.47	-1.5
2,991,206	-		DZA65_RS13920	0.47	-1.5
2,991,206	-		DZA65_RS13920	0.47	-1.8
2,991,206	-		DZA65_RS13920	0.47	-2.8
2,991,206	-		DZA65_RS13920	0.47	-2.3
2,991,206	-		DZA65_RS13920	0.47	-1.9
2,991,206	-		DZA65_RS13920	0.47	+0.6
2,991,206	-		DZA65_RS13920	0.47	-0.4
2,991,228	+		DZA65_RS13920	0.49	-0.9
2,991,229	-		DZA65_RS13920	0.49	-1.2
2,991,229	-		DZA65_RS13920	0.49	-0.4
2,991,229	-		DZA65_RS13920	0.49	-1.8
2,991,235	+		DZA65_RS13920	0.49	-4.1
2,991,255	+		DZA65_RS13920	0.51	-1.0
2,991,255	+		DZA65_RS13920	0.51	-0.2
2,991,256	-		DZA65_RS13920	0.51	-1.2
2,991,256	-		DZA65_RS13920	0.51	-3.8
2,991,256	-		DZA65_RS13920	0.51	-1.5
2,991,274	+		DZA65_RS13920	0.52	-2.0
2,991,274	+		DZA65_RS13920	0.52	-2.3
2,991,274	+		DZA65_RS13920	0.52	+0.5
2,991,274	+		DZA65_RS13920	0.52	-0.8
2,991,274	+		DZA65_RS13920	0.52	+0.2
2,991,274	+		DZA65_RS13920	0.52	-0.6
2,991,274	+		DZA65_RS13920	0.52	-1.0
2,991,275	-		DZA65_RS13920	0.52	-0.4
2,991,275	-		DZA65_RS13920	0.52	-3.1
2,991,275	-		DZA65_RS13920	0.52	-1.8
2,991,275	-		DZA65_RS13920	0.52	-0.8
2,991,275	-		DZA65_RS13920	0.52	-2.5
2,991,275	-		DZA65_RS13920	0.52	-1.3
2,991,275	-		DZA65_RS13920	0.52	-3.4
2,991,426	+		DZA65_RS13920	0.64	-1.8
2,991,426	+		DZA65_RS13920	0.64	+0.4
2,991,426	+		DZA65_RS13920	0.64	-1.2
2,991,427	-		DZA65_RS13920	0.64	-3.7
2,991,427	-		DZA65_RS13920	0.64	-1.0
2,991,427	-		DZA65_RS13920	0.64	-2.0
2,991,562	+		DZA65_RS13920	0.74	-1.4
2,991,563	-		DZA65_RS13920	0.74	-2.6
2,991,624	+		DZA65_RS13920	0.79	-1.8
2,991,625	-		DZA65_RS13920	0.79	-3.2
2,991,705	+		DZA65_RS13920	0.85	-2.2
2,991,705	+		DZA65_RS13920	0.85	-1.8
2,991,791	+				-0.3
2,991,792	-				-1.4
2,991,820	+				-1.8
2,991,821	-				-2.2
2,991,821	-				-3.3
2,991,861	+				-3.2
2,991,861	+				-3.1
2,991,861	+				-1.6
2,991,861	+				-2.3
2,991,861	+				+0.6
2,991,861	+				-1.5
2,991,862	-				-0.9
2,991,862	-				-1.2
2,991,862	-				-0.4
2,991,862	-				-1.8
2,991,862	-				-3.3
2,991,862	-				-1.8
2,991,862	-				-1.5
2,991,862	-				-0.9
2,991,862	-				-0.7
2,991,883	+				-0.9
2,991,884	-				-1.0
2,991,936	+				-2.0
2,991,937	-				-2.7
2,991,945	+				-1.3
2,991,946	-				-1.9
2,991,946	-				-1.3
2,991,946	-				-2.9
2,991,946	-				-2.6
2,991,960	+				-0.6
2,991,961	-				-2.1
2,991,989	+				-0.5
2,991,989	+				+0.1
2,991,989	+				+0.1
2,992,016	+				-1.0
2,992,016	+				-0.3
2,992,027	-				-1.0
2,992,034	+				-1.5
2,992,034	+				-0.6
2,992,036	+				-0.4
2,992,036	+				-1.4
2,992,037	-				-1.2
2,992,052	+				-0.2
2,992,052	+				-4.7
