Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03040 and DZA65_RS03045 are separated by 159 nucleotides DZA65_RS03045 and DZA65_RS03050 are separated by 559 nucleotides
DZA65_RS03040: DZA65_RS03040 - FAD:protein FMN transferase ApbE, at 647,940 to 648,986
_RS03040
DZA65_RS03045: DZA65_RS03045 - coniferyl aldehyde dehydrogenase, at 649,146 to 650,582
_RS03045
DZA65_RS03050: DZA65_RS03050 - flavocytochrome c, at 651,142 to 653,919
_RS03050
Position (kb) 649
650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 648.168 kb on + strand, within DZA65_RS03040 at 648.169 kb on - strand, within DZA65_RS03040 at 648.169 kb on - strand, within DZA65_RS03040 at 648.169 kb on - strand, within DZA65_RS03040 at 648.230 kb on + strand, within DZA65_RS03040 at 648.231 kb on - strand, within DZA65_RS03040 at 648.231 kb on - strand, within DZA65_RS03040 at 648.248 kb on + strand, within DZA65_RS03040 at 648.251 kb on + strand, within DZA65_RS03040 at 648.251 kb on + strand, within DZA65_RS03040 at 648.251 kb on + strand, within DZA65_RS03040 at 648.251 kb on + strand, within DZA65_RS03040 at 648.252 kb on - strand, within DZA65_RS03040 at 648.395 kb on + strand, within DZA65_RS03040 at 648.471 kb on + strand, within DZA65_RS03040 at 648.471 kb on + strand, within DZA65_RS03040 at 648.471 kb on + strand, within DZA65_RS03040 at 648.471 kb on + strand, within DZA65_RS03040 at 648.471 kb on + strand, within DZA65_RS03040 at 648.471 kb on + strand, within DZA65_RS03040 at 648.472 kb on - strand at 648.472 kb on - strand, within DZA65_RS03040 at 648.472 kb on - strand, within DZA65_RS03040 at 648.472 kb on - strand, within DZA65_RS03040 at 648.552 kb on + strand, within DZA65_RS03040 at 648.552 kb on + strand, within DZA65_RS03040 at 648.552 kb on + strand, within DZA65_RS03040 at 648.552 kb on + strand, within DZA65_RS03040 at 648.552 kb on + strand, within DZA65_RS03040 at 648.552 kb on + strand, within DZA65_RS03040 at 648.553 kb on - strand, within DZA65_RS03040 at 648.653 kb on + strand, within DZA65_RS03040 at 648.714 kb on + strand, within DZA65_RS03040 at 648.715 kb on - strand, within DZA65_RS03040 at 648.914 kb on + strand at 648.927 kb on - strand at 649.024 kb on + strand at 649.030 kb on + strand at 649.030 kb on + strand at 649.030 kb on + strand at 649.030 kb on + strand at 649.031 kb on - strand at 649.031 kb on - strand at 649.031 kb on - strand at 649.031 kb on - strand at 649.031 kb on - strand at 649.034 kb on + strand at 649.034 kb on + strand at 649.034 kb on + strand at 649.035 kb on - strand at 649.053 kb on + strand at 649.053 kb on + strand at 649.054 kb on - strand at 649.054 kb on - strand at 649.073 kb on + strand at 649.073 kb on + strand at 649.073 kb on + strand at 649.073 kb on + strand at 649.074 kb on - strand at 649.088 kb on + strand at 649.124 kb on + strand at 649.124 kb on + strand at 649.124 kb on + strand at 649.125 kb on - strand at 649.134 kb on - strand at 649.167 kb on - strand at 649.211 kb on + strand at 649.211 kb on + strand at 649.211 kb on + strand at 649.256 kb on + strand at 649.256 kb on + strand at 649.256 kb on + strand at 649.256 kb on + strand at 649.256 kb on + strand at 649.256 kb on + strand at 649.256 kb on + strand at 649.257 kb on - strand at 649.257 kb on - strand at 649.257 kb on - strand at 649.257 kb on - strand at 649.257 kb on - strand at 649.263 kb on - strand at 649.277 kb on + strand