Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08725

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
1,846,106	+		DZA65_RS08715	0.66	+2.2
1,846,106	+		DZA65_RS08715	0.66	+1.1
1,846,107	-		DZA65_RS08715	0.66	-2.1
1,846,107	-		DZA65_RS08715	0.66	+0.9
1,846,121	+		DZA65_RS08715	0.68	-0.4
1,846,121	+		DZA65_RS08715	0.68	-2.4
1,846,121	+		DZA65_RS08715	0.68	+0.4
1,846,190	+		DZA65_RS08715	0.77	-1.0
1,846,190	+		DZA65_RS08715	0.77	-1.4
1,846,209	-		DZA65_RS08715	0.79	+1.8
1,846,209	-		DZA65_RS08715	0.79	-0.7
1,846,211	+		DZA65_RS08715	0.80	-0.1
1,846,211	+		DZA65_RS08715	0.80	+0.4
1,846,211	+		DZA65_RS08715	0.80	-1.7
1,846,212	-		DZA65_RS08715	0.80	+1.9
1,846,212	-		DZA65_RS08715	0.80	-2.7
1,846,220	+		DZA65_RS08715	0.81	-1.8
1,846,220	+		DZA65_RS08715	0.81	+0.9
1,846,221	-		DZA65_RS08715	0.81	-1.2
1,846,221	-		DZA65_RS08715	0.81	-2.7
1,846,221	-		DZA65_RS08715	0.81	-0.2
1,846,221	-		DZA65_RS08715	0.81	-1.4
1,846,247	+		DZA65_RS08715	0.84	+0.8
1,846,247	+		DZA65_RS08715	0.84	+1.6
1,846,248	-		DZA65_RS08715	0.85	-1.2
1,846,248	-		DZA65_RS08715	0.85	+0.0
1,846,323	+				+0.0
1,846,324	-				+0.1
1,846,378	+				-0.2
1,846,378	+				+0.3
1,846,378	+				+0.0
1,846,379	-				+0.7
1,846,437	+				-1.1
1,846,437	+				+0.9
1,846,515	+				+1.1
1,846,515	+				-0.4
1,846,516	-				+0.3
1,846,516	-				+1.6
1,846,516	-				-2.8
1,846,519	+				+1.0
1,846,682	+		DZA65_RS08720	0.18	+1.3
1,846,682	+		DZA65_RS08720	0.18	+0.9
1,846,683	-		DZA65_RS08720	0.19	+0.3
1,846,733	-		DZA65_RS08720	0.29	+0.4
1,846,736	+		DZA65_RS08720	0.30	-0.2
1,846,736	+		DZA65_RS08720	0.30	-1.2
1,846,736	+		DZA65_RS08720	0.30	-0.2
1,846,736	+		DZA65_RS08720	0.30	-0.8
1,846,736	+		DZA65_RS08720	0.30	+0.1
1,846,736	+		DZA65_RS08720	0.30	-1.1
1,846,737	-		DZA65_RS08720	0.30	-0.2
1,846,737	-		DZA65_RS08720	0.30	+1.0
1,846,737	-		DZA65_RS08720	0.30	+0.4
1,846,737	-		DZA65_RS08720	0.30	+1.5
1,846,737	-		DZA65_RS08720	0.30	+0.4
1,846,738	+		DZA65_RS08720	0.30	-0.2
1,847,028	+				+0.2
1,847,029	-				+0.4
1,847,029	-				-0.8
1,847,037	-				+1.1
1,847,037	-				-0.4
1,847,054	-				-0.2
1,847,056	+				-1.6
1,847,057	-				+1.3
1,847,059	+				-0.9
1,847,060	-				-1.5
1,847,060	-				-0.5
1,847,063	+				+0.2
1,847,063	+				-0.4
1,847,063	+				-0.5
1,847,063	+				-1.2
1,847,063	+				-0.2
1,847,064	-				+0.2
1,847,064	-				-1.2
1,847,064	-				+0.7
1,847,064	-				-0.1
1,847,064	-				+0.0
1,847,130	+				+0.4
1,847,130	+				+1.2
1,847,130	+				+0.4
1,847,131	-				+0.8
1,847,131	-				-0.8
1,847,184	+				+0.0
1,847,184	+				-1.1
1,847,184	+				+0.5
1,847,184	+				-0.6
1,847,185	-				+0.0
1,847,188	-				+0.8
1,847,196	+				-0.6
1,847,197	-		DZA65_RS08725	0.10	-2.1
1,847,217	-		DZA65_RS08725	0.12	-1.4
1,847,230	-		DZA65_RS08725	0.13	+0.2
1,847,307	+		DZA65_RS08725	0.19	+0.4
