Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04195 and DZA65_RS04205 are separated by 545 nucleotides DZA65_RS04205 and DZA65_RS04215 are separated by 587 nucleotides
DZA65_RS04195: DZA65_RS04195 - hypothetical protein, at 877,964 to 879,616
_RS04195
DZA65_RS04205: DZA65_RS04205 - zinc ribbon domain-containing protein, at 880,162 to 880,665
_RS04205
DZA65_RS04215: DZA65_RS04215 - SsrA-binding protein SmpB, at 881,253 to 881,735
_RS04215
Position (kb) 880
881 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 879.203 kb on - strand, within DZA65_RS04195 at 879.281 kb on + strand, within DZA65_RS04195 at 879.281 kb on + strand, within DZA65_RS04195 at 879.281 kb on + strand, within DZA65_RS04195 at 879.281 kb on + strand, within DZA65_RS04195 at 879.282 kb on - strand, within DZA65_RS04195 at 879.283 kb on + strand, within DZA65_RS04195 at 879.283 kb on + strand, within DZA65_RS04195 at 879.283 kb on + strand, within DZA65_RS04195 at 879.283 kb on + strand, within DZA65_RS04195 at 879.283 kb on + strand, within DZA65_RS04195 at 879.283 kb on + strand, within DZA65_RS04195 at 879.283 kb on + strand, within DZA65_RS04195 at 879.284 kb on - strand, within DZA65_RS04195 at 879.284 kb on - strand, within DZA65_RS04195 at 879.284 kb on - strand, within DZA65_RS04195 at 879.284 kb on - strand at 879.284 kb on - strand, within DZA65_RS04195 at 879.284 kb on - strand, within DZA65_RS04195 at 879.284 kb on - strand, within DZA65_RS04195 at 879.284 kb on - strand, within DZA65_RS04195 at 879.308 kb on - strand, within DZA65_RS04195 at 879.308 kb on - strand, within DZA65_RS04195 at 879.308 kb on - strand, within DZA65_RS04195 at 879.308 kb on - strand, within DZA65_RS04195 at 879.342 kb on + strand, within DZA65_RS04195 at 879.342 kb on + strand, within DZA65_RS04195 at 879.342 kb on + strand, within DZA65_RS04195 at 879.342 kb on + strand, within DZA65_RS04195 at 879.343 kb on - strand, within DZA65_RS04195 at 879.343 kb on - strand, within DZA65_RS04195 at 879.343 kb on - strand, within DZA65_RS04195 at 879.343 kb on - strand, within DZA65_RS04195 at 879.366 kb on + strand, within DZA65_RS04195 at 879.367 kb on - strand at 879.367 kb on - strand, within DZA65_RS04195 at 879.540 kb on + strand at 879.541 kb on - strand at 879.555 kb on + strand at 879.555 kb on + strand at 879.556 kb on - strand at 879.556 kb on - strand at 879.556 kb on - strand at 879.596 kb on + strand at 879.596 kb on + strand at 879.596 kb on + strand at 879.596 kb on + strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.597 kb on - strand at 879.606 kb on + strand at 879.629 kb on + strand at 879.629 kb on + strand at 879.630 kb on - strand at 879.657 kb on + strand at 879.657 kb on + strand at 879.676 kb on + strand at 879.687 kb on + strand at 879.688 kb on - strand at 879.688 kb on - strand at 879.747 kb on - strand at 879.807 kb on - strand at 879.807 kb on - strand at 879.863 kb on - strand at 879.872 kb on - strand at 879.991 kb on - strand at 880.164 kb on - strand at 880.164 kb on - strand at 880.204 kb on - strand at 880.217 kb on + strand, within DZA65_RS04205 at 880.217 kb on + strand, within DZA65_RS04205 at 880.229 kb on + strand, within DZA65_RS04205 at 