Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12860

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,754,393	+		DZA65_RS12850	0.37	-0.5
2,754,393	+		DZA65_RS12850	0.37	+0.2
2,754,394	-		DZA65_RS12850	0.38	+1.5
2,754,394	-		DZA65_RS12850	0.38	+2.0
2,754,394	-		DZA65_RS12850	0.38	-0.4
2,754,394	-		DZA65_RS12850	0.38	+0.2
2,754,394	-		DZA65_RS12850	0.38	-2.9
2,754,399	+		DZA65_RS12850	0.38	-0.4
2,754,399	+		DZA65_RS12850	0.38	+0.1
2,754,399	+		DZA65_RS12850	0.38	+1.9
2,754,399	+		DZA65_RS12850	0.38	+0.7
2,754,399	+		DZA65_RS12850	0.38	+1.3
2,754,400	-		DZA65_RS12850	0.38	-0.6
2,754,400	-		DZA65_RS12850	0.38	-1.1
2,754,400	-		DZA65_RS12850	0.38	-0.9
2,754,522	+		DZA65_RS12850	0.51	-0.5
2,754,522	+		DZA65_RS12850	0.51	-2.2
2,754,523	-		DZA65_RS12850	0.51	-1.6
2,754,523	-		DZA65_RS12850	0.51	+0.3
2,754,523	-		DZA65_RS12850	0.51	-0.5
2,754,529	+		DZA65_RS12850	0.52	+0.5
2,754,607	+		DZA65_RS12850	0.60	-0.6
2,754,607	+		DZA65_RS12850	0.60	-0.3
2,754,669	+		DZA65_RS12850	0.67	-0.3
2,754,669	+		DZA65_RS12850	0.67	+0.3
2,754,669	+		DZA65_RS12850	0.67	-0.9
2,754,670	-		DZA65_RS12850	0.67	-0.7
2,754,670	-		DZA65_RS12850	0.67	-0.4
2,754,896	+				+2.5
2,754,896	+				+2.7
2,754,936	+				+0.5
2,754,937	-				-0.9
2,754,937	-				-2.1
2,754,960	-				+0.9
2,754,966	-				+0.3
2,754,980	-				+0.4
2,754,980	-				-0.7
2,755,026	-				-1.6
2,755,026	-				+0.6
2,755,118	-				+1.1
2,755,166	-				+2.5
2,755,166	-				-0.3
2,755,166	-				-1.6
2,755,166	-				+1.0
2,755,174	+				-1.1
2,755,174	+				+0.2
2,755,175	-				+0.1
2,755,175	-				+0.2
2,755,175	-				-0.3
2,755,175	-				-0.9
2,755,182	-				-0.1
2,755,198	+				+0.7
2,755,198	+				+2.1
2,755,199	-				-1.6
2,755,199	-				+0.3
2,755,206	+				+1.3
2,755,206	+				-0.5
2,755,257	-				+0.6
2,755,362	+				+0.2
2,755,363	-				-1.5
2,755,376	+				-1.9
2,755,377	-				-1.3
2,755,387	-				-0.5
2,755,546	+		DZA65_RS12860	0.18	-0.5
2,755,546	+		DZA65_RS12860	0.18	-0.0
2,755,547	-		DZA65_RS12860	0.18	-0.6
2,755,547	-		DZA65_RS12860	0.18	+1.5
2,755,547	-		DZA65_RS12860	0.18	+0.9
2,755,547	-		DZA65_RS12860	0.18	+0.3
2,755,550	+		DZA65_RS12860	0.19	-0.6
2,755,550	+		DZA65_RS12860	0.19	-0.9
2,755,551	-		DZA65_RS12860	0.19	-1.3
2,755,551	-		DZA65_RS12860	0.19	-0.3
2,755,551	-		DZA65_RS12860	0.19	-1.5
