Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09725

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
2,050,838	-				-1.5
2,050,906	+				-2.1
2,050,963	+				-0.9
2,050,963	+		DZA65_RS09720	0.19	+0.0
2,050,963	+		DZA65_RS09720	0.19	+1.4
2,050,963	+		DZA65_RS09720	0.19	-0.7
2,050,963	+		DZA65_RS09720	0.19	-0.3
2,050,963	+		DZA65_RS09720	0.19	+0.7
2,050,964	-		DZA65_RS09720	0.19	+0.7
2,050,964	-		DZA65_RS09720	0.19	+2.6
2,050,977	+		DZA65_RS09720	0.21	-0.2
2,050,977	+		DZA65_RS09720	0.21	+0.3
2,050,977	+		DZA65_RS09720	0.21	-0.4
2,050,978	-		DZA65_RS09720	0.21	+0.3
2,050,978	-		DZA65_RS09720	0.21	-1.3
2,051,097	-		DZA65_RS09720	0.40	+1.7
2,051,097	-		DZA65_RS09720	0.40	-0.1
2,051,121	+		DZA65_RS09720	0.44	-1.3
2,051,122	-				+0.1
2,051,132	+		DZA65_RS09720	0.46	+1.6
2,051,147	-		DZA65_RS09720	0.48	+0.4
2,051,147	-		DZA65_RS09720	0.48	-0.7
2,051,147	-		DZA65_RS09720	0.48	+0.4
2,051,183	+		DZA65_RS09720	0.54	-0.9
2,051,183	+		DZA65_RS09720	0.54	-1.5
2,051,184	-		DZA65_RS09720	0.54	-0.3
2,051,184	-		DZA65_RS09720	0.54	+0.0
2,051,184	-		DZA65_RS09720	0.54	-1.9
2,051,184	-		DZA65_RS09720	0.54	-0.9
2,051,184	-		DZA65_RS09720	0.54	-0.7
2,051,199	+		DZA65_RS09720	0.57	+0.7
2,051,199	+		DZA65_RS09720	0.57	+0.1
2,051,199	+		DZA65_RS09720	0.57	-0.1
2,051,200	-		DZA65_RS09720	0.57	-0.3
2,051,200	-		DZA65_RS09720	0.57	-1.1
2,051,200	-		DZA65_RS09720	0.57	+0.3
2,051,200	-		DZA65_RS09720	0.57	+1.9
2,051,200	-		DZA65_RS09720	0.57	+0.1
2,051,218	+		DZA65_RS09720	0.60	-0.1
2,051,219	-				-0.5
2,051,219	-		DZA65_RS09720	0.60	+0.7
2,051,219	-		DZA65_RS09720	0.60	-0.3
2,051,236	+		DZA65_RS09720	0.63	+0.3
2,051,237	-		DZA65_RS09720	0.63	+0.2
2,051,237	-		DZA65_RS09720	0.63	-0.3
2,051,252	-		DZA65_RS09720	0.65	+0.4
2,051,325	+		DZA65_RS09720	0.77	-1.3
2,051,335	+		DZA65_RS09720	0.79	+0.0
2,051,335	+		DZA65_RS09720	0.79	-0.2
2,051,387	-		DZA65_RS09720	0.87	+1.1
2,051,458	-				-0.5
2,051,551	+				-1.9
2,051,556	-				-0.9
2,051,556	-				+0.0
2,051,570	+				+0.1
2,051,570	+				-0.4
2,051,570	+				+0.4
2,051,571	-				+0.8
2,051,571	-				-0.1
2,051,573	-				+0.6
2,051,573	-				+0.4
2,051,631	+				-0.2
2,051,632	-				+0.1
2,051,651	+				-2.3
2,051,652	-				-0.1
2,051,652	-				-0.9
2,051,652	-				+0.4
2,051,652	-				-0.9
2,051,657	+				-0.4
2,051,657	+				-0.7
2,051,660	-				-0.2
2,051,670	+				-0.1
2,051,671	-				+0.7
2,051,674	+				-0.3
2,051,699	-				-0.1
2,051,702	-				-0.4
2,051,708	+				-0.9
2,051,712	+				-0.5
2,051,731	+				+1.2
2,051,731	+				-0.4
2,051,731	+				-0.7
2,051,731	+				-0.3
2,051,731	+				-1.1
2,051,731	+				+0.7
2,051,731	+				-0.2
2,051,731	+				-1.1
2,051,731	+				+0.5
2,051,731	+				-0.7
2,051,731	+				-0.3
2,051,731	+				+0.4
2,051,732	-				-0.1
2,051,732	-				-0.2
2,051,732	-				+1.0
2,051,732	-				-0.4
2,051,732	-				-0.9
2,051,732	-				-0.4
2,051,732	-				+0.7
2,051,732	-				-0.9
2,051,732	-				+0.7
2,051,732	-				-0.4
2,051,732	-				-2.3
2,051,732	-				+1.2
2,051,733	+				+0.7
2,051,733	+				-0.7
2,051,733	+				+0.2
