Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02925

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Stem-Upstate
				remove
625,458	+			-0.1
625,458	+			-1.1
625,458	+			+0.1
625,458	+			-0.7
625,459	-			-1.2
625,459	-			-0.4
625,459	-			-0.8
625,459	-			-2.3
625,459	-			+0.4
625,459	-			-0.3
625,459	-			+1.7
625,461	+			+1.1
625,461	+			-1.6
625,461	+			-0.4
625,461	+			+0.2
625,462	-			-0.5
625,462	-			-1.5
625,523	+	DZA65_RS02915	0.16	-1.5
625,523	+	DZA65_RS02915	0.16	-0.8
625,523	+	DZA65_RS02915	0.16	-0.9
625,523	+	DZA65_RS02915	0.16	+0.0
625,523	+	DZA65_RS02915	0.16	-0.5
625,523	+	DZA65_RS02915	0.16	-1.2
625,524	-	DZA65_RS02915	0.16	+1.7
625,524	-	DZA65_RS02915	0.16	-1.8
625,524	-	DZA65_RS02915	0.16	+1.4
625,524	-	DZA65_RS02915	0.16	+1.5
625,524	-	DZA65_RS02915	0.16	-2.5
625,524	-	DZA65_RS02915	0.16	+1.3
625,528	-	DZA65_RS02915	0.17	-0.2
625,528	-	DZA65_RS02915	0.17	+0.3
625,528	-	DZA65_RS02915	0.17	+0.1
625,699	+	DZA65_RS02915	0.60	-0.2
625,700	-	DZA65_RS02915	0.61	+3.1
625,741	+	DZA65_RS02915	0.71	+0.8
625,741	+	DZA65_RS02915	0.71	-1.5
625,741	+	DZA65_RS02915	0.71	-0.4
625,741	+	DZA65_RS02915	0.71	+0.5
625,741	+	DZA65_RS02915	0.71	+0.5
625,741	+	DZA65_RS02915	0.71	-0.6
625,741	+	DZA65_RS02915	0.71	-1.1
625,741	+	DZA65_RS02915	0.71	+1.7
625,741	+	DZA65_RS02915	0.71	-0.7
625,741	+	DZA65_RS02915	0.71	-0.3
625,741	+	DZA65_RS02915	0.71	-0.5
625,742	-	DZA65_RS02915	0.71	-1.0
625,742	-	DZA65_RS02915	0.71	-1.2
625,742	-	DZA65_RS02915	0.71	-0.6
625,742	-	DZA65_RS02915	0.71	+1.4
625,742	-	DZA65_RS02915	0.71	-1.3
625,742	-	DZA65_RS02915	0.71	+0.8
625,742	-	DZA65_RS02915	0.71	-0.9
625,742	-	DZA65_RS02915	0.71	+1.1
625,742	-	DZA65_RS02915	0.71	-1.1
625,742	-	DZA65_RS02915	0.71	+1.1
625,742	-	DZA65_RS02915	0.71	-1.2
625,742	-	DZA65_RS02915	0.71	-0.2
625,742	-	DZA65_RS02915	0.71	-1.0
625,743	+	DZA65_RS02915	0.71	+1.7
625,743	+	DZA65_RS02915	0.71	-0.6
625,743	+	DZA65_RS02915	0.71	-0.5
625,743	+	DZA65_RS02915	0.71	+0.1
625,743	+	DZA65_RS02915	0.71	+1.4
625,743	+	DZA65_RS02915	0.71	-0.6
625,743	+	DZA65_RS02915	0.71	-1.8
625,743	+	DZA65_RS02915	0.71	-1.6
625,743	+	DZA65_RS02915	0.71	+0.4
625,743	+	DZA65_RS02915	0.71	+0.9
625,743	+	DZA65_RS02915	0.71	+1.1
625,743	+	DZA65_RS02915	0.71	-0.6
625,743	+	DZA65_RS02915	0.71	+0.5
625,743	+	DZA65_RS02915	0.71	+0.6
625,743	+	DZA65_RS02915	0.71	-1.9