2,755,670	+		DZA65_RS12860	0.31	-0.6
2,755,750	+		DZA65_RS12860	0.39	+0.1
2,755,750	+		DZA65_RS12860	0.39	+0.3
2,755,751	-		DZA65_RS12860	0.39	-1.9
2,755,842	-		DZA65_RS12860	0.48	+1.6
2,755,842	-		DZA65_RS12860	0.48	-0.8
2,755,854	+		DZA65_RS12860	0.50	-0.0
2,755,854	+		DZA65_RS12860	0.50	-0.3
2,755,854	+		DZA65_RS12860	0.50	+1.2
2,755,855	-		DZA65_RS12860	0.50	-0.9
2,755,855	-		DZA65_RS12860	0.50	-0.9
2,755,855	-		DZA65_RS12860	0.50	-1.6
2,755,902	-		DZA65_RS12860	0.54	-0.6
2,755,902	-		DZA65_RS12860	0.54	-0.0
2,755,977	+		DZA65_RS12860	0.62	-2.1
2,755,977	+		DZA65_RS12860	0.62	-1.9
2,755,982	+		DZA65_RS12860	0.63	+1.7
2,756,018	+		DZA65_RS12860	0.66	-0.2
2,756,018	+		DZA65_RS12860	0.66	+0.3
2,756,019	-		DZA65_RS12860	0.66	-1.7
2,756,064	-		DZA65_RS12860	0.71	-0.6
2,756,064	-		DZA65_RS12860	0.71	+0.4
2,756,064	-		DZA65_RS12860	0.71	+1.3
2,756,065	+		DZA65_RS12860	0.71	-1.4
2,756,065	+		DZA65_RS12860	0.71	-1.6
2,756,065	+		DZA65_RS12860	0.71	-0.5
2,756,065	+		DZA65_RS12860	0.71	-2.4
2,756,065	+		DZA65_RS12860	0.71	-0.9
2,756,065	+		DZA65_RS12860	0.71	-1.7
2,756,065	+				-1.9
2,756,065	+		DZA65_RS12860	0.71	+0.1
2,756,065	+		DZA65_RS12860	0.71	+1.2
2,756,065	+		DZA65_RS12860	0.71	+0.0
2,756,065	+		DZA65_RS12860	0.71	+0.5
2,756,066	-		DZA65_RS12860	0.71	-1.8
2,756,066	-		DZA65_RS12860	0.71	-1.3
2,756,066	-		DZA65_RS12860	0.71	+0.2
2,756,066	-		DZA65_RS12860	0.71	+1.1
2,756,066	-		DZA65_RS12860	0.71	-1.3
2,756,066	-		DZA65_RS12860	0.71	-2.7
2,756,066	-		DZA65_RS12860	0.71	-1.1
2,756,066	-		DZA65_RS12860	0.71	-1.7
2,756,066	-		DZA65_RS12860	0.71	-1.4
2,756,066	-		DZA65_RS12860	0.71	-1.3
2,756,066	-		DZA65_RS12860	0.71	-1.6
2,756,066	-		DZA65_RS12860	0.71	-1.0
2,756,066	-		DZA65_RS12860	0.71	-0.5
2,756,066	-		DZA65_RS12860	0.71	+0.8
2,756,109	+		DZA65_RS12860	0.75	+0.1
2,756,110	-		DZA65_RS12860	0.75	+0.1
2,756,110	-		DZA65_RS12860	0.75	-0.8
2,756,151	+		DZA65_RS12860	0.80	-1.3
2,756,151	+		DZA65_RS12860	0.80	-0.1
2,756,151	+		DZA65_RS12860	0.80	-0.0
2,756,151	+		DZA65_RS12860	0.80	-0.1
2,756,151	+		DZA65_RS12860	0.80	-1.3
2,756,151	+		DZA65_RS12860	0.80	-1.3
2,756,151	+		DZA65_RS12860	0.80	-2.7
2,756,151	+		DZA65_RS12860	0.80	-0.6
2,756,152	-		DZA65_RS12860	0.80	-0.4
2,756,152	-		DZA65_RS12860	0.80	+0.4