1,847,307	+		DZA65_RS08725	0.19	+2.0
1,847,307	+		DZA65_RS08725	0.19	-1.0
1,847,307	+		DZA65_RS08725	0.19	+0.8
1,847,307	+		DZA65_RS08725	0.19	+0.8
1,847,307	+		DZA65_RS08725	0.19	-1.0
1,847,308	-		DZA65_RS08725	0.19	+1.1
1,847,308	-		DZA65_RS08725	0.19	-1.1
1,847,308	-		DZA65_RS08725	0.19	-2.6
1,847,308	-		DZA65_RS08725	0.19	+0.8
1,847,311	+		DZA65_RS08725	0.20	-1.1
1,847,311	+				+1.1
1,847,311	+		DZA65_RS08725	0.20	+0.4
1,847,312	-		DZA65_RS08725	0.20	+0.6
1,847,312	-		DZA65_RS08725	0.20	-0.9
1,847,418	+		DZA65_RS08725	0.29	-1.2
1,847,418	+		DZA65_RS08725	0.29	-1.1
1,847,419	-		DZA65_RS08725	0.29	+0.3
1,847,419	-		DZA65_RS08725	0.29	+0.3
1,847,419	-		DZA65_RS08725	0.29	-0.3
1,847,419	-		DZA65_RS08725	0.29	+1.0
1,847,420	+		DZA65_RS08725	0.29	+0.1
1,847,420	+		DZA65_RS08725	0.29	-2.1
1,847,421	-		DZA65_RS08725	0.29	+1.3
1,847,421	-		DZA65_RS08725	0.29	-0.4
1,847,432	+		DZA65_RS08725	0.30	-0.2
1,847,436	+		DZA65_RS08725	0.30	+0.3
1,847,436	+		DZA65_RS08725	0.30	+1.3
1,847,437	-		DZA65_RS08725	0.30	-0.7
1,847,437	-		DZA65_RS08725	0.30	-1.8
1,847,437	-		DZA65_RS08725	0.30	+0.0
1,847,437	-		DZA65_RS08725	0.30	-0.9
1,847,490	+		DZA65_RS08725	0.35	-0.7
1,847,490	+		DZA65_RS08725	0.35	+0.3
1,847,490	+		DZA65_RS08725	0.35	+0.2
1,847,490	+		DZA65_RS08725	0.35	+0.8
1,847,490	+		DZA65_RS08725	0.35	-0.3
1,847,491	-		DZA65_RS08725	0.35	-1.3
1,847,492	+				+0.8
1,847,493	-		DZA65_RS08725	0.35	+0.8
1,847,493	-		DZA65_RS08725	0.35	-1.2
1,847,630	+		DZA65_RS08725	0.47	+1.2
1,847,633	+		DZA65_RS08725	0.47	-1.2
1,847,633	+		DZA65_RS08725	0.47	-0.4
1,847,634	-		DZA65_RS08725	0.47	-0.2
1,847,634	-		DZA65_RS08725	0.47	-0.6
1,847,634	-		DZA65_RS08725	0.47	-0.1
1,847,634	-		DZA65_RS08725	0.47	-0.1
1,847,687	+		DZA65_RS08725	0.52	-0.2
1,847,687	+		DZA65_RS08725	0.52	+0.3
1,847,688	-		DZA65_RS08725	0.52	-3.3
1,847,688	-		DZA65_RS08725	0.52	-0.1
1,847,691	+		DZA65_RS08725	0.52	+0.5
1,847,692	-		DZA65_RS08725	0.52	-1.4
1,847,692	-		DZA65_RS08725	0.52	-0.6
1,847,692	-		DZA65_RS08725	0.52	-0.9
1,847,692	-		DZA65_RS08725	0.52	-0.2
1,847,736	+		DZA65_RS08725	0.56	-1.2
1,847,736	+		DZA65_RS08725	0.56	+0.4
1,847,736	+		DZA65_RS08725	0.56	-1.8
1,847,798	+		DZA65_RS08725	0.61	-0.7
1,847,898	+		DZA65_RS08725	0.69	-1.1
1,847,898	+		DZA65_RS08725	0.69	-1.2
1,847,898	+		DZA65_RS08725	0.69	+1.3
1,847,898	+		DZA65_RS08725	0.69	+1.4
1,847,898	+		DZA65_RS08725	0.69	+1.1
1,847,898	+		DZA65_RS08725	0.69	+0.7
1,847,898	+		DZA65_RS08725	0.69	+0.2
1,847,898	+		DZA65_RS08725	0.69	-0.4
1,847,898	+		DZA65_RS08725	0.69	+2.1
1,847,898	+		DZA65_RS08725	0.69	-0.1
1,847,898	+		DZA65_RS08725	0.69	+0.4
1,847,898	+		DZA65_RS08725	0.69	+0.3
1,847,898	+		DZA65_RS08725	0.69	-1.6
1,847,899	-		DZA65_RS08725	0.70	-1.2
1,847,899	-		DZA65_RS08725	0.70	+1.1