2,992,055	+				-2.2
2,992,055	+				-1.2
2,992,055	+				-1.6
2,992,055	+				-1.2
2,992,056	-				-2.3
2,992,056	-				-2.3
2,992,079	+				-1.0
2,992,079	+				-0.5
2,992,079	+				-2.2
2,992,079	+				-1.2
2,992,079	+				-2.3
2,992,080	-				-2.2
2,992,080	-				-2.3
2,992,080	-				-1.8
2,992,080	-				-0.2
2,992,099	+		DZA65_RS13925	0.12	-2.3
2,992,099	+		DZA65_RS13925	0.12	-0.6
2,992,159	+		DZA65_RS13925	0.24	-1.5
2,992,159	+		DZA65_RS13925	0.24	-2.0
2,992,159	+		DZA65_RS13925	0.24	-1.8
2,992,159	+		DZA65_RS13925	0.24	-0.8
2,992,159	+		DZA65_RS13925	0.24	-2.6
2,992,159	+		DZA65_RS13925	0.24	-1.5
2,992,159	+		DZA65_RS13925	0.24	-1.5
2,992,159	+		DZA65_RS13925	0.24	-2.0
2,992,159	+		DZA65_RS13925	0.24	-1.9
2,992,159	+		DZA65_RS13925	0.24	-1.5
2,992,159	+		DZA65_RS13925	0.24	-1.3
2,992,160	-		DZA65_RS13925	0.24	-1.5
2,992,160	-		DZA65_RS13925	0.24	-0.9
2,992,160	-		DZA65_RS13925	0.24	-1.2
2,992,160	-		DZA65_RS13925	0.24	-1.6
2,992,160	-				-0.8
2,992,160	-		DZA65_RS13925	0.24	-2.5
2,992,160	-		DZA65_RS13925	0.24	-2.3
2,992,160	-		DZA65_RS13925	0.24	-2.0
2,992,160	-		DZA65_RS13925	0.24	-2.2
2,992,160	-		DZA65_RS13925	0.24	-3.0
2,992,160	-		DZA65_RS13925	0.24	-2.5
2,992,166	+		DZA65_RS13925	0.26	-1.8
2,992,167	-		DZA65_RS13925	0.26	+0.8
2,992,232	+		DZA65_RS13925	0.39	-2.2
2,992,233	-		DZA65_RS13925	0.39	-1.6
2,992,252	+		DZA65_RS13925	0.43	-1.3
2,992,253	-		DZA65_RS13925	0.43	-2.4
2,992,253	-		DZA65_RS13925	0.43	-0.8
2,992,284	+		DZA65_RS13925	0.50	-2.0
2,992,284	+		DZA65_RS13925	0.50	+0.5
2,992,284	+		DZA65_RS13925	0.50	-1.7
2,992,284	+		DZA65_RS13925	0.50	-1.2
2,992,284	+		DZA65_RS13925	0.50	-0.4
2,992,284	+		DZA65_RS13925	0.50	-3.0
2,992,284	+		DZA65_RS13925	0.50	-0.2
2,992,285	-		DZA65_RS13925	0.50	-1.8
2,992,285	-		DZA65_RS13925	0.50	-0.8
2,992,285	-		DZA65_RS13925	0.50	-1.5
2,992,285	-		DZA65_RS13925	0.50	-1.6
2,992,285	-		DZA65_RS13925	0.50	-0.1
2,992,285	-		DZA65_RS13925	0.50	-0.9
2,992,285	-		DZA65_RS13925	0.50	-0.6
2,992,285	-		DZA65_RS13925	0.50	-0.8
2,992,285	-		DZA65_RS13925	0.50	-1.3
2,992,285	-		DZA65_RS13925	0.50	+2.8
2,992,285	-		DZA65_RS13925	0.50	-1.8
2,992,341	+		DZA65_RS13925	0.61	-0.8
2,992,341	+		DZA65_RS13925	0.61	-1.3
2,992,341	+		DZA65_RS13925	0.61	-1.1
2,992,342	-		DZA65_RS13925	0.62	-1.5
2,992,342	-		DZA65_RS13925	0.62	-2.6
2,992,370	+		DZA65_RS13925	0.67	-2.0
2,992,370	+		DZA65_RS13925	0.67	-0.9
2,992,370	+		DZA65_RS13925	0.67	-3.2
2,992,370	+		DZA65_RS13925	0.67	-0.6
2,992,370	+		DZA65_RS13925	0.67	+0.4
2,992,370	+		DZA65_RS13925	0.67	-2.9
