Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS03650

Experiment: Stem-Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS03645 and DZA65_RS03650 overlap by 1 nucleotidesDZA65_RS03650 and DZA65_RS03655 are separated by 10 nucleotidesDZA65_RS03655 and DZA65_RS03660 overlap by 11 nucleotides DZA65_RS03645: DZA65_RS03645 - ABC transporter ATP-binding protein, at 767,608 to 768,693 _RS03645 DZA65_RS03650: DZA65_RS03650 - phosphodiesterase, at 768,693 to 769,514 _RS03650 DZA65_RS03655: DZA65_RS03655 - carbohydrate ABC transporter permease, at 769,525 to 770,412 _RS03655 DZA65_RS03660: DZA65_RS03660 - sugar ABC transporter permease, at 770,402 to 771,292 _RS03660 Position (kb) 768 769 770Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 767.738 kb on + strand, within DZA65_RS03645at 767.743 kb on + strand, within DZA65_RS03645at 767.743 kb on + strand, within DZA65_RS03645at 767.743 kb on + strand, within DZA65_RS03645at 767.743 kb on + strand, within DZA65_RS03645at 767.743 kb on + strand, within DZA65_RS03645at 767.743 kb on + strand, within DZA65_RS03645at 767.744 kb on - strand, within DZA65_RS03645at 767.744 kb on - strand, within DZA65_RS03645at 767.744 kb on - strand, within DZA65_RS03645at 767.744 kb on - strand, within DZA65_RS03645at 767.744 kb on - strand, within DZA65_RS03645at 767.777 kb on + strand, within DZA65_RS03645at 767.777 kb on + strand, within DZA65_RS03645at 767.778 kb on - strand, within DZA65_RS03645at 767.778 kb on - strand, within DZA65_RS03645at 768.029 kb on + strand, within DZA65_RS03645at 768.029 kb on + strand, within DZA65_RS03645at 768.029 kb on + strand, within DZA65_RS03645at 768.030 kb on - strand, within DZA65_RS03645at 768.030 kb on - strand, within DZA65_RS03645at 768.030 kb on - strand, within DZA65_RS03645at 768.030 kb on - strand, within DZA65_RS03645at 768.128 kb on + strand, within DZA65_RS03645at 768.128 kb on + strand, within DZA65_RS03645at 768.129 kb on - strand, within DZA65_RS03645at 768.129 kb on - strand, within DZA65_RS03645at 768.129 kb on - strand, within DZA65_RS03645at 768.145 kb on + strand, within DZA65_RS03645at 768.146 kb on - strand, within DZA65_RS03645at 768.146 kb on - strand, within DZA65_RS03645at 768.247 kb on + strand, within DZA65_RS03645at 768.247 kb on + strand, within DZA65_RS03645at 768.248 kb on - strand, within DZA65_RS03645at 768.248 kb on - strand, within DZA65_RS03645at 768.443 kb on + strand, within DZA65_RS03645at 768.443 kb on + strand, within DZA65_RS03645at 768.443 kb on + strand, within DZA65_RS03645at 768.443 kb on + strand, within DZA65_RS03645at 768.444 kb on - strand, within DZA65_RS03645at 768.444 kb on - strand, within DZA65_RS03645at 768.444 kb on - strand, within DZA65_RS03645at 768.444 kb on - strand, within DZA65_RS03645at 768.564 kb on + strand, within DZA65_RS03645at 768.617 kb on - strandat 768.682 kb on + strandat 768.682 kb on + strandat 768.730 kb on + strandat 768.731 kb on - strandat 768.748 kb on + strandat 768.769 kb on + strandat 768.769 kb on + strandat 768.769 kb on + strandat 768.770 kb on - strandat 768.770 kb on - strandat 768.770 kb on - strandat 768.770 kb on - strandat 768.829 kb on + strand, within DZA65_RS03650at 768.829 kb on + strand, within DZA65_RS03650at 768.830 kb on - strand, within DZA65_RS03650at 768.830 kb on - strand, within DZA65_RS03650at 