1,847,899	-				+0.4
1,847,899	-		DZA65_RS08725	0.70	-1.1
1,847,899	-		DZA65_RS08725	0.70	-0.6
1,847,899	-		DZA65_RS08725	0.70	-0.8
1,847,899	-		DZA65_RS08725	0.70	-1.4
1,847,899	-		DZA65_RS08725	0.70	+0.4
1,847,899	-				-0.1
1,847,899	-		DZA65_RS08725	0.70	-0.1
1,847,899	-		DZA65_RS08725	0.70	+0.2
1,847,899	-		DZA65_RS08725	0.70	-1.2
1,847,899	-		DZA65_RS08725	0.70	-1.6
1,847,899	-		DZA65_RS08725	0.70	+0.2
1,847,914	+		DZA65_RS08725	0.71	-2.1
1,847,915	-		DZA65_RS08725	0.71	-0.4
1,847,915	-		DZA65_RS08725	0.71	-1.4
1,847,915	-		DZA65_RS08725	0.71	+0.6
1,847,915	-		DZA65_RS08725	0.71	-0.2
1,847,915	-		DZA65_RS08725	0.71	+1.6
1,847,915	-		DZA65_RS08725	0.71	-1.1
1,847,917	-		DZA65_RS08725	0.71	-1.2
1,847,929	+		DZA65_RS08725	0.72	+2.3
1,847,929	+		DZA65_RS08725	0.72	+1.3
1,847,929	+		DZA65_RS08725	0.72	-0.8
1,847,929	+		DZA65_RS08725	0.72	-0.4
1,848,002	+		DZA65_RS08725	0.78	-0.8
1,848,002	+		DZA65_RS08725	0.78	-0.6
1,848,003	-		DZA65_RS08725	0.78	+0.2
1,848,110	+		DZA65_RS08725	0.87	+0.3
1,848,111	-				-1.8
1,848,111	-		DZA65_RS08725	0.88	+0.8
1,848,111	-		DZA65_RS08725	0.88	-0.2
1,848,111	-		DZA65_RS08725	0.88	-1.1
1,848,172	-				+1.5
1,848,172	-				-1.6
1,848,198	-				+2.1
1,848,256	-				-0.2
1,848,277	-				+0.8
1,848,288	+				+0.8
1,848,289	-				+1.3
1,848,289	-				-0.5
1,848,289	-				-0.6
1,848,289	-				+0.3
1,848,432	+		DZA65_RS08730	0.11	-0.8
1,848,433	-		DZA65_RS08730	0.11	-0.2
1,848,433	-		DZA65_RS08730	0.11	-1.6
1,848,433	-		DZA65_RS08730	0.11	-0.2
1,848,433	-		DZA65_RS08730	0.11	-0.6
1,848,433	-		DZA65_RS08730	0.11	+0.2
1,848,433	-		DZA65_RS08730	0.11	+0.0
1,848,599	+		DZA65_RS08730	0.22	-2.4
1,848,600	-		DZA65_RS08730	0.22	-0.2
1,848,626	-		DZA65_RS08730	0.23	+1.8
1,848,760	+		DZA65_RS08730	0.32	-0.4
1,848,760	+		DZA65_RS08730	0.32	-0.2
1,848,760	+		DZA65_RS08730	0.32	+0.4
1,848,760	+		DZA65_RS08730	0.32	+2.1
1,848,760	+		DZA65_RS08730	0.32	+0.5
1,848,760	+		DZA65_RS08730	0.32	-1.3
1,848,761	-		DZA65_RS08730	0.32	+0.4
1,848,761	-		DZA65_RS08730	0.32	-0.4
1,848,761	-		DZA65_RS08730	0.32	-1.0
1,848,761	-		DZA65_RS08730	0.32	-2.2
1,848,761	-		DZA65_RS08730	0.32	-0.5
1,848,761	-		DZA65_RS08730	0.32	-0.2
1,848,761	-		DZA65_RS08730	0.32	-0.6
1,848,781	+		DZA65_RS08730	0.34	-1.1
1,848,782	-		DZA65_RS08730	0.34	+0.3
1,848,874	+		DZA65_RS08730	0.40	+0.5
1,848,874	+		DZA65_RS08730	0.40	+0.5
1,848,874	+		DZA65_RS08730	0.40	-0.8
1,848,874	+		DZA65_RS08730	0.40	+0.7
1,848,875	-		DZA65_RS08730	0.40	-0.7
1,848,875	-		DZA65_RS08730	0.40	+0.8
1,848,875	-		DZA65_RS08730	0.40	+1.0
1,848,875	-		DZA65_RS08730	0.40	+0.0
1,849,014	+		DZA65_RS08730	0.49	-0.2
1,849,014	+		DZA65_RS08730	0.49	+1.0
1,849,168	+		DZA65_RS08730	0.59	+1.5
1,849,214	+		DZA65_RS08730	0.62	-2.1
1,849,227	+		DZA65_RS08730	0.63	+0.2