Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11270

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,392,416	+		DZA65_RS11265	0.67	-2.3
2,392,534	+		DZA65_RS11265	0.71	+0.4
2,392,534	+		DZA65_RS11265	0.71	-2.5
2,392,534	+		DZA65_RS11265	0.71	+0.1
2,392,535	-		DZA65_RS11265	0.71	-1.5
2,392,535	-		DZA65_RS11265	0.71	-1.7
2,392,700	-		DZA65_RS11265	0.76	-0.2
2,392,700	-		DZA65_RS11265	0.76	-2.6
2,392,814	-		DZA65_RS11265	0.80	+0.2
2,392,895	+		DZA65_RS11265	0.83	-0.2
2,392,895	+		DZA65_RS11265	0.83	+0.7
2,392,895	+		DZA65_RS11265	0.83	-1.3
2,392,895	+		DZA65_RS11265	0.83	-1.9
2,392,895	+		DZA65_RS11265	0.83	-0.3
2,392,896	-		DZA65_RS11265	0.83	-1.9
2,392,896	-		DZA65_RS11265	0.83	-0.3
2,392,896	-		DZA65_RS11265	0.83	-2.2
2,392,896	-		DZA65_RS11265	0.83	-1.7
2,392,896	-		DZA65_RS11265	0.83	-1.3
2,392,934	-		DZA65_RS11265	0.84	+0.7
2,392,960	+		DZA65_RS11265	0.85	-0.5
2,392,961	-		DZA65_RS11265	0.85	-0.5
2,392,961	-		DZA65_RS11265	0.85	-0.8
2,392,961	-		DZA65_RS11265	0.85	-1.0
2,392,975	+		DZA65_RS11265	0.86	-1.7
2,393,008	-		DZA65_RS11265	0.87	-1.3
2,393,023	+		DZA65_RS11265	0.87	-0.8
2,393,023	+		DZA65_RS11265	0.87	-1.5
2,393,024	-		DZA65_RS11265	0.87	+0.1
2,393,024	-		DZA65_RS11265	0.87	-0.2
2,393,024	-		DZA65_RS11265	0.87	-0.4
2,393,024	-		DZA65_RS11265	0.87	-1.2
2,393,024	-		DZA65_RS11265	0.87	-2.3
2,393,026	+		DZA65_RS11265	0.87	-1.7
2,393,026	+		DZA65_RS11265	0.87	-2.2
2,393,026	+		DZA65_RS11265	0.87	-1.1
2,393,026	+		DZA65_RS11265	0.87	+0.7
2,393,026	+		DZA65_RS11265	0.87	-0.9
2,393,026	+		DZA65_RS11265	0.87	-0.3
2,393,026	+		DZA65_RS11265	0.87	-0.5
2,393,026	+		DZA65_RS11265	0.87	-1.9
2,393,026	+				-0.9
2,393,027	-				-1.3
2,393,027	-		DZA65_RS11265	0.87	-1.7
2,393,027	-		DZA65_RS11265	0.87	-1.2
2,393,027	-		DZA65_RS11265	0.87	-1.7
2,393,027	-		DZA65_RS11265	0.87	+0.9
2,393,027	-		DZA65_RS11265	0.87	-0.8
2,393,027	-		DZA65_RS11265	0.87	-2.3
2,393,027	-		DZA65_RS11265	0.87	-1.2
2,393,027	-		DZA65_RS11265	0.87	-1.1
2,393,028	+		DZA65_RS11265	0.87	-2.5
2,393,028	+		DZA65_RS11265	0.87	+0.2
2,393,028	+		DZA65_RS11265	0.87	-1.3
2,393,029	-		DZA65_RS11265	0.87	-1.5
2,393,153	-				-1.3
2,393,153	-				-2.3
2,393,207	+				-1.3
2,393,270	+				-2.4
2,393,271	-				-0.9
2,393,271	-				-2.7
2,393,271	-				-2.3
2,393,318	+				-2.7
2,393,334	+				+1.0
2,393,334	+				-1.1
2,393,334	+				-2.2
2,393,335	-				-0.5
2,393,335	-				-1.2
2,393,335	-				-1.9
2,393,335	-				-1.5
2,393,335	-				-2.5
2,393,368	+				-0.9
2,393,368	+				-1.2
2,393,368	+				-0.7
2,393,369	-				-1.7
2,393,369	-				+0.7
2,393,369	-				-3.3
2,393,439	-				-0.3
2,393,470	+				+1.7
2,393,470	+				-1.8
2,393,470	+				-1.2
2,393,470	+				+0.7
2,393,470	+				-1.3
2,393,470	+				-1.2
2,393,471	-				-0.2
2,393,471	-				-2.2
2,393,471	-				-1.5
2,393,471	-				+0.7
2,393,525	+				-1.8
2,393,526	-				-0.1
2,393,649	+				-0.6
2,393,649	+				-1.2
2,393,649	+				-0.2
2,393,722	-		DZA65_RS11270	0.13	-1.4