768.830 kb on - strand, within DZA65_RS03650at 768.832 kb on + strand, within DZA65_RS03650at 768.853 kb on + strand, within DZA65_RS03650at 768.854 kb on - strand, within DZA65_RS03650at 768.854 kb on - strand, within DZA65_RS03650at 768.854 kb on - strand, within DZA65_RS03650at 768.856 kb on + strand, within DZA65_RS03650at 768.856 kb on + strand, within DZA65_RS03650at 768.856 kb on + strand, within DZA65_RS03650at 768.856 kb on + strand, within DZA65_RS03650at 768.857 kb on - strand, within DZA65_RS03650at 768.857 kb on - strand, within DZA65_RS03650at 768.857 kb on - strand, within DZA65_RS03650at 768.857 kb on - strand, within DZA65_RS03650at 768.857 kb on - strand, within DZA65_RS03650at 768.947 kb on + strand, within DZA65_RS03650at 768.947 kb on + strand, within DZA65_RS03650at 769.203 kb on - strand, within DZA65_RS03650at 769.203 kb on - strand, within DZA65_RS03650at 769.242 kb on + strand, within DZA65_RS03650at 769.242 kb on + strandat 769.242 kb on + strand, within DZA65_RS03650at 769.242 kb on + strand, within DZA65_RS03650at 769.243 kb on - strand, within DZA65_RS03650at 769.243 kb on - strand, within DZA65_RS03650at 769.243 kb on - strand, within DZA65_RS03650at 769.247 kb on - strand, within DZA65_RS03650at 769.247 kb on - strand, within DZA65_RS03650at 769.291 kb on + strand, within DZA65_RS03650at 769.291 kb on + strand, within DZA65_RS03650at 769.291 kb on + strand, within DZA65_RS03650at 769.291 kb on + strand, within DZA65_RS03650at 769.291 kb on + strand, within DZA65_RS03650at 769.291 kb on + strand, within DZA65_RS03650at 769.291 kb on + strand, within DZA65_RS03650at 769.291 kb on + strand, within DZA65_RS03650at 769.291 kb on + strand, within DZA65_RS03650at 769.291 kb on + strand, within DZA65_RS03650at 769.291 kb on + strand, within DZA65_RS03650at 769.292 kb on - strand, within DZA65_RS03650at 769.292 kb on - strand, within DZA65_RS03650at 769.292 kb on - strand, within DZA65_RS03650at 769.292 kb on - strand, within DZA65_RS03650at 769.292 kb on - strand, within DZA65_RS03650at 769.292 kb on - strand, within DZA65_RS03650at 769.292 kb on - strand, within DZA65_RS03650at 769.292 kb on - strand, within DZA65_RS03650at 769.300 kb on + strand, within DZA65_RS03650at 769.374 kb on + strand, within DZA65_RS03650at 769.375 kb on - strand, within DZA65_RS03650at 769.375 kb on - strand, within DZA65_RS03650at 769.375 kb on - strand, within DZA65_RS03650at 769.375 kb on - strand, within DZA65_RS03650at 769.420 kb on - strand, within DZA65_RS03650at 769.532 kb on - strandat 769.730 kb on + strand, within DZA65_RS03655at 769.730 kb on + strand, within DZA65_RS03655at 769.730 kb on + strand, within DZA65_RS03655at 769.745 kb on + strand, within DZA65_RS03655at 769.745 kb on + strand, within DZA65_RS03655at 769.745 kb on + strand, within DZA65_RS03655at 769.745 kb on + strand, within DZA65_RS03655at 769.745 kb on + strand, within DZA65_RS03655at 769.746 kb on - strand, within DZA65_RS03655at 769.746 kb on - strand, within DZA65_RS03655at 769.746 kb on - strand, within DZA65_RS03655at 769.749 kb on + strand, within DZA65_RS03655at 769.749 kb on + strand, within DZA65_RS03655at 769.750 kb on - strand, within DZA65_RS03655at 769.750 kb on - strand, within DZA65_RS03655at 769.750 kb on - strand, within DZA65_RS03655at 769.750 kb on - strand, within