at 649.277 kb on + strand at 649.277 kb on + strand at 649.278 kb on - strand at 649.320 kb on + strand, within DZA65_RS03045 at 649.320 kb on + strand, within DZA65_RS03045 at 649.321 kb on - strand, within DZA65_RS03045 at 649.586 kb on + strand, within DZA65_RS03045 at 649.587 kb on - strand, within DZA65_RS03045 at 649.587 kb on - strand, within DZA65_RS03045 at 649.587 kb on - strand, within DZA65_RS03045 at 649.587 kb on - strand, within DZA65_RS03045 at 649.587 kb on - strand, within DZA65_RS03045 at 649.685 kb on - strand, within DZA65_RS03045 at 649.907 kb on + strand, within DZA65_RS03045 at 649.907 kb on + strand, within DZA65_RS03045 at 649.907 kb on + strand, within DZA65_RS03045 at 649.908 kb on - strand, within DZA65_RS03045 at 649.920 kb on + strand, within DZA65_RS03045 at 649.920 kb on + strand, within DZA65_RS03045 at 649.920 kb on + strand, within DZA65_RS03045 at 649.920 kb on + strand, within DZA65_RS03045 at 649.921 kb on - strand, within DZA65_RS03045 at 649.921 kb on - strand, within DZA65_RS03045 at 649.921 kb on - strand, within DZA65_RS03045 at 649.930 kb on + strand, within DZA65_RS03045 at 649.931 kb on - strand, within DZA65_RS03045 at 649.931 kb on - strand, within DZA65_RS03045 at 649.990 kb on - strand, within DZA65_RS03045 at 650.000 kb on + strand, within DZA65_RS03045 at 650.016 kb on + strand, within DZA65_RS03045 at 650.016 kb on + strand, within DZA65_RS03045 at 650.016 kb on + strand, within DZA65_RS03045 at 650.016 kb on + strand, within DZA65_RS03045 at 650.016 kb on + strand, within DZA65_RS03045 at 650.017 kb on - strand, within DZA65_RS03045 at 650.017 kb on - strand, within DZA65_RS03045 at 650.017 kb on - strand, within DZA65_RS03045 at 650.017 kb on - strand, within DZA65_RS03045 at 650.031 kb on - strand, within DZA65_RS03045 at 650.139 kb on - strand, within DZA65_RS03045 at 650.226 kb on + strand, within DZA65_RS03045 at 650.226 kb on + strand, within DZA65_RS03045 at 650.226 kb on + strand, within DZA65_RS03045 at 650.226 kb on + strand, within DZA65_RS03045 at 650.227 kb on - strand, within DZA65_RS03045 at 650.227 kb on - strand, within DZA65_RS03045 at 650.227 kb on - strand, within DZA65_RS03045 at 650.227 kb on - strand, within DZA65_RS03045 at 650.227 kb on - strand, within DZA65_RS03045 at 650.235 kb on - strand, within DZA65_RS03045 at 650.289 kb on + strand, within DZA65_RS03045 at 650.289 kb on + strand, within DZA65_RS03045 at 650.289 kb on + strand, within DZA65_RS03045 at 650.290 kb on - strand, within DZA65_RS03045 at 650.290 kb on - strand, within DZA65_RS03045 at 650.481 kb on + strand at 650.561 kb on - strand at 650.561 kb on - strand at 650.598 kb on + strand at 650.598 kb on + strand at 650.599 kb on - strand at 650.599 kb on - strand at 650.600 kb on + strand at 650.627 kb on - strand at 650.627 kb on - strand at 650.653 kb on + strand at 650.653 kb on + strand at 650.654 kb on - strand at 650.654 kb on - strand at 650.679 kb on - strand at 650.679 kb on - strand at 650.684 kb on + strand at 650.685 kb on - strand at 650.721 kb on + strand at 650.744 kb on + strand at 650.767 kb on + strand at 650.767 kb on + strand at 650.768 kb on - strand at 650.861 kb on + strand at 650.866 kb on + strand at 650.866 kb on + strand at 650.866 kb on + strand at 650.866 kb on + strand at 650.867 kb on - strand at 650.867 kb on - strand at 650.876 kb on + strand at 650.877 kb on - strand at 650.877 kb on - strand at 650.877 kb on - strand at 650.877 kb on - strand at 650.878 kb on + strand at 650.891 kb on + strand at 650.892 kb on - strand at 650.946 kb on + strand at 650.993 kb on - strand at 650.993 kb on - strand at 651.027 kb on + strand at 651.027 kb on + strand at 651.041 kb on + strand at 651.042 kb on - strand at 651.042 kb on - strand at 651.050 kb on + strand at 651.085 kb on + strand at 651.116 kb on + strand at 651.117 kb on - strand at 651.122 kb on + strand at 651.126 kb on + strand at 651.127 kb on - strand at 651.174 kb on + strand at 651.175 kb on - strand at 651.244 kb on + strand at 651.244 kb on + strand at 651.245 kb on - strand at 651.245 kb on - strand at 651.245 kb on - strand at 651.277 kb on + strand at 651.277 kb on + strand at 651.277 kb on + strand at 651.277 kb on + strand at 651.277 kb on + strand at 651.277 kb on + strand at 651.277 kb on + strand at 651.278 kb on - strand at 651.278 kb on - strand at 651.278 kb on - strand at 651.278 kb on - strand at 651.280 kb on + strand at 651.280 kb on + strand at 651.281 kb on - strand at 651.281 kb on - strand at 651.330 kb on + strand at 651.331 kb on - strand at 651.339 kb on + strand at 651.454 kb on + strand, within DZA65_RS03050 at 651.454 kb on + strand, within DZA65_RS03050 at 651.454 kb on + strand, within DZA65_RS03050 at 651.454 kb on + strand, within DZA65_RS03050 at 651.455 kb on - strand, within DZA65_RS03050 at 651.455 kb on - strand, within DZA65_RS03050 at 651.455 kb on - strand, within DZA65_RS03050 at 651.455 kb on - strand, within DZA65_RS03050
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 648,168 + DZA65_RS03040 0.22 +0.2 648,169 - DZA65_RS03040 0.22 -0.9 648,169 - DZA65_RS03040 0.22 +1.3 648,169 - DZA65_RS03040 0.22 +1.3 648,230 + DZA65_RS03040 0.28 -0.7 648,231 - DZA65_RS03040 0.28 -1.2 648,231 - DZA65_RS03040 0.28 +0.1 648,248 + DZA65_RS03040 0.29 -1.7 648,251 + DZA65_RS03040 0.30 +0.7 648,251 + DZA65_RS03040 0.30 -2.5 648,251 + DZA65_RS03040 0.30 -0.5 648,251 + DZA65_RS03040 0.30 -3.0 648,252 - DZA65_RS03040 0.30 +1.1 648,395 + DZA65_RS03040 0.43 -1.2 648,471 + DZA65_RS03040 0.51 -0.9 648,471 + DZA65_RS03040 0.51 -0.8 648,471 + DZA65_RS03040 0.51 +0.5 648,471 + DZA65_RS03040 0.51 -1.1 648,471 + DZA65_RS03040 0.51 -0.5 648,471 + DZA65_RS03040 0.51 -1.2 648,472 - -0.9 648,472 - DZA65_RS03040 0.51 -0.5 648,472 - DZA65_RS03040 0.51 -0.5 648,472 - DZA65_RS03040 0.51 -0.5 648,552 + DZA65_RS03040 0.58 -2.8 648,552 + DZA65_RS03040 0.58 -1.4 648,552 + DZA65_RS03040 0.58 +1.8 648,552 + DZA65_RS03040 0.58 +0.1 648,552 + DZA65_RS03040 0.58 -2.5 648,552 + DZA65_RS03040 0.58 +1.0 648,553 - DZA65_RS03040 0.59 -0.1 648,653 + DZA65_RS03040 0.68 +0.1 648,714 + DZA65_RS03040 0.74 -0.7 648,715 - DZA65_RS03040 0.74 +1.7 648,914 + +0.4 648,927 - -0.5 649,024 + +1.1 649,030 + -0.8 649,030 + -0.2 649,030 + -1.2 649,030 + -0.9 649,031 - +1.3 649,031 - -1.4 649,031 - -1.9 649,031 - -1.5 649,031 - +1.5 649,034 + -0.1 649,034 + +0.3 649,034 + +0.6 649,035 - -0.9 649,053 + +0.4 649,053 + -0.7 649,054 - +0.5 649,054 - +0.8 649,073 + -0.9 649,073 + +1.1 649,073 + -0.0 649,073 + -1.9 649,074 - +1.1 649,088 + +0.6 649,124 + +0.9 649,124 + +0.1 649,124 + +0.8 649,125 - +0.3 649,134 - -0.0 649,167 - +0.2 649,211 + +0.1 649,211 + -0.0 649,211 + -0.5 649,256 + +2.2 649,256 + -0.5 649,256 + -0.1 649,256 + +0.1 649,256 + +0.5 649,256 + -2.2 649,256 + -0.1 