625,743	+	DZA65_RS02915	0.71	+1.1
625,743	+	DZA65_RS02915	0.71	-0.2
625,743	+	DZA65_RS02915	0.71	+0.7
625,743	+	DZA65_RS02915	0.71	-0.2
625,743	+	DZA65_RS02915	0.71	-0.0
625,743	+	DZA65_RS02915	0.71	-0.5
625,744	-	DZA65_RS02915	0.72	+0.8
625,744	-	DZA65_RS02915	0.72	+0.5
625,744	-	DZA65_RS02915	0.72	+1.1
625,744	-	DZA65_RS02915	0.72	-0.0
625,744	-	DZA65_RS02915	0.72	+1.1
625,744	-	DZA65_RS02915	0.72	-1.2
625,744	-	DZA65_RS02915	0.72	-0.6
625,744	-			-2.2
625,744	-	DZA65_RS02915	0.72	+0.2
625,744	-	DZA65_RS02915	0.72	+0.4
625,744	-	DZA65_RS02915	0.72	-0.6
625,744	-	DZA65_RS02915	0.72	-1.1
625,744	-	DZA65_RS02915	0.72	-0.9
625,744	-	DZA65_RS02915	0.72	+0.6
625,744	-	DZA65_RS02915	0.72	+1.9
625,744	-	DZA65_RS02915	0.72	+0.1
625,744	-	DZA65_RS02915	0.72	-0.3
625,744	-	DZA65_RS02915	0.72	-2.7
625,744	-	DZA65_RS02915	0.72	+0.7
625,744	-	DZA65_RS02915	0.72	-0.5
625,761	+	DZA65_RS02915	0.76	+0.7
625,761	+	DZA65_RS02915	0.76	-0.1
625,761	+	DZA65_RS02915	0.76	-1.9
625,762	-	DZA65_RS02915	0.76	-2.2
625,762	-	DZA65_RS02915	0.76	+2.1
625,762	-	DZA65_RS02915	0.76	+0.1
625,869	+			+0.6
625,870	-			-2.1
625,870	-			-1.7
625,925	-			+0.3
625,925	-			-0.2
625,936	-			+0.4
625,953	+			-0.1
625,953	+			+0.0
625,953	+			+0.3
625,954	-			-0.5
625,954	-			-0.3
625,954	-			+1.1
625,954	-			+1.3
625,954	-			-1.8
625,954	-			-0.3
625,954	-			-0.1
625,956	+			-1.7
625,956	+			+2.1
625,956	+			+0.7
625,957	-			+0.5
625,957	-			-1.6
625,957	-			-0.5
625,957	-			-1.7
625,957	-			+0.3
625,957	-			+2.1
626,031	+			+1.1
626,034	+			+0.8
626,061	+			+0.2
626,061	+			+0.8
626,062	-			-0.1
626,062	-			-2.5
626,062	-			-0.5
626,062	-			+2.0
626,085	+			+1.8
626,085	+			-1.3
626,085	+			-0.3
626,085	+			+0.1
626,085	+			+0.1
626,086	-			+3.0
626,086	-			-0.1
626,086	-			+0.7
626,086	-			-0.2
626,086	-			+0.3
626,146	+			+0.5
626,147	-			-0.6
626,175	+			-0.4
626,176	-	DZA65_RS02920	0.10	-0.1
626,176	-	DZA65_RS02920	0.10	+2.2
626,210	+	DZA65_RS02920	0.21	-0.2
626,210	+			-1.5
626,211	-	DZA65_RS02920	0.22	-0.6
626,256	+	DZA65_RS02920	0.36	+1.7
626,256	+	DZA65_RS02920	0.36	-0.2
626,257	-	DZA65_RS02920	0.37	-0.0
626,265	+	DZA65_RS02920	0.39	+0.1
626,266	-	DZA65_RS02920	0.40	+0.1
626,304	+	DZA65_RS02920	0.52	-0.0
626,327	-	DZA65_RS02920	0.59	+1.1
626,535	-	DZA65_RS02925	0.22	+0.7
626,735	+	DZA65_RS02925	0.72	+1.1
626,785	+	DZA65_RS02925	0.85	-1.6
