Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12020

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,557,622	+				-1.9
2,557,641	+				-0.7
2,557,642	-				+0.7
2,557,642	-				+1.1
2,557,660	+				+0.0
2,557,660	+				-0.1
2,557,660	+				-0.9
2,557,660	+				+0.2
2,557,661	-				-1.0
2,557,661	-				+0.2
2,557,661	-				-1.0
2,557,661	-				-0.9
2,557,661	-				-0.1
2,557,661	-				+0.2
2,557,661	-				+0.7
2,557,665	+				-1.6
2,557,665	+				+0.7
2,557,665	+				-0.4
2,557,665	+				-0.1
2,557,666	-				+1.7
2,557,666	-				+1.2
2,557,666	-				-1.1
2,557,666	-				+0.2
2,557,666	-				-1.3
2,557,666	-				-0.2
2,557,674	+				-0.3
2,557,674	+				-0.4
2,557,674	+				+1.3
2,557,674	+				-1.3
2,557,674	+				-0.6
2,557,675	-				-1.3
2,557,675	-				-1.3
2,557,678	-				+1.3
2,557,678	-				-2.1
2,557,686	+				+0.6
2,557,686	+				+1.3
2,557,687	-				+0.1
2,557,700	+				+0.7
2,557,732	-				-0.9
2,557,757	+				-1.9
2,557,758	-				-1.6
2,557,765	+				+1.5
2,557,765	+				+0.7
2,557,766	-				+0.3
2,557,808	+				-2.3
2,557,808	+				-0.6
2,557,808	+				-0.9
2,557,808	+				-0.9
2,557,808	+				+1.1
2,557,808	+				+0.0
2,557,809	-				-0.3
2,557,809	-				-0.2
2,557,809	-				-0.6
2,557,809	-				-1.3
2,557,809	-				+0.5
2,557,809	-				-1.3
2,557,809	-				-0.1
2,557,809	-				-1.9
2,557,809	-				-0.9
2,557,809	-				-0.7
2,557,809	-				-1.3
2,557,810	+				-0.3
2,557,811	-				-0.1
2,557,811	-				-0.2
2,557,825	+				+1.3
2,557,828	+				-0.1
2,557,828	+				-0.6
2,557,828	+				+1.4
2,557,828	+				-0.3
2,557,829	-				+1.3
2,557,841	+				-0.3
2,557,857	+				+0.3
2,557,857	+				+0.5
2,557,858	-				-0.2
2,557,888	-				+0.4
2,557,888	-				-0.5
2,557,888	-				-0.2
2,558,186	+				-0.3
2,558,186	+				-0.5
2,558,187	-				+0.9
2,558,187	-				-1.1
2,558,236	+				+0.1
2,558,237	-				+0.2
2,558,360	-		DZA65_RS12020	0.18	+0.7
2,558,482	+		DZA65_RS12020	0.51	-1.9
2,558,482	+		DZA65_RS12020	0.51	-1.8
2,558,483	-		DZA65_RS12020	0.51	+0.7
2,558,483	-		DZA65_RS12020	0.51	-2.9
2,558,486	+		DZA65_RS12020	0.52	-1.1
2,558,532	-		DZA65_RS12020	0.65	+0.4
2,558,537	+		DZA65_RS12020	0.66	-1.9
2,558,546	+		DZA65_RS12020	0.69	-1.9
2,558,549	-		DZA65_RS12020	0.69	-1.5
2,558,585	+		DZA65_RS12020	0.79	+0.7
2,558,586	-		DZA65_RS12020	0.80	+0.0
2,558,586	-		DZA65_RS12020	0.80	-0.9
2,558,608	-		DZA65_RS12020	0.86	-2.5
2,558,661	-				+0.1
2,558,664	-				-0.9
2,558,664	-				+0.0
2,558,716	+				-0.2
2,558,731	+		DZA65_RS12025	0.10	-0.3
2,558,754	+		DZA65_RS12025	0.14	-0.2
2,558,754	+		DZA65_RS12025	0.14	+0.4
2,558,754	+		DZA65_RS12025	0.14	+0.3
2,558,754	+				+1.0
2,558,755	-		DZA65_RS12025	0.14	+0.7