2,393,732	+		DZA65_RS11270	0.13	-1.9
2,393,732	+		DZA65_RS11270	0.13	-1.7
2,393,733	-		DZA65_RS11270	0.13	-1.0
2,393,849	+		DZA65_RS11270	0.18	-3.7
2,393,850	-		DZA65_RS11270	0.18	-2.5
2,393,853	-		DZA65_RS11270	0.18	-1.2
2,393,853	-		DZA65_RS11270	0.18	-1.3
2,393,853	-		DZA65_RS11270	0.18	-0.9
2,393,853	-		DZA65_RS11270	0.18	-1.3
2,393,853	-		DZA65_RS11270	0.18	-1.3
2,393,853	-		DZA65_RS11270	0.18	-1.1
2,393,853	-		DZA65_RS11270	0.18	-0.9
2,393,853	-				-1.7
2,393,853	-		DZA65_RS11270	0.18	+1.7
2,394,007	-		DZA65_RS11270	0.24	-1.9
2,394,144	+		DZA65_RS11270	0.30	-1.1
2,394,144	+		DZA65_RS11270	0.30	-0.9
2,394,145	-		DZA65_RS11270	0.30	-2.3
2,394,145	-		DZA65_RS11270	0.30	-2.2
2,394,156	+		DZA65_RS11270	0.30	-0.8
2,394,257	+		DZA65_RS11270	0.34	-1.9
2,394,257	+		DZA65_RS11270	0.34	-2.3
2,394,258	-		DZA65_RS11270	0.34	-0.8
2,394,291	-		DZA65_RS11270	0.35	-1.5
2,394,291	-		DZA65_RS11270	0.35	+0.4
2,394,291	-		DZA65_RS11270	0.35	-2.4
2,394,291	-		DZA65_RS11270	0.35	-1.7
2,394,291	-		DZA65_RS11270	0.35	-2.2
2,394,311	-		DZA65_RS11270	0.36	-1.9
2,394,311	-		DZA65_RS11270	0.36	+0.5
2,394,311	-		DZA65_RS11270	0.36	-1.9
2,394,311	-		DZA65_RS11270	0.36	-1.9
2,394,576	+		DZA65_RS11270	0.47	-0.6
2,394,577	-		DZA65_RS11270	0.47	-2.5
2,394,591	+		DZA65_RS11270	0.47	-0.6
2,394,592	-		DZA65_RS11270	0.47	-0.9
2,394,593	+		DZA65_RS11270	0.47	-1.5
2,394,594	-				-2.5
2,394,695	+		DZA65_RS11270	0.51	-0.9
2,394,695	+		DZA65_RS11270	0.51	-3.3
2,394,787	-		DZA65_RS11270	0.55	-1.2
2,394,788	+				-1.3
2,394,788	+		DZA65_RS11270	0.55	-2.0
2,394,788	+		DZA65_RS11270	0.55	-2.5
2,394,813	+				-0.3
2,394,813	+		DZA65_RS11270	0.56	-1.5
2,394,814	-		DZA65_RS11270	0.56	-1.3
2,394,990	+		DZA65_RS11270	0.63	-2.1
2,395,022	+		DZA65_RS11270	0.64	-0.3
2,395,075	+		DZA65_RS11270	0.66	-1.5
2,395,076	-		DZA65_RS11270	0.67	-1.6
2,395,076	-		DZA65_RS11270	0.67	+1.7
2,395,120	+		DZA65_RS11270	0.68	-0.3
2,395,120	+		DZA65_RS11270	0.68	-0.6
2,395,121	-		DZA65_RS11270	0.68	-0.6
2,395,132	-		DZA65_RS11270	0.69	-1.2
2,395,132	-		DZA65_RS11270	0.69	-2.3
2,395,132	-		DZA65_RS11270	0.69	-1.7
2,395,212	+		DZA65_RS11270	0.72	-1.3
2,395,212	+		DZA65_RS11270	0.72	-0.7
2,395,212	+		DZA65_RS11270	0.72	-1.2
2,395,212	+		DZA65_RS11270	0.72	-2.3
2,395,212	+		DZA65_RS11270	0.72	-1.1
2,395,212	+		DZA65_RS11270	0.72	-1.3
2,395,212	+		DZA65_RS11270	0.72	-1.1
2,395,212	+		DZA65_RS11270	0.72	-0.1
2,395,212	+		DZA65_RS11270	0.72	-1.3
2,395,212	+		DZA65_RS11270	0.72	-1.6
2,395,212	+		DZA65_RS11270	0.72	-0.7
2,395,213	-		DZA65_RS11270	0.72	-0.7
2,395,213	-		DZA65_RS11270	0.72	-2.3
2,395,213	-		DZA65_RS11270	0.72	-2.9
2,395,213	-		DZA65_RS11270	0.72	-1.3
2,395,213	-		DZA65_RS11270	0.72	-2.3
2,395,213	-				-2.2
2,395,213	-		DZA65_RS11270	0.72	-0.2
2,395,338	+		DZA65_RS11270	0.77	-1.3
2,395,338	+		DZA65_RS11270	0.77	-2.2
2,395,338	+		DZA65_RS11270	0.77	-0.6
2,395,338	+		DZA65_RS11270	0.77	-2.7