2,992,371	-		DZA65_RS13925	0.67	-1.5
2,992,371	-		DZA65_RS13925	0.67	-1.5
2,992,371	-		DZA65_RS13925	0.67	-1.3
2,992,439	+		DZA65_RS13925	0.81	-0.8
2,992,439	+		DZA65_RS13925	0.81	+0.2
2,992,450	+		DZA65_RS13925	0.84	-1.3
2,992,451	-		DZA65_RS13925	0.84	-2.0
2,992,454	-		DZA65_RS13925	0.84	-2.1
2,992,481	+				+0.4
2,992,481	+				-1.7
2,992,482	-				-1.4
2,992,482	-				-1.8
2,992,482	-				-3.4
2,992,482	-				-1.5
2,992,482	-				-1.2
2,992,489	+				-1.9
2,992,489	+				+0.5
2,992,489	+				-2.5
2,992,490	-				-1.2
2,992,490	-				-0.7
2,992,518	-				-1.4
2,992,534	+				-3.3
2,992,535	-				-1.5
2,992,597	+				-2.6
2,992,601	-				-2.3
2,992,601	-				-2.0
2,992,653	-		DZA65_RS13930	0.12	-0.2
2,992,653	-		DZA65_RS13930	0.12	-2.6
2,992,653	-		DZA65_RS13930	0.12	-1.8
2,992,664	-		DZA65_RS13930	0.13	+0.8
2,992,778	-		DZA65_RS13930	0.24	+0.4
2,992,805	+		DZA65_RS13930	0.27	-1.2
2,992,806	-		DZA65_RS13930	0.27	-1.5
2,992,827	+		DZA65_RS13930	0.29	-2.4
2,992,828	-		DZA65_RS13930	0.29	-3.9
2,992,854	+		DZA65_RS13930	0.31	-2.2
2,992,854	+		DZA65_RS13930	0.31	-1.8
2,992,854	+		DZA65_RS13930	0.31	-1.2
2,992,854	+		DZA65_RS13930	0.31	-2.5
2,992,854	+		DZA65_RS13930	0.31	-0.5
2,992,854	+		DZA65_RS13930	0.31	-1.8
2,992,854	+		DZA65_RS13930	0.31	-0.9
2,992,854	+		DZA65_RS13930	0.31	-1.9
2,992,854	+		DZA65_RS13930	0.31	-2.4
2,992,854	+		DZA65_RS13930	0.31	-2.4
2,992,854	+		DZA65_RS13930	0.31	-1.0
2,992,855	-		DZA65_RS13930	0.31	-2.4
2,992,855	-		DZA65_RS13930	0.31	-0.2
2,992,855	-		DZA65_RS13930	0.31	-1.8
2,992,912	+		DZA65_RS13930	0.37	-1.0
2,992,978	+		DZA65_RS13930	0.44	-1.4
2,992,978	+		DZA65_RS13930	0.44	-2.2
2,992,985	-		DZA65_RS13930	0.44	-3.1
2,992,985	-		DZA65_RS13930	0.44	+0.2
2,993,015	-		DZA65_RS13930	0.47	-1.4
2,993,015	-		DZA65_RS13930	0.47	+0.0
2,993,033	+		DZA65_RS13930	0.49	-1.8
2,993,033	+		DZA65_RS13930	0.49	-0.8
2,993,033	+		DZA65_RS13930	0.49	-2.1
2,993,034	-		DZA65_RS13930	0.49	-2.9
2,993,034	-		DZA65_RS13930	0.49	-1.1
2,993,034	-		DZA65_RS13930	0.49	-0.6
2,993,034	-		DZA65_RS13930	0.49	-0.5
2,993,034	-		DZA65_RS13930	0.49	-1.2
2,993,034	-		DZA65_RS13930	0.49	-1.2
2,993,057	+		DZA65_RS13930	0.51	+0.3
2,993,058	-		DZA65_RS13930	0.51	-1.8
2,993,058	-		DZA65_RS13930	0.51	-0.2
2,993,064	+		DZA65_RS13930	0.52	-1.8
2,993,064	+		DZA65_RS13930	0.52	-1.0
2,993,064	+		DZA65_RS13930	0.52	-4.0
2,993,064	+		DZA65_RS13930	0.52	-1.6
2,993,064	+		DZA65_RS13930	0.52	-0.8
2,993,064	+		DZA65_RS13930	0.52	-0.9
2,993,064	+		DZA65_RS13930	0.52	+0.6