2,558,755	-		DZA65_RS12025	0.14	+0.6
2,558,788	-		DZA65_RS12025	0.20	-0.5
2,558,846	-		DZA65_RS12025	0.30	-2.6
2,558,853	+		DZA65_RS12025	0.31	-0.5
2,558,882	-		DZA65_RS12025	0.36	+0.3
2,558,896	+		DZA65_RS12025	0.39	-0.3
2,558,910	+		DZA65_RS12025	0.41	-1.4
2,558,925	+		DZA65_RS12025	0.44	-0.9
2,558,925	+		DZA65_RS12025	0.44	-0.6
2,558,926	-		DZA65_RS12025	0.44	-1.2
2,558,930	-		DZA65_RS12025	0.45	-0.3
2,558,930	-		DZA65_RS12025	0.45	+0.7
2,558,930	-		DZA65_RS12025	0.45	-1.3
2,558,941	+		DZA65_RS12025	0.46	+1.3
2,558,942	-		DZA65_RS12025	0.47	+0.7
2,558,942	-		DZA65_RS12025	0.47	-0.9
2,558,974	+		DZA65_RS12025	0.52	+0.1
2,558,974	+		DZA65_RS12025	0.52	-1.3
2,558,975	-		DZA65_RS12025	0.52	-0.3
2,558,986	-		DZA65_RS12025	0.54	+0.6
2,559,051	+		DZA65_RS12025	0.65	+0.2
2,559,077	-		DZA65_RS12025	0.70	+0.0
2,559,077	-		DZA65_RS12025	0.70	-0.3
2,559,077	-		DZA65_RS12025	0.70	-1.3
2,559,077	-		DZA65_RS12025	0.70	-0.1
2,559,085	+		DZA65_RS12025	0.71	-0.2
2,559,091	+		DZA65_RS12025	0.72	+1.1
2,559,091	+		DZA65_RS12025	0.72	-2.6
2,559,092	-		DZA65_RS12025	0.73	-0.1
2,559,097	+		DZA65_RS12025	0.73	-0.9
2,559,098	-		DZA65_RS12025	0.74	-2.8
2,559,111	+		DZA65_RS12025	0.76	-2.1
2,559,111	+		DZA65_RS12025	0.76	-2.8
2,559,115	+		DZA65_RS12025	0.77	-1.2
2,559,115	+		DZA65_RS12025	0.77	+0.5
2,559,115	+		DZA65_RS12025	0.77	+0.7
2,559,115	+		DZA65_RS12025	0.77	+1.0
2,559,115	+		DZA65_RS12025	0.77	-0.3
2,559,116	-		DZA65_RS12025	0.77	-1.3
2,559,116	-		DZA65_RS12025	0.77	+2.3
2,559,116	-		DZA65_RS12025	0.77	-1.9
2,559,126	-		DZA65_RS12025	0.78	+1.3
2,559,126	-		DZA65_RS12025	0.78	-1.4
2,559,126	-		DZA65_RS12025	0.78	-1.4
2,559,203	+				-1.1
2,559,203	+				-0.7
2,559,204	-				+1.7
2,559,204	-				-1.1
2,559,204	-				-0.9
2,559,204	-				+1.7
2,559,204	-				-0.3
2,559,204	-				+0.7
2,559,204	-				+1.1
2,559,242	+				-0.7
2,559,242	+				+0.3
2,559,242	+				+1.7
2,559,242	+				+0.9
2,559,243	-				+1.3
2,559,243	-				+0.1
2,559,243	-				+1.2
2,559,243	-				-0.6
2,559,243	-				+0.4
2,559,243	-				-0.3
2,559,243	-				-0.8
2,559,243	-				+0.4
2,559,243	-				-1.1
2,559,256	+				-1.9
2,559,257	-				+0.5
2,559,257	-				+0.3
2,559,257	-				-0.9
2,559,257	-				+0.2
2,559,262	-				+0.2
2,559,360	-				-0.3
2,559,401	-				-1.6
2,559,435	+				-0.3
2,559,435	+				+0.7
2,559,435	+				+0.7
2,559,435	+				-1.3
2,559,435	+				+2.0
2,559,435	+				-2.5
2,559,435	+				+1.5
2,559,435	+				+0.5
2,559,435	+				-0.1
2,559,436	-				-0.3
2,559,436	-				-0.8
2,559,436	-				-0.4
2,559,436	-				+0.2
2,559,505	+				+0.1
2,559,512	-				-0.7
2,559,512	-				+0.3
2,559,512	-				+1.0
2,559,605	-				+0.3
2,559,653	-				-1.3