880.229 kb on + strand, within DZA65_RS04205 at 880.229 kb on + strand, within DZA65_RS04205 at 880.230 kb on - strand, within DZA65_RS04205 at 880.230 kb on - strand, within DZA65_RS04205 at 880.230 kb on - strand, within DZA65_RS04205 at 880.230 kb on - strand, within DZA65_RS04205 at 880.230 kb on - strand, within DZA65_RS04205 at 880.230 kb on - strand, within DZA65_RS04205 at 880.230 kb on - strand, within DZA65_RS04205 at 880.230 kb on - strand, within DZA65_RS04205 at 880.367 kb on + strand, within DZA65_RS04205 at 880.367 kb on + strand, within DZA65_RS04205 at 880.368 kb on - strand, within DZA65_RS04205 at 880.384 kb on + strand, within DZA65_RS04205 at 880.516 kb on + strand, within DZA65_RS04205 at 880.517 kb on - strand, within DZA65_RS04205 at 880.519 kb on - strand, within DZA65_RS04205 at 880.535 kb on - strand, within DZA65_RS04205 at 880.578 kb on + strand, within DZA65_RS04205 at 880.579 kb on - strand, within DZA65_RS04205 at 880.579 kb on - strand, within DZA65_RS04205 at 880.581 kb on + strand, within DZA65_RS04205 at 880.581 kb on + strand, within DZA65_RS04205 at 880.581 kb on + strand, within DZA65_RS04205 at 880.582 kb on - strand, within DZA65_RS04205 at 880.627 kb on + strand at 880.627 kb on + strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.638 kb on + strand at 880.677 kb on + strand at 880.678 kb on - strand at 880.678 kb on - strand at 880.695 kb on + strand at 880.695 kb on + strand at 880.696 kb on - strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.700 kb on - strand at 880.700 kb on - strand at 880.700 kb on - strand at 880.700 kb on - strand at 880.703 kb on - strand at 880.725 kb on - strand at 880.742 kb on + strand at 880.742 kb on + strand at 880.743 kb on - strand at 880.818 kb on + strand at 880.877 kb on - strand at 880.885 kb on - strand at 880.896 kb on + strand at 880.897 kb on - strand at 881.219 kb on - strand at 881.220 kb on + strand at 881.220 kb on + strand at 881.221 kb on - strand at 881.239 kb on + strand at 881.240 kb on - strand at 881.244 kb on + strand at 881.245 kb on - strand at 881.245 kb on - strand at 881.245 kb on - strand at 881.245 kb on - strand at 881.245 kb on - strand at 881.410 kb on + strand, within DZA65_RS04215 at 881.410 kb on + strand, within DZA65_RS04215 at 881.411 kb on - strand, within DZA65_RS04215 at 881.471 kb on + strand, within DZA65_RS04215 at 881.572 kb on + strand, within DZA65_RS04215 at 881.572 kb on + strand, within DZA65_RS04215 at 881.573 kb on - strand, within DZA65_RS04215 at 881.573 kb on - strand, within DZA65_RS04215
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 879,203 - DZA65_RS04195 0.75 +1.0 879,281 + DZA65_RS04195 0.80 -1.0 879,281 + DZA65_RS04195 0.80 -0.5 879,281 + DZA65_RS04195 0.80 -1.1 879,281 + DZA65_RS04195 0.80 -1.5 879,282 - DZA65_RS04195 0.80 -3.9 879,283 + DZA65_RS04195 0.80 +0.8 879,283 + DZA65_RS04195 0.80 -1.2 879,283 + DZA65_RS04195 0.80 +0.8 879,283 + DZA65_RS04195 0.80 -0.8 879,283 + DZA65_RS04195 0.80 +0.4 879,283 + DZA65_RS04195 0.80 -2.5 879,283 + DZA65_RS04195 0.80 +0.0 879,284 - DZA65_RS04195 0.80 -0.7 879,284 - DZA65_RS04195 0.80 -0.9 879,284 - DZA65_RS04195 0.80 -1.3 879,284 - +1.0 879,284 - DZA65_RS04195 0.80 -1.8 879,284 - DZA65_RS04195 0.80 -2.3 879,284 - DZA65_RS04195 0.80 -1.0 879,284 - DZA65_RS04195 0.80 -0.7 879,308 - DZA65_RS04195 0.81 +0.0 879,308 - DZA65_RS04195 0.81 +0.3 879,308 - DZA65_RS04195 0.81 +1.0 879,308 - DZA65_RS04195 0.81 -1.5 879,342 + DZA65_RS04195 0.83 -1.5 879,342 + DZA65_RS04195 0.83 -0.9 879,342 + DZA65_RS04195 0.83 -0.8 879,342 + DZA65_RS04195 0.83 +0.3 879,343 - DZA65_RS04195 0.83 -0.3 879,343 - DZA65_RS04195 0.83 +0.0 879,343 - DZA65_RS04195 0.83 -2.1 879,343 - DZA65_RS04195 0.83 -0.0 879,366 + DZA65_RS04195 0.85 -0.3 879,367 - -0.5 879,367 - DZA65_RS04195 0.85 -0.3 879,540 + +0.6 879,541 - -1.3 879,555 + -0.1 879,555 + -1.2 879,556 - -0.7 879,556 - +1.6 879,556 - -0.6 879,596 + +0.0 879,596 + -1.3 879,596 + -1.3 879,596 + -0.2 879,597 - +0.5 879,597 - -1.1 879,597 - -0.1 879,597 - -0.5 879,597 - -1.0 879,597 - -1.0 879,597 - -0.5 879,597 - +0.7 879,597 - -1.5 879,597 - +0.2 879,597 - +1.3 879,606 + -1.7 879,629 + +0.2 879,629 + -0.8 879,630 - -1.3 879,657 + -2.3 879,657 + +0.6 879,676 + -0.3 879,687 + +0.3 879,688 - -0.9 879,688 - -2.3 879,747 - -0.3 879,807 - -1.0 879,807 - -1.8 879,863 - -1.2 879,872 - -0.8 879,991 - -2.1 880,164 - -1.3 880,164 - +0.0 880,204 - -0.8 880,217 + DZA65_RS04205 0.11 -0.1 880,217 + DZA65_RS04205 0.11 +0.3 880,229 + DZA65_RS04205 0.13 +1.0 880,229 + DZA65_RS04205 0.13 +0.9 880,229 + DZA65_RS04205 0.13 +0.4 880,230 - DZA65_RS04205 0.13 -1.0 880,230 - DZA65_RS04205 0.13 -1.9 880,230 - DZA65_RS04205 0.13 +0.0 880,230 - DZA65_RS04205 0.13 -1.5 880,230 - DZA65_RS04205 0.13 -0.8 880,230 - DZA65_RS04205 0.13 +0.0 880,230 - DZA65_RS04205 0.13 -0.5 880,230 - DZA65_RS04205 0.13 -0.4 880,367 + DZA65_RS04205 0.41 -0.2 880,367 + DZA65_RS04205 0.41 +0.3 880,368 - DZA65_RS04205 0.41 -1.0 880,384 + DZA65_RS04205 0.44 -0.9 880,516 + DZA65_RS04205 0.70 -0.3 880,517 - DZA65_RS04205 0.70 -2.3 880,519 - DZA65_RS04205 0.71 +0.7 880,535 - DZA65_RS04205 0.74 -1.1 880,578 + DZA65_RS04205 0.83 +0.6 880,579 - DZA65_RS04205 0.83 -1.8 880,579 - DZA65_RS04205 0.83 -0.1 880,581 + DZA65_RS04205 0.83 -3.1 880,581 + DZA65_RS04205 0.83 +0.3 880,581 + DZA65_RS04205 0.83 +0.0 880,582 - DZA65_RS04205 0.83 +0.5 880,627 + -0.5 880,627 + +0.4 880,628 - -0.8 880,628 - +1.5 880,628 - -0.4 880,628 - -1.3 880,628 - -1.1 880,628 - +0.7 880,638 + +0.0 880,677 + +0.0 880,678 - -0.8 880,678 - -1.4 880,695 + +0.8 880,695 + -0.3 880,696 - -1.0 880,699 + +0.6 880,699 + -0.1 880,699 + +0.6 880,699 + -1.3 880,699 + +0.4 880,699 + +0.8 880,700 - +0.2 880,700 - -0.8 880,700 - -0.7 880,700 - -0.1 880,703 - -1.1 880,725 - +0.6 880,742 + -2.8 880,742 + +0.6 880,743 - -0.7 880,818 + -0.3 880,877 - -2.3 880,885 - +0.8 880,896 + -1.0 880,897 - +0.6 881,219 - -1.0 881,220 + -1.8 881,220 + -2.2 881,221 - +1.6 881,239 + -0.1 881,240 - -1.5 881,244 + +1.0 881,245 - +0.0 881,245 - -1.0 881,245 - +2.0 881,245 - +0.7 881,245 - +1.3 881,410 + DZA65_RS04215 0.33 -1.5 881,410 + DZA65_RS04215 0.33 -2.4 881,411 - DZA65_RS04215 0.33 -1.0 881,471 + DZA65_RS04215 0.45 -1.0 881,572 + DZA65_RS04215 0.66 -1.0 881,572 + DZA65_RS04215 0.66 -1.4 881,573 - DZA65_RS04215 0.66 -0.5 881,573 - DZA65_RS04215 0.66 +2.6
Or see this region's nucleotide sequence