2,395,338	+		DZA65_RS11270	0.77	-2.8
2,395,338	+		DZA65_RS11270	0.77	-2.0
2,395,338	+		DZA65_RS11270	0.77	-0.2
2,395,338	+		DZA65_RS11270	0.77	-3.6
2,395,339	-		DZA65_RS11270	0.77	-3.2
2,395,339	-		DZA65_RS11270	0.77	+0.4
2,395,339	-		DZA65_RS11270	0.77	-1.7
2,395,339	-		DZA65_RS11270	0.77	-0.3
2,395,339	-		DZA65_RS11270	0.77	+0.3
2,395,339	-		DZA65_RS11270	0.77	+0.7
2,395,339	-		DZA65_RS11270	0.77	-0.9
2,395,339	-		DZA65_RS11270	0.77	-1.5
2,395,339	-		DZA65_RS11270	0.77	-2.9
2,395,557	-		DZA65_RS11270	0.86	-3.2
2,395,573	+		DZA65_RS11270	0.86	-1.7
2,395,779	+				-2.8
2,395,779	+				-0.8
2,395,780	-				-1.0
2,395,780	-				-2.5
2,395,780	-				-1.5
2,395,780	-				+0.1
2,395,782	+				+1.7
2,395,782	+				-1.9
2,395,782	+				-1.5
2,395,782	+				+0.7
2,395,783	-				+1.2
2,395,783	-				-1.0
2,395,783	-				-1.0
2,395,784	+				-0.3
2,395,784	+				+0.2
2,395,784	+				-0.3
2,395,784	+				-1.8
2,395,785	-				-1.9
2,395,785	-				-1.3
2,395,785	-				-3.0
2,395,785	-				-0.9
2,395,785	-				-1.7
2,395,785	-				-3.4
2,395,785	-				-1.3
2,395,785	-				-2.3
2,395,785	-				+1.0
2,395,785	-				-1.7
2,395,788	+				-3.3
2,395,788	+				-1.9
2,395,788	+				-1.3
2,395,788	+				-0.3
2,395,788	+				-0.9
2,395,788	+				+1.0
2,395,788	+				-2.3
2,395,788	+				-1.2
2,395,788	+				-1.9
2,395,788	+				-2.3
2,395,789	-				-1.3
2,395,789	-				-3.2
2,395,789	-				-1.3
2,395,789	-				-1.8
2,395,789	-				+0.4
2,395,789	-				-1.3
2,395,789	-				-0.2
2,395,789	-				+0.0
2,395,789	-				+0.7
2,395,789	-				+0.9
2,395,789	-				-0.9
2,395,801	+				-2.7
2,395,801	+				-1.2
2,395,802	-				-0.3
2,395,802	-				+3.0
2,395,836	+				-1.8
2,395,853	+				-1.2
2,395,958	-				+0.7
2,395,958	-				+0.5
2,395,981	+				-0.3
2,395,982	-				-0.8
2,396,033	+				-1.3
2,396,063	+				+0.4
2,396,069	+				+0.4
2,396,082	+				+0.2
2,396,082	+				+1.5
2,396,083	-				-0.3
2,396,083	-				-2.2
2,396,099	+				+1.3
2,396,100	-				-0.3
2,396,114	+				+0.1
2,396,115	-				-0.2
2,396,115	-				+0.9
2,396,115	-				-0.1
2,396,155	+				-0.9
2,396,155	+				+0.4
2,396,156	-				-0.3
2,396,156	-				-0.3
2,396,174	+				-0.5
2,396,187	-				-2.3
2,396,187	-				-0.9
2,396,192	+				+0.2
2,396,193	-				+0.6
2,396,193	-				+0.9
2,396,193	-				-0.2
2,396,263	+				-0.2
2,396,263	+				-1.3
2,396,263	+				-0.9
2,396,318	+				+1.0
2,396,318	+				+1.9
2,396,318	+				+0.9
2,396,319	-				+0.7
2,396,322	+				-1.3
2,396,322	+				+0.1
2,396,322	+				+0.2
2,396,322	+				+0.3
2,396,323	-				-2.8
2,396,323	-				-0.3
2,396,323	-				-0.3
2,396,323	-				-0.7
2,396,346	+				+0.2
2,396,347	-				-1.9
2,396,355	+				-0.6
2,396,417	+				-0.9
2,396,417	+				-0.6
2,396,492	+				-0.2
2,396,492	+				+2.1
2,396,506	+				-0.4
2,396,506	+				-0.7
2,396,506	+				+1.8
2,396,507	-				-0.4
2,396,507	-				+1.5
2,396,512	+				-0.6
2,396,513	-				-1.3
2,396,513	-				-1.2
2,396,563	+		DZA65_RS11275	0.14	-0.7
2,396,612	+		DZA65_RS11275	0.24	-2.7
2,396,613	-		DZA65_RS11275	0.25	+0.1