649,257 - +0.4 649,257 - -2.2 649,257 - +0.9 649,257 - -0.0 649,257 - +0.4 649,263 - +1.3 649,277 + +1.8 649,277 + +0.4 649,277 + -1.2 649,278 - +0.5 649,320 + DZA65_RS03045 0.12 -1.5 649,320 + DZA65_RS03045 0.12 -2.1 649,321 - DZA65_RS03045 0.12 +1.1 649,586 + DZA65_RS03045 0.31 -1.1 649,587 - DZA65_RS03045 0.31 +0.4 649,587 - DZA65_RS03045 0.31 -1.7 649,587 - DZA65_RS03045 0.31 -0.7 649,587 - DZA65_RS03045 0.31 -0.4 649,587 - DZA65_RS03045 0.31 -0.3 649,685 - DZA65_RS03045 0.38 +0.4 649,907 + DZA65_RS03045 0.53 +0.8 649,907 + DZA65_RS03045 0.53 -2.7 649,907 + DZA65_RS03045 0.53 -1.8 649,908 - DZA65_RS03045 0.53 +0.4 649,920 + DZA65_RS03045 0.54 +1.1 649,920 + DZA65_RS03045 0.54 +0.1 649,920 + DZA65_RS03045 0.54 -1.1 649,920 + DZA65_RS03045 0.54 -0.8 649,921 - DZA65_RS03045 0.54 -0.9 649,921 - DZA65_RS03045 0.54 -1.2 649,921 - DZA65_RS03045 0.54 -0.9 649,930 + DZA65_RS03045 0.55 -3.1 649,931 - DZA65_RS03045 0.55 -1.2 649,931 - DZA65_RS03045 0.55 +0.3 649,990 - DZA65_RS03045 0.59 +0.8 650,000 + DZA65_RS03045 0.59 -0.9 650,016 + DZA65_RS03045 0.61 -1.0 650,016 + DZA65_RS03045 0.61 +0.8 650,016 + DZA65_RS03045 0.61 -1.5 650,016 + DZA65_RS03045 0.61 +0.7 650,016 + DZA65_RS03045 0.61 -0.8 650,017 - DZA65_RS03045 0.61 -0.4 650,017 - DZA65_RS03045 0.61 +1.7 650,017 - DZA65_RS03045 0.61 -0.2 650,017 - DZA65_RS03045 0.61 +0.6 650,031 - DZA65_RS03045 0.62 -0.2 650,139 - DZA65_RS03045 0.69 +0.2 650,226 + DZA65_RS03045 0.75 +0.7 650,226 + DZA65_RS03045 0.75 +1.6 650,226 + DZA65_RS03045 0.75 -0.5 650,226 + DZA65_RS03045 0.75 -1.5 650,227 - DZA65_RS03045 0.75 +2.1 650,227 - DZA65_RS03045 0.75 -1.0 650,227 - DZA65_RS03045 0.75 -1.5 650,227 - DZA65_RS03045 0.75 -1.5 650,227 - DZA65_RS03045 0.75 +0.5 650,235 - DZA65_RS03045 0.76 -1.6 650,289 + DZA65_RS03045 0.80 +0.1 650,289 + DZA65_RS03045 0.80 -0.3 650,289 + DZA65_RS03045 0.80 -0.1 650,290 - DZA65_RS03045 0.80 +0.7 650,290 - DZA65_RS03045 0.80 -0.3 650,481 + +1.1 650,561 - +0.2 650,561 - -0.0 650,598 + +0.0 650,598 + -0.5 650,599 - -0.6 650,599 - -2.1 650,600 + +1.7 650,627 - +0.3 650,627 - -1.5 650,653 + +1.1 650,653 + +2.4 650,654 - -0.5 650,654 - -1.7 650,679 - +0.1 650,679 - -2.3 650,684 + +0.5 650,685 - -1.7 650,721 + +0.8 650,744 + +0.8 650,767 + +0.6 650,767 + +0.6 650,768 - -0.7 650,861 + -0.9 650,866 + +0.9 650,866 + +1.0 650,866 + +1.1 650,866 + -3.1 650,867 - -0.3 650,867 - +0.0 650,876 + +0.2 650,877 - +0.5 650,877 - +0.5 650,877 - -0.4 650,877 - +0.4 650,878 + -0.4 650,891 + +0.7 650,892 - -0.1 650,946 + +0.2 650,993 - +1.3 650,993 - -0.9 651,027 + +0.8 651,027 + -1.2 651,041 + -0.9 651,042 - +0.7 651,042 - +1.6 651,050 + +1.6 651,085 + +0.1 651,116 + -0.5 651,117 - -1.9 651,122 + -0.4 651,126 + +0.1 651,127 - -0.7 651,174 + -0.6 651,175 - -0.5 651,244 + +0.8 651,244 + +2.5 651,245 - +0.3 651,245 - -0.1 651,245 - +0.2 651,277 + -0.9 651,277 + -0.9 651,277 + -0.2 651,277 + -0.9 651,277 + -1.5 651,277 + -1.5 651,277 + -1.5 651,278 - +1.4 651,278 - -0.1 651,278 - +1.1 651,278 - +0.5 651,280 + -2.7 651,280 + +0.3 651,281 - -2.2 651,281 - -1.9 651,330 + +0.0 651,331 - -0.4 651,339 + -1.2 651,454 + DZA65_RS03050 0.11 -1.6 651,454 + DZA65_RS03050 0.11 +0.8 651,454 + DZA65_RS03050 0.11 -0.5 651,454 + DZA65_RS03050 0.11 +2.4 651,455 - DZA65_RS03050 0.11 +0.1 651,455 - DZA65_RS03050 0.11 -0.7 651,455 - DZA65_RS03050 0.11 -0.4 651,455 - DZA65_RS03050 0.11 -0.5
Or see this region's nucleotide sequence