2,756,152	-		DZA65_RS12860	0.80	+0.7
2,756,152	-		DZA65_RS12860	0.80	+1.1
2,756,152	-		DZA65_RS12860	0.80	+0.1
2,756,152	-		DZA65_RS12860	0.80	-0.3
2,756,152	-		DZA65_RS12860	0.80	-2.3
2,756,152	-		DZA65_RS12860	0.80	-2.1
2,756,262	+				+0.7
2,756,263	-				-0.6
2,756,303	+				+0.7
2,756,303	+				-0.6
2,756,328	-				+0.9
2,756,333	+				+0.4
2,756,333	+				+0.8
2,756,334	-				-2.3
2,756,387	-				-2.5
2,756,466	+				+0.6
2,756,466	+				+0.4
2,756,466	+				-0.3
2,756,467	-				+0.7
2,756,467	-				-0.9
2,756,467	-				-2.0
2,756,467	-				-2.1
2,756,540	+				-0.9
2,756,541	-				-1.4
2,756,541	-				-0.5
2,756,541	-				-0.9
2,756,541	-				+0.8
2,756,545	+				-1.0
2,756,546	-				-0.0
2,756,547	+				+0.7
2,756,548	-				-0.9
2,756,562	+				-1.6
2,756,611	+				-0.3
2,756,612	-				-0.1
2,756,612	-				-0.0
2,756,612	-				-0.5
2,756,612	-				+0.1
2,756,631	+				-1.0
2,756,631	+				+0.1
2,756,631	+				-1.9
2,756,631	+				-0.7
2,756,632	-				+1.3
2,756,632	-				-1.6
2,756,632	-				-1.3
2,756,632	-				+0.1
2,756,632	-				-0.4
2,756,637	+				-1.1
2,756,637	+				-2.1
2,756,637	+				-0.3
2,756,638	-				+0.4
2,756,688	+				+0.9
2,756,689	-				-3.1
2,756,689	-				-1.5
2,756,689	-				+0.7
2,756,689	-				-0.9
2,756,749	-		DZA65_RS12865	0.13	-1.5
2,756,749	-		DZA65_RS12865	0.13	-2.7
2,756,762	-				-1.1
2,756,762	-		DZA65_RS12865	0.14	-0.3
2,756,826	+		DZA65_RS12865	0.18	-0.7
2,756,827	-				-1.1
2,756,850	-		DZA65_RS12865	0.20	+0.7
2,756,850	-		DZA65_RS12865	0.20	-0.3
2,756,850	-		DZA65_RS12865	0.20	-0.3
2,756,850	-		DZA65_RS12865	0.20	+1.7
2,756,886	+		DZA65_RS12865	0.22	-0.3
2,756,886	+		DZA65_RS12865	0.22	-0.3
2,756,886	+		DZA65_RS12865	0.22	-0.1
2,756,921	+		DZA65_RS12865	0.24	-0.5
2,756,922	-		DZA65_RS12865	0.24	-1.6
2,756,991	+		DZA65_RS12865	0.28	+0.3
2,756,991	+		DZA65_RS12865	0.28	-1.9
2,756,991	+		DZA65_RS12865	0.28	-1.3
2,756,991	+		DZA65_RS12865	0.28	-0.2
2,756,992	-		DZA65_RS12865	0.28	-0.9
2,756,992	-		DZA65_RS12865	0.28	-0.1
2,756,992	-		DZA65_RS12865	0.28	-1.9
2,756,992	-		DZA65_RS12865	0.28	-1.1
2,756,992	-		DZA65_RS12865	0.28	+0.9
2,756,992	-		DZA65_RS12865	0.28	+0.6
2,756,992	-		DZA65_RS12865	0.28	+0.6
2,757,045	-		DZA65_RS12865	0.31	-1.3
2,757,081	+		DZA65_RS12865	0.34	+0.0