DZA65_RS03655at 769.750 kb on - strand, within DZA65_RS03655at 769.750 kb on - strand, within DZA65_RS03655at 769.750 kb on - strand, within DZA65_RS03655at 769.750 kb on - strand, within DZA65_RS03655at 769.750 kb on - strand, within DZA65_RS03655at 769.811 kb on - strand, within DZA65_RS03655at 769.919 kb on + strand, within DZA65_RS03655at 769.920 kb on - strandat 769.920 kb on - strand, within DZA65_RS03655at 770.035 kb on + strand, within DZA65_RS03655at 770.035 kb on + strand, within DZA65_RS03655at 770.035 kb on + strand, within DZA65_RS03655at 770.035 kb on + strand, within DZA65_RS03655at 770.036 kb on - strand, within DZA65_RS03655at 770.036 kb on - strand, within DZA65_RS03655at 770.036 kb on - strand, within DZA65_RS03655at 770.075 kb on + strand, within DZA65_RS03655at 770.076 kb on - strand, within DZA65_RS03655at 770.076 kb on - strand, within DZA65_RS03655at 770.145 kb on - strand, within DZA65_RS03655at 770.153 kb on - strand, within DZA65_RS03655at 770.153 kb on - strand, within DZA65_RS03655at 770.275 kb on - strand, within DZA65_RS03655at 770.275 kb on - strand, within DZA65_RS03655at 770.284 kb on + strand, within DZA65_RS03655at 770.284 kb on + strand, within DZA65_RS03655at 770.290 kb on + strand, within DZA65_RS03655at 770.291 kb on - strand, within DZA65_RS03655at 770.412 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Upstate
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767,738 + DZA65_RS03645 0.12 +0.1
767,743 + DZA65_RS03645 0.12 -0.2
767,743 + DZA65_RS03645 0.12 -0.3
767,743 + DZA65_RS03645 0.12 -0.3
767,743 + DZA65_RS03645 0.12 -1.7
767,743 + DZA65_RS03645 0.12 -2.4
767,743 + DZA65_RS03645 0.12 -0.6
767,744 - DZA65_RS03645 0.13 +0.0
767,744 - DZA65_RS03645 0.13 +0.1
767,744 - DZA65_RS03645 0.13 +0.3
767,744 - DZA65_RS03645 0.13 -0.5
767,744 - DZA65_RS03645 0.13 -1.2
767,777 + DZA65_RS03645 0.16 -1.7
767,777 + DZA65_RS03645 0.16 -1.7
767,778 - DZA65_RS03645 0.16 +0.7
767,778 - DZA65_RS03645 0.16 -0.2
768,029 + DZA65_RS03645 0.39 -0.3
768,029 + DZA65_RS03645 0.39 +0.5
768,029 + DZA65_RS03645 0.39 +0.5
768,030 - DZA65_RS03645 0.39 -0.4
768,030 - DZA65_RS03645 0.39 -1.1
768,030 - DZA65_RS03645 0.39 +0.3
768,030 - DZA65_RS03645 0.39 +0.1
768,128 + DZA65_RS03645 0.48 -0.5
768,128 + DZA65_RS03645 0.48 -0.8
768,129 - DZA65_RS03645 0.48 +2.1
768,129 - DZA65_RS03645 0.48 +1.1
768,129 - DZA65_RS03645 0.48 -0.5
768,145 + DZA65_RS03645 0.49 -1.1
768,146 - DZA65_RS03645 0.50 +0.4
768,146 - DZA65_RS03645 0.50 -0.2
768,247 + DZA65_RS03645 0.59 -0.1
768,247 + DZA65_RS03645 0.59 -1.4
768,248 - DZA65_RS03645 0.59 -1.7
768,248 - DZA65_RS03645 0.59 -0.6
768,443 + DZA65_RS03645 0.77 +0.1
768,443 + DZA65_RS03645 0.77 -0.1
768,443 + DZA65_RS03645 0.77 -0.5
768,443 + DZA65_RS03645 0.77 -0.6
768,444 - DZA65_RS03645 0.77 +1.5
768,444 - DZA65_RS03645 0.77 -0.7
768,444 - DZA65_RS03645 0.77 -0.8
768,444 - DZA65_RS03645 0.77 -0.3
768,564 + DZA65_RS03645 0.88 +1.5
768,617 - +0.2
768,682 + +1.1
768,682 + -0.7
768,730 + -0.7
768,731 - -3.0
768,748 + -0.4
768,769 + -0.7
768,769 + -0.7
768,769 + -1.1
768,770 - +0.8
768,770 - +4.4
768,770 - +0.8
768,770 - +1.1
768,829 + DZA65_RS03650 0.17 -0.5
768,829 + DZA65_RS03650 0.17 +1.7
768,830 - DZA65_RS03650 0.17 +3.3
768,830 - DZA65_RS03650 0.17 +0.3
768,830 - DZA65_RS03650 0.17 +0.5
768,832 + DZA65_RS03650 0.17 -0.9