626,785	+	DZA65_RS02925	0.85	+1.8
626,785	+	DZA65_RS02925	0.85	-0.5
626,786	-	DZA65_RS02925	0.85	+1.0
626,792	+	DZA65_RS02925	0.86	+0.4
626,793	-	DZA65_RS02925	0.87	+1.7
626,793	-	DZA65_RS02925	0.87	-2.1
626,793	-	DZA65_RS02925	0.87	-0.1
626,793	-	DZA65_RS02925	0.87	+1.2
626,924	-	DZA65_RS02930	0.25	-0.9
626,924	-	DZA65_RS02930	0.25	+1.4
626,971	+	DZA65_RS02930	0.40	-0.5
626,971	+	DZA65_RS02930	0.40	-1.7
626,971	+	DZA65_RS02930	0.40	-1.0
626,971	+	DZA65_RS02930	0.40	+0.9
626,972	-	DZA65_RS02930	0.40	+0.7
627,065	-	DZA65_RS02930	0.71	-0.9
627,080	+	DZA65_RS02930	0.75	-0.7
627,080	+	DZA65_RS02930	0.75	+2.1
627,081	-	DZA65_RS02930	0.76	-0.6
627,081	-	DZA65_RS02930	0.76	-1.9
627,081	-	DZA65_RS02930	0.76	+0.7
627,081	-	DZA65_RS02930	0.76	+0.2
627,081	-	DZA65_RS02930	0.76	-0.0
627,182	+			+1.2
627,184	-			-0.6
627,204	+			-2.3
627,205	-			+0.1
627,205	-			-2.1
627,205	-			-0.5
627,208	+			+0.3
627,208	+			+1.4
627,208	+			-0.3
627,208	+			-1.3
627,208	+			+0.1
627,208	+			-1.9
627,208	+			+0.1
627,208	+			+0.4
627,208	+			-2.2
627,208	+			+0.5
627,209	-			-2.2
627,209	-			+1.5
627,209	-			+1.1
627,209	-			-0.6
627,209	-			+0.4
627,209	-			-0.5
627,209	-			-1.7
627,209	-			-0.1
627,209	-			+0.1
627,209	-			+0.6
627,209	-			+0.5
627,209	-			+1.0
627,211	-			+0.7
627,211	-			+0.8
627,308	+			+0.3
627,308	+			+0.1
627,308	+			+1.1
627,377	+			-0.8
627,429	+	DZA65_RS02935	0.22	-1.2
627,430	-	DZA65_RS02935	0.22	-0.5
627,430	-	DZA65_RS02935	0.22	-2.3
627,430	-	DZA65_RS02935	0.22	-1.3
627,430	-	DZA65_RS02935	0.22	+0.8
627,538	+	DZA65_RS02935	0.53	-0.0
627,538	+	DZA65_RS02935	0.53	+0.3
627,538	+	DZA65_RS02935	0.53	+2.3
627,538	+	DZA65_RS02935	0.53	+0.9
627,539	-	DZA65_RS02935	0.53	+0.4
627,542	+	DZA65_RS02935	0.54	+0.3
627,542	+	DZA65_RS02935	0.54	-1.1
627,542	+	DZA65_RS02935	0.54	-0.8
627,542	+	DZA65_RS02935	0.54	-0.1
627,542	+	DZA65_RS02935	0.54	+2.2
627,542	+	DZA65_RS02935	0.54	-2.5
627,542	+	DZA65_RS02935	0.54	+0.1
627,543	-	DZA65_RS02935	0.54	+0.1
627,543	-	DZA65_RS02935	0.54	-0.9
627,543	-	DZA65_RS02935	0.54	+1.9
627,543	-	DZA65_RS02935	0.54	-0.1
627,543	-	DZA65_RS02935	0.54	-1.7
627,543	-	DZA65_RS02935	0.54	+1.0
627,543	-	DZA65_RS02935	0.54	-2.2
627,543	-	DZA65_RS02935	0.54	-1.2
627,544	+	DZA65_RS02935	0.55	-0.3
627,544	+	DZA65_RS02935	0.55	-0.8
627,544	+	DZA65_RS02935	0.55	-1.5
627,544	+	DZA65_RS02935	0.55	-0.5