2,051,733	+				+1.1
2,051,733	+				+0.3
2,051,733	+				-0.6
2,051,733	+				-0.5
2,051,733	+				+0.2
2,051,734	-				-2.1
2,051,734	-				+0.9
2,051,734	-				-0.5
2,051,734	-				-0.3
2,051,737	+				-1.3
2,051,737	+				-0.3
2,051,737	+				+1.3
2,051,738	-				+0.0
2,051,738	-				+0.2
2,051,738	-				+1.1
2,051,738	-				-0.7
2,051,738	-				+0.9
2,051,743	-				-0.3
2,051,743	-				-0.4
2,051,753	+				-2.5
2,051,754	-				-0.3
2,051,755	+				-0.1
2,051,755	+				-0.1
2,051,755	+				-0.3
2,051,756	-				-1.9
2,051,756	-				+0.0
2,051,756	-				+0.9
2,051,756	-				+1.0
2,051,756	-				-0.3
2,051,756	-				+1.0
2,051,756	-				-1.3
2,051,756	-				-0.6
2,051,756	-				+1.7
2,051,756	-				-0.2
2,051,853	+		DZA65_RS09725	0.11	+0.0
2,051,853	+		DZA65_RS09725	0.11	-0.3
2,051,854	-				+0.1
2,051,884	+		DZA65_RS09725	0.15	+0.1
2,051,890	+		DZA65_RS09725	0.16	+0.0
2,051,890	+		DZA65_RS09725	0.16	+0.6
2,051,891	-		DZA65_RS09725	0.16	-1.2
2,051,927	+		DZA65_RS09725	0.20	+0.7
2,051,957	+		DZA65_RS09725	0.24	-1.0
2,051,957	+		DZA65_RS09725	0.24	+0.9
2,051,957	+		DZA65_RS09725	0.24	-0.9
2,051,957	+		DZA65_RS09725	0.24	+0.9
2,051,957	+		DZA65_RS09725	0.24	-2.3
2,051,957	+		DZA65_RS09725	0.24	+0.7
2,051,958	-		DZA65_RS09725	0.24	-1.3
2,051,958	-		DZA65_RS09725	0.24	-2.6
2,051,958	-		DZA65_RS09725	0.24	-0.2
2,052,023	+		DZA65_RS09725	0.32	+1.9
2,052,023	+		DZA65_RS09725	0.32	+0.1
2,052,023	+		DZA65_RS09725	0.32	+0.7
2,052,023	+		DZA65_RS09725	0.32	+0.2
2,052,024	-		DZA65_RS09725	0.32	-0.1
2,052,024	-		DZA65_RS09725	0.32	-0.1
2,052,074	-		DZA65_RS09725	0.38	+0.5
2,052,101	+		DZA65_RS09725	0.41	-0.2
2,052,101	+		DZA65_RS09725	0.41	-2.5
2,052,102	-		DZA65_RS09725	0.41	+0.3
2,052,262	+		DZA65_RS09725	0.60	-0.3
2,052,262	+		DZA65_RS09725	0.60	+0.4
2,052,323	-		DZA65_RS09725	0.67	-0.1
2,052,485	-		DZA65_RS09725	0.86	-0.7
2,052,509	+		DZA65_RS09725	0.89	+0.1
2,052,599	+				+1.7
2,052,600	-				-0.7
2,052,600	-				+0.3
2,052,600	-				+0.9
2,052,603	-				-0.6
2,052,610	+				+0.7
2,052,610	+				+1.4
2,052,664	-				-0.2
2,052,664	-				-0.9
2,052,664	-				-1.5
2,052,745	-				-0.4
2,052,751	+				-0.2
2,052,886	+		DZA65_RS09730	0.15	+0.0
2,052,886	+		DZA65_RS09730	0.15	-1.3
2,052,887	-		DZA65_RS09730	0.15	-0.6
2,052,889	+		DZA65_RS09730	0.15	-3.6
2,052,890	-		DZA65_RS09730	0.15	+1.5
2,052,890	-		DZA65_RS09730	0.15	+0.2
2,052,890	-		DZA65_RS09730	0.15	+0.3
2,052,890	-		DZA65_RS09730	0.15	-0.1
2,052,890	-		DZA65_RS09730	0.15	+0.8
2,053,025	+		DZA65_RS09730	0.29	+0.7
2,053,025	+		DZA65_RS09730	0.29	-0.1
2,053,025	+		DZA65_RS09730	0.29	-1.3
2,053,025	+		DZA65_RS09730	0.29	+0.4
2,053,025	+		DZA65_RS09730	0.29	+0.3
2,053,025	+		DZA65_RS09730	0.29	-0.0
2,053,026	-		DZA65_RS09730	0.29	-2.0
2,053,026	-		DZA65_RS09730	0.29	+0.2
2,053,026	-		DZA65_RS09730	0.29	-0.6
2,053,026	-		DZA65_RS09730	0.29	-0.9
2,053,026	-				-1.1
2,053,026	-		DZA65_RS09730	0.29	-2.1
2,053,026	-		DZA65_RS09730	0.29	-0.3
2,053,027	+		DZA65_RS09730	0.29	+0.3
2,053,284	+		DZA65_RS09730	0.54	-2.6
2,053,418	-		DZA65_RS09730	0.67	-0.9