768,853 + DZA65_RS03650 0.19 +0.8
768,854 - DZA65_RS03650 0.20 +0.5
768,854 - DZA65_RS03650 0.20 -0.9
768,854 - DZA65_RS03650 0.20 +0.6
768,856 + DZA65_RS03650 0.20 -0.5
768,856 + DZA65_RS03650 0.20 +1.1
768,856 + DZA65_RS03650 0.20 +0.1
768,856 + DZA65_RS03650 0.20 -0.3
768,857 - DZA65_RS03650 0.20 +0.7
768,857 - DZA65_RS03650 0.20 +0.1
768,857 - DZA65_RS03650 0.20 -1.3
768,857 - DZA65_RS03650 0.20 -2.1
768,857 - DZA65_RS03650 0.20 -0.6
768,947 + DZA65_RS03650 0.31 -0.4
768,947 + DZA65_RS03650 0.31 +0.3
769,203 - DZA65_RS03650 0.62 +0.5
769,203 - DZA65_RS03650 0.62 +1.1
769,242 + DZA65_RS03650 0.67 -0.7
769,242 + -0.7
769,242 + DZA65_RS03650 0.67 +1.2
769,242 + DZA65_RS03650 0.67 -0.1
769,243 - DZA65_RS03650 0.67 -2.5
769,243 - DZA65_RS03650 0.67 +0.6
769,243 - DZA65_RS03650 0.67 -0.0
769,247 - DZA65_RS03650 0.67 -1.9
769,247 - DZA65_RS03650 0.67 +0.7
769,291 + DZA65_RS03650 0.73 -1.4
769,291 + DZA65_RS03650 0.73 +2.4
769,291 + DZA65_RS03650 0.73 -0.4
769,291 + DZA65_RS03650 0.73 -0.5
769,291 + DZA65_RS03650 0.73 +2.2
769,291 + DZA65_RS03650 0.73 -2.1
769,291 + DZA65_RS03650 0.73 +4.2
769,291 + DZA65_RS03650 0.73 +1.2
769,291 + DZA65_RS03650 0.73 +0.5
769,291 + DZA65_RS03650 0.73 -2.4
769,291 + DZA65_RS03650 0.73 +0.8
769,292 - DZA65_RS03650 0.73 -1.7
769,292 - DZA65_RS03650 0.73 -0.4
769,292 - DZA65_RS03650 0.73 -1.1
769,292 - DZA65_RS03650 0.73 +0.1
769,292 - DZA65_RS03650 0.73 -1.1
769,292 - DZA65_RS03650 0.73 -0.3
769,292 - DZA65_RS03650 0.73 +0.2
769,292 - DZA65_RS03650 0.73 -2.3
769,300 + DZA65_RS03650 0.74 -2.6
769,374 + DZA65_RS03650 0.83 -0.1
769,375 - DZA65_RS03650 0.83 +0.2
769,375 - DZA65_RS03650 0.83 +0.1
769,375 - DZA65_RS03650 0.83 +0.6
769,375 - DZA65_RS03650 0.83 -0.1
769,420 - DZA65_RS03650 0.88 -1.7
769,532 - -2.6
769,730 + DZA65_RS03655 0.23 -0.1
769,730 + DZA65_RS03655 0.23 +1.8
769,730 + DZA65_RS03655 0.23 -1.3
769,745 + DZA65_RS03655 0.25 -1.1
769,745 + DZA65_RS03655 0.25 -0.8
769,745 + DZA65_RS03655 0.25 -1.5
769,745 + DZA65_RS03655 0.25 -1.9
769,745 + DZA65_RS03655 0.25 -1.3
769,746 - DZA65_RS03655 0.25 +1.1
769,746 - DZA65_RS03655 0.25 +1.1
769,746 - DZA65_RS03655 0.25 -2.4
769,749 + DZA65_RS03655 0.25 -2.4
769,749 + DZA65_RS03655 0.25 -0.2
769,750 - DZA65_RS03655 0.25 +0.6
769,750 - DZA65_RS03655 0.25 -0.1
769,750 - DZA65_RS03655 0.25 +0.3
769,750 - DZA65_RS03655 0.25 +1.1
769,750 - DZA65_RS03655 0.25 +0.7
769,750 - DZA65_RS03655 0.25 +0.1
769,750 - DZA65_RS03655 0.25 +0.6
769,750 - DZA65_RS03655 0.25 +0.3
769,750 - DZA65_RS03655 0.25 +1.1
769,811 - DZA65_RS03655 0.32 +1.1
769,919 + DZA65_RS03655 0.44 -0.5
769,920 - +0.3
769,920 - DZA65_RS03655 0.44 +0.3
770,035 + DZA65_RS03655 0.57 -1.9
770,035 + DZA65_RS03655 0.57 -3.3
770,035 + DZA65_RS03655 0.57 +0.2
770,035 + DZA65_RS03655 0.57 -1.9
770,036 - DZA65_RS03655 0.58 +0.6
770,036 - DZA65_RS03655 0.58 -0.4
770,036 - DZA65_RS03655 0.58 -3.0
770,075 + DZA65_RS03655 0.62 +1.1
770,076 - DZA65_RS03655 0.62 +0.7
770,076 - DZA65_RS03655 0.62 +1.1
770,145 - DZA65_RS03655 0.70 -1.3
770,153 - DZA65_RS03655 0.71 -0.3
770,153 - DZA65_RS03655 0.71 +0.3
770,275 - DZA65_RS03655 0.84 -0.9
770,275 - DZA65_RS03655 0.84 -0.5
770,284 + DZA65_RS03655 0.85 +1.6
770,284 + DZA65_RS03655 0.85 -0.1
770,290 + DZA65_RS03655 0.86 +1.3
770,291 - DZA65_RS03655 0.86 -1.9
770,412 + +0.1

Or see this region's nucleotide sequence