2,993,064	+		DZA65_RS13930	0.52	-1.5
2,993,064	+		DZA65_RS13930	0.52	-0.9
2,993,064	+		DZA65_RS13930	0.52	-0.8
2,993,064	+		DZA65_RS13930	0.52	-2.4
2,993,064	+		DZA65_RS13930	0.52	-1.5
2,993,064	+		DZA65_RS13930	0.52	-2.4
2,993,065	-		DZA65_RS13930	0.52	-1.6
2,993,065	-		DZA65_RS13930	0.52	-0.5
2,993,065	-		DZA65_RS13930	0.52	-0.9
2,993,065	-		DZA65_RS13930	0.52	-0.6
2,993,065	-		DZA65_RS13930	0.52	-1.9
2,993,065	-		DZA65_RS13930	0.52	+0.2
2,993,065	-		DZA65_RS13930	0.52	-1.3
2,993,075	+		DZA65_RS13930	0.53	-2.8
2,993,075	+		DZA65_RS13930	0.53	-0.6
2,993,075	+		DZA65_RS13930	0.53	-1.5
2,993,075	+		DZA65_RS13930	0.53	-0.8
2,993,076	-		DZA65_RS13930	0.53	-1.0
2,993,076	-		DZA65_RS13930	0.53	-1.6
2,993,076	-		DZA65_RS13930	0.53	-3.0
2,993,076	-				-0.8
2,993,098	-		DZA65_RS13930	0.55	-3.1
2,993,132	-		DZA65_RS13930	0.59	-0.9
2,993,188	+		DZA65_RS13930	0.64	-1.2
2,993,188	+		DZA65_RS13930	0.64	-1.4
2,993,188	+		DZA65_RS13930	0.64	-2.0
2,993,189	-		DZA65_RS13930	0.64	-0.6
2,993,189	-		DZA65_RS13930	0.64	-0.8
2,993,189	-		DZA65_RS13930	0.64	-1.9
2,993,189	-		DZA65_RS13930	0.64	-2.4
2,993,195	-		DZA65_RS13930	0.65	-1.8
2,993,195	-		DZA65_RS13930	0.65	-1.7
2,993,211	+		DZA65_RS13930	0.66	-1.8
2,993,211	+		DZA65_RS13930	0.66	-2.6
2,993,211	+		DZA65_RS13930	0.66	-3.2
2,993,211	+		DZA65_RS13930	0.66	-0.5
2,993,211	+		DZA65_RS13930	0.66	-0.4
2,993,212	-		DZA65_RS13930	0.67	-0.2
2,993,212	-		DZA65_RS13930	0.67	-0.9
2,993,212	-		DZA65_RS13930	0.67	-2.9
2,993,212	-		DZA65_RS13930	0.67	+0.8
2,993,301	+		DZA65_RS13930	0.75	-2.9
2,993,301	+		DZA65_RS13930	0.75	-1.5
2,993,301	+		DZA65_RS13930	0.75	-2.1
2,993,301	+		DZA65_RS13930	0.75	-1.6
2,993,302	-		DZA65_RS13930	0.75	-1.2
2,993,302	-		DZA65_RS13930	0.75	-0.8
2,993,302	-		DZA65_RS13930	0.75	+1.4
2,993,386	+		DZA65_RS13930	0.84	-1.0
2,993,386	+		DZA65_RS13930	0.84	-1.7
2,993,386	+		DZA65_RS13930	0.84	-1.7
2,993,387	-		DZA65_RS13930	0.84	-3.6
2,993,387	-		DZA65_RS13930	0.84	-1.0
2,993,401	+		DZA65_RS13930	0.85	-2.1
2,993,401	+		DZA65_RS13930	0.85	-1.8
2,993,461	+				-2.1
2,993,461	+				-2.9
2,993,461	+				-1.2
2,993,466	+				-0.6
2,993,466	+				-1.1
2,993,466	+				-1.2
2,993,466	+				-2.1
2,993,466	+				-2.8
2,993,466	+				-1.5
2,993,466	+				-1.9
2,993,467	-				-1.0
2,993,467	-				+0.1
2,993,467	-				-0.9
2,993,467	-				-0.4
2,993,467	-				-3.1
2,993,467	-				-2.4
2,993,467	-				-2.5
2,993,478	-				-1.0
2,993,478	-				-1.8
2,993,478	-				-1.9
2,993,478	-				-0.4
2,993,478	-				-1.3
2,993,503	+				-0.8
2,993,515	-				+1.2