Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS09440 and DZA65_RS09445 are separated by 68 nucleotides DZA65_RS09445 and DZA65_RS09450 are separated by 181 nucleotides DZA65_RS09450 and DZA65_RS09455 are separated by 78 nucleotides
DZA65_RS09440: DZA65_RS09440 - IS110 family transposase, at 1,985,711 to 1,986,715
_RS09440
DZA65_RS09445: DZA65_RS09445 - response regulator, at 1,986,784 to 1,986,957
_RS09445
DZA65_RS09450: DZA65_RS09450 - tRNA-Pro, at 1,987,139 to 1,987,215
_RS09450
DZA65_RS09455: DZA65_RS09455 - DUF3413 domain-containing protein, at 1,987,294 to 1,989,066
_RS09455
Position (kb) 1986
1987 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1986.797 kb on - strand at 1986.797 kb on - strand at 1986.807 kb on - strand, within DZA65_RS09445 at 1986.829 kb on + strand, within DZA65_RS09445 at 1986.829 kb on + strand, within DZA65_RS09445 at 1986.830 kb on - strand, within DZA65_RS09445 at 1986.850 kb on + strand, within DZA65_RS09445 at 1986.850 kb on + strand, within DZA65_RS09445 at 1986.851 kb on - strand, within DZA65_RS09445 at 1986.851 kb on - strand, within DZA65_RS09445 at 1986.872 kb on + strand, within DZA65_RS09445 at 1986.873 kb on - strand, within DZA65_RS09445 at 1986.874 kb on + strand, within DZA65_RS09445 at 1986.874 kb on + strand, within DZA65_RS09445 at 1986.874 kb on + strand, within DZA65_RS09445 at 1986.874 kb on + strand, within DZA65_RS09445 at 1986.874 kb on + strand, within DZA65_RS09445 at 1986.874 kb on + strand, within DZA65_RS09445 at 1986.874 kb on + strand, within DZA65_RS09445 at 1986.874 kb on + strand, within DZA65_RS09445 at 1986.874 kb on + strand, within DZA65_RS09445 at 1986.874 kb on + strand, within DZA65_RS09445 at 1986.874 kb on + strand, within DZA65_RS09445 at 1986.875 kb on - strand, within DZA65_RS09445 at 1986.875 kb on - strand, within DZA65_RS09445 at 1986.875 kb on - strand, within DZA65_RS09445 at 1986.875 kb on - strand, within DZA65_RS09445 at 1986.875 kb on - strand, within DZA65_RS09445 at 1986.881 kb on - strand, within DZA65_RS09445 at 1986.881 kb on - strand, within DZA65_RS09445 at 1986.897 kb on + strand, within DZA65_RS09445 at 1986.897 kb on + strand, within DZA65_RS09445 at 1986.898 kb on - strand, within DZA65_RS09445 at 1986.901 kb on - strand, within DZA65_RS09445 at 1986.945 kb on + strand at 1986.945 kb on + strand at 1986.998 kb on + strand at 1986.998 kb on + strand at 1986.998 kb on + strand at 1986.998 kb on + strand at 1986.999 kb on - strand at 1986.999 kb on - strand at 1986.999 kb on - strand at 1987.008 kb on + strand at 1987.009 kb on - strand at 1987.009 kb on - strand at 1987.030 kb on - strand at 1987.030 kb on - strand at 1987.050 kb on + strand at 1987.051 kb on - strand at 1987.113 kb on + strand at 1987.120 kb on + strand at 1987.124 kb on + strand at 1987.125 kb on - strand at 1987.125 kb on - strand at 1987.125 kb on - strand at 1987.135 kb on + strand at 1987.135 kb on + strand at 1987.207 kb on + strand, within DZA65_RS09450 at 1987.221 kb on - strand at 1987.230 kb on + strand at 1987.231 kb on - strand at 1987.232 kb on + strand at 1987.232 kb on + strand at 1987.232 kb on + strand at 1987.232 kb on + strand at 1987.233 kb on - strand at 1987.235 kb on + strand at 1987.288 kb on - strand at 1987.296 kb on - strand at 1987.296 kb on - strand at 1987.296 kb on - strand at 1987.305 kb on + strand at 1987.340 kb on - strand at 1987.422 kb on + strand at 1987.422 kb on + strand at 1987.423 kb on - strand at 1987.521 kb on - strand, within DZA65_RS09455
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 1,986,797 - +1.3 1,986,797 - +0.0 1,986,807 - DZA65_RS09445 0.13 -0.9 1,986,829 + DZA65_RS09445 0.26 +1.3 1,986,829 + DZA65_RS09445 0.26 -0.0 1,986,830 - DZA65_RS09445 0.26 -1.6 1,986,850 + DZA65_RS09445 0.38 -0.9 1,986,850 + DZA65_RS09445 0.38 -0.0 1,986,851 - DZA65_RS09445 0.39 -0.0 1,986,851 - DZA65_RS09445 0.39 +0.8 1,986,872 + DZA65_RS09445 0.51 +0.9 1,986,873 - DZA65_RS09445 0.51 +0.4 1,986,874 + DZA65_RS09445 0.52 -2.8 1,986,874 + DZA65_RS09445 0.52 +0.7 1,986,874 + DZA65_RS09445 0.52 -1.2 1,986,874 + DZA65_RS09445 0.52 -0.7 1,986,874 + DZA65_RS09445 0.52 -0.6 1,986,874 + DZA65_RS09445 0.52 +0.4 1,986,874 + DZA65_RS09445 0.52 +1.1 1,986,874 + DZA65_RS09445 0.52 +2.1 1,986,874 + DZA65_RS09445 0.52 -0.8 1,986,874 + DZA65_RS09445 0.52 +1.0 1,986,874 + DZA65_RS09445 0.52 -1.9 1,986,875 - DZA65_RS09445 0.52 -0.3 1,986,875 - DZA65_RS09445 0.52 +1.1 1,986,875 - DZA65_RS09445 0.52 +0.9 1,986,875 - DZA65_RS09445 0.52 +0.7 1,986,875 - DZA65_RS09445 0.52 -1.3 1,986,881 - DZA65_RS09445 0.56 -0.5 1,986,881 - DZA65_RS09445 0.56 -0.1 1,986,897 + DZA65_RS09445 0.65 +0.4 1,986,897 + DZA65_RS09445 0.65 -1.5 1,986,898 - DZA65_RS09445 0.66 -0.5 1,986,901 - DZA65_RS09445 0.67 -3.2 1,986,945 + +1.4 1,986,945 + -1.0 1,986,998 + -0.1 1,986,998 + +1.9 1,986,998 + -0.2 1,986,998 + +0.7 1,986,999 - -0.3 1,986,999 - -0.1 1,986,999 - -1.3 1,987,008 + +1.3 1,987,009 - -0.9 1,987,009 - -0.2 1,987,030 - +0.3 1,987,030 - +0.2 1,987,050 + -0.3 1,987,051 - -0.3 1,987,113 + +0.7 1,987,120 + +1.4 1,987,124 + -0.8 1,987,125 - +0.3 1,987,125 - +0.1 1,987,125 - -0.9 1,987,135 + +0.1 1,987,135 + -1.6 1,987,207 + DZA65_RS09450 0.88 -0.9 1,987,221 - -0.9 1,987,230 + -2.3 1,987,231 - -0.9 1,987,232 + +0.7 1,987,232 + -1.6 1,987,232 + -1.6 1,987,232 + -0.9 1,987,233 - -0.3 1,987,235 + -0.1 1,987,288 - +0.7 1,987,296 - -0.4 1,987,296 - -0.0 1,987,296 - +0.7 1,987,305 + +0.7 1,987,340 - -0.9 1,987,422 + -0.3 1,987,422 + -0.4 1,987,423 - -0.3 1,987,521 - DZA65_RS09455 0.13 -1.6
Or see this region's nucleotide sequence