627,544	+	DZA65_RS02935	0.55	-0.8
627,544	+	DZA65_RS02935	0.55	+0.9
627,544	+	DZA65_RS02935	0.55	+0.4
627,544	+	DZA65_RS02935	0.55	+1.5
627,544	+	DZA65_RS02935	0.55	-0.9
627,544	+	DZA65_RS02935	0.55	-0.4
627,544	+	DZA65_RS02935	0.55	+1.5
627,544	+	DZA65_RS02935	0.55	-0.7
627,544	+	DZA65_RS02935	0.55	+0.5
627,544	+	DZA65_RS02935	0.55	-1.2
627,545	-	DZA65_RS02935	0.55	+0.4
627,545	-	DZA65_RS02935	0.55	+1.1
627,545	-	DZA65_RS02935	0.55	+3.4
627,545	-	DZA65_RS02935	0.55	+0.7
627,545	-	DZA65_RS02935	0.55	+0.2
627,584	+	DZA65_RS02935	0.66	+2.3
627,626	+	DZA65_RS02935	0.78	-1.7
627,626	+	DZA65_RS02935	0.78	+0.1
627,626	+	DZA65_RS02935	0.78	-0.7
627,626	+	DZA65_RS02935	0.78	-1.6
627,626	+	DZA65_RS02935	0.78	-0.5
627,626	+	DZA65_RS02935	0.78	+0.3
627,626	+	DZA65_RS02935	0.78	+0.1
627,626	+	DZA65_RS02935	0.78	-2.1
627,626	+	DZA65_RS02935	0.78	-0.7
627,626	+	DZA65_RS02935	0.78	+0.4
627,626	+	DZA65_RS02935	0.78	-0.5
627,626	+	DZA65_RS02935	0.78	+0.4
627,626	+	DZA65_RS02935	0.78	-2.2
627,626	+	DZA65_RS02935	0.78	+0.3
627,626	+	DZA65_RS02935	0.78	+1.1
627,626	+	DZA65_RS02935	0.78	-4.1
627,626	+	DZA65_RS02935	0.78	+0.6
627,626	+	DZA65_RS02935	0.78	+0.8
627,626	+	DZA65_RS02935	0.78	+0.7
627,627	-	DZA65_RS02935	0.78	-1.7
627,627	-	DZA65_RS02935	0.78	-1.7
627,627	-	DZA65_RS02935	0.78	-0.9
627,627	-	DZA65_RS02935	0.78	-0.1
627,627	-	DZA65_RS02935	0.78	-0.3
627,627	-	DZA65_RS02935	0.78	+0.5
627,627	-	DZA65_RS02935	0.78	+0.1
627,627	-	DZA65_RS02935	0.78	-0.1
627,627	-	DZA65_RS02935	0.78	-0.1
627,627	-	DZA65_RS02935	0.78	-0.9
627,627	-	DZA65_RS02935	0.78	+1.1
627,627	-	DZA65_RS02935	0.78	+0.5
627,627	-	DZA65_RS02935	0.78	-0.2
627,627	-	DZA65_RS02935	0.78	+0.1
627,627	-	DZA65_RS02935	0.78	-0.9
627,627	-	DZA65_RS02935	0.78	+1.3
627,627	-	DZA65_RS02935	0.78	+0.1
627,627	-	DZA65_RS02935	0.78	+0.1
627,627	-	DZA65_RS02935	0.78	-1.9
627,627	-	DZA65_RS02935	0.78	+0.4
627,627	-	DZA65_RS02935	0.78	+2.1
627,627	-	DZA65_RS02935	0.78	-1.9
627,627	-	DZA65_RS02935	0.78	-0.9
627,627	-	DZA65_RS02935	0.78	-0.7
627,627	-	DZA65_RS02935	0.78	+1.1
627,630	+	DZA65_RS02935	0.79	+0.5
627,630	+	DZA65_RS02935	0.79	-0.6
627,630	+	DZA65_RS02935	0.79	-0.7
627,631	-	DZA65_RS02935	0.80	-0.9
627,718	+			-1.5
627,719	-			+0.5
627,719	-			-1.4
627,719	-			-0.3
627,840	-	DZA65_RS02940	0.21	-0.3

Or see this region's nucleotide sequence