2,757,082	-		DZA65_RS12865	0.34	+1.7
2,757,082	-		DZA65_RS12865	0.34	-0.4
2,757,187	+		DZA65_RS12865	0.40	-0.3
2,757,201	+		DZA65_RS12865	0.41	+2.3
2,757,202	-		DZA65_RS12865	0.41	+0.7
2,757,202	-		DZA65_RS12865	0.41	-0.5
2,757,202	-		DZA65_RS12865	0.41	-1.3
2,757,261	+		DZA65_RS12865	0.45	+2.0
2,757,261	+		DZA65_RS12865	0.45	+0.7
2,757,261	+		DZA65_RS12865	0.45	+0.5
2,757,261	+		DZA65_RS12865	0.45	+0.4
2,757,261	+		DZA65_RS12865	0.45	-0.3
2,757,261	+		DZA65_RS12865	0.45	-1.9
2,757,261	+		DZA65_RS12865	0.45	-0.7
2,757,261	+		DZA65_RS12865	0.45	+2.1
2,757,262	-		DZA65_RS12865	0.45	-1.6
2,757,262	-		DZA65_RS12865	0.45	-0.3
2,757,262	-		DZA65_RS12865	0.45	+1.7
2,757,262	-		DZA65_RS12865	0.45	-0.0
2,757,262	-		DZA65_RS12865	0.45	+1.1
2,757,262	-		DZA65_RS12865	0.45	+0.5
2,757,262	-		DZA65_RS12865	0.45	-0.7
2,757,264	+		DZA65_RS12865	0.45	+0.6
2,757,264	+		DZA65_RS12865	0.45	-0.6
2,757,264	+		DZA65_RS12865	0.45	-1.3
2,757,264	+		DZA65_RS12865	0.45	-0.9
2,757,264	+		DZA65_RS12865	0.45	+1.7
2,757,264	+		DZA65_RS12865	0.45	-1.9
2,757,264	+		DZA65_RS12865	0.45	+1.1
2,757,265	-		DZA65_RS12865	0.45	+1.3
2,757,265	-		DZA65_RS12865	0.45	+0.1
2,757,265	-		DZA65_RS12865	0.45	-0.2
2,757,265	-		DZA65_RS12865	0.45	+0.1
2,757,265	-		DZA65_RS12865	0.45	+0.1
2,757,265	-		DZA65_RS12865	0.45	+0.4
2,757,265	-		DZA65_RS12865	0.45	+0.0
2,757,265	-		DZA65_RS12865	0.45	-0.5
2,757,265	-		DZA65_RS12865	0.45	-1.9
2,757,265	-		DZA65_RS12865	0.45	+0.6
2,757,267	+		DZA65_RS12865	0.45	+1.4
2,757,267	+		DZA65_RS12865	0.45	-1.0
2,757,267	+		DZA65_RS12865	0.45	+0.3
2,757,267	+		DZA65_RS12865	0.45	-0.3
2,757,267	+		DZA65_RS12865	0.45	-0.9
2,757,267	+		DZA65_RS12865	0.45	-0.3
2,757,267	+		DZA65_RS12865	0.45	-2.1
2,757,267	+		DZA65_RS12865	0.45	-1.0
2,757,267	+		DZA65_RS12865	0.45	-1.3
2,757,267	+		DZA65_RS12865	0.45	+0.5
2,757,267	+		DZA65_RS12865	0.45	+0.7
2,757,267	+		DZA65_RS12865	0.45	+0.9
2,757,267	+		DZA65_RS12865	0.45	-1.0
2,757,267	+		DZA65_RS12865	0.45	-1.3
2,757,268	-		DZA65_RS12865	0.45	-1.0
2,757,268	-		DZA65_RS12865	0.45	+1.1
2,757,268	-		DZA65_RS12865	0.45	+0.1
2,757,268	-		DZA65_RS12865	0.45	+0.1
2,757,268	-		DZA65_RS12865	0.45	-1.1
2,757,268	-		DZA65_RS12865	0.45	-1.6
2,757,268	-		DZA65_RS12865	0.45	+0.1
2,757,268	-		DZA65_RS12865	0.45	+0.0