Experiment: Stem-Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01735 and DZA65_RS01740 are separated by 12 nucleotides DZA65_RS01740 and DZA65_RS01745 are separated by 64 nucleotides DZA65_RS01745 and DZA65_RS01750 are separated by 276 nucleotides
DZA65_RS01735: DZA65_RS01735 - DNA topoisomerase IV subunit B, at 376,160 to 378,055
_RS01735
DZA65_RS01740: DZA65_RS01740 - LysR family transcriptional regulator, at 378,068 to 378,963
_RS01740
DZA65_RS01745: DZA65_RS01745 - NAD(P)H-dependent oxidoreductase, at 379,028 to 379,609
_RS01745
DZA65_RS01750: DZA65_RS01750 - DNA topoisomerase IV subunit A, at 379,886 to 382,162
_RS01750
Position (kb) 379
380 Strain fitness (log2 ratio) -2
-1
0
1
2 at 378.196 kb on + strand, within DZA65_RS01740 at 378.197 kb on - strand, within DZA65_RS01740 at 378.197 kb on - strand, within DZA65_RS01740 at 378.197 kb on - strand, within DZA65_RS01740 at 378.197 kb on - strand, within DZA65_RS01740 at 378.261 kb on + strand, within DZA65_RS01740 at 378.262 kb on - strand, within DZA65_RS01740 at 378.262 kb on - strand, within DZA65_RS01740 at 378.262 kb on - strand, within DZA65_RS01740 at 378.262 kb on - strand, within DZA65_RS01740 at 378.262 kb on - strand, within DZA65_RS01740 at 378.262 kb on - strand, within DZA65_RS01740 at 378.430 kb on + strand, within DZA65_RS01740 at 378.430 kb on + strand, within DZA65_RS01740 at 378.431 kb on - strand, within DZA65_RS01740 at 378.431 kb on - strand, within DZA65_RS01740 at 378.484 kb on + strand, within DZA65_RS01740 at 378.484 kb on + strand, within DZA65_RS01740 at 378.581 kb on - strand, within DZA65_RS01740 at 378.645 kb on + strand, within DZA65_RS01740 at 378.697 kb on + strand, within DZA65_RS01740 at 378.697 kb on + strand, within DZA65_RS01740 at 378.697 kb on + strand, within DZA65_RS01740 at 378.697 kb on + strand, within DZA65_RS01740 at 378.698 kb on - strand, within DZA65_RS01740 at 378.698 kb on - strand, within DZA65_RS01740 at 378.698 kb on - strand, within DZA65_RS01740 at 378.698 kb on - strand, within DZA65_RS01740 at 378.700 kb on + strand, within DZA65_RS01740 at 378.700 kb on + strand, within DZA65_RS01740 at 378.701 kb on - strand, within DZA65_RS01740 at 378.710 kb on + strand, within DZA65_RS01740 at 378.776 kb on + strand, within DZA65_RS01740 at 378.792 kb on + strand, within DZA65_RS01740 at 378.879 kb on - strand at 378.884 kb on - strand at 378.884 kb on - strand at 378.888 kb on + strand at 378.962 kb on - strand at 378.990 kb on + strand at 378.991 kb on - strand at 378.991 kb on - strand at 379.009 kb on + strand at 379.010 kb on - strand at 379.010 kb on - strand at 379.010 kb on - strand at 379.010 kb on - strand at 379.079 kb on + strand at 379.079 kb on + strand at 379.080 kb on - strand at 379.080 kb on - strand at 379.080 kb on - strand at 379.117 kb on + strand, within DZA65_RS01745 at 379.117 kb on + strand, within DZA65_RS01745 at 379.117 kb on + strand, within DZA65_RS01745 at 379.117 kb on + strand, within DZA65_RS01745 at 379.117 kb on + strand, within DZA65_RS01745 at 379.118 kb on - strand, within DZA65_RS01745 at 379.118 kb on - strand, within DZA65_RS01745 at 379.118 kb on - strand, within DZA65_RS01745 at 379.118 kb on - strand, within DZA65_RS01745 at 379.118 kb on - strand, within DZA65_RS01745 at 379.168 kb on - strand, within DZA65_RS01745 at 379.254 kb on + strand, within DZA65_RS01745 at 379.254 kb on + strand, within DZA65_RS01745 at 379.254 kb on + strand, within DZA65_RS01745 at 379.254 kb on + strand, within DZA65_RS01745 at 379.254 kb on + strand, within DZA65_RS01745 at 379.254 kb on + strand, within DZA65_RS01745 at 379.254 kb on + strand, within DZA65_RS01745 at 379.254 kb on + strand, within DZA65_RS01745 at 379.255 kb on - strand, within DZA65_RS01745 at 379.255 kb on - strand, within DZA65_RS01745 at 379.255 kb on - strand, within DZA65_RS01745 at 379.255 kb on - strand, within DZA65_RS01745 at 379.255 kb on - strand, within DZA65_RS01745 at 379.255 kb on - strand, within DZA65_RS01745 at 379.255 kb on - strand, within DZA65_RS01745 at 379.287 kb on + strand, within DZA65_RS01745 at 379.295 kb on - strand, within DZA65_RS01745 at 379.295 kb on - strand, within DZA65_RS01745 at 379.329 kb on + strand, within DZA65_RS01745 at 379.330 kb on - strand, within DZA65_RS01745 at 379.368 kb on + strand, within DZA65_RS01745 at 379.369 kb on - strand, within DZA65_RS01745 at 379.369 kb on - strand, within DZA65_RS01745 at 379.369 kb on - strand, within DZA65_RS01745 at 379.416 kb on + strand, within DZA65_RS01745 at 379.417 kb on - strand, within DZA65_RS01745 at 379.417 kb on - strand, within DZA65_RS01745 at 379.417 kb on - strand, within DZA65_RS01745 at 379.417 kb on - strand, within DZA65_RS01745 at 379.544 kb on - strand, within DZA65_RS01745 at 379.570 kb on + strand at 379.598 kb on + strand at 379.598 kb on + strand at 379.598 kb on + strand at 379.598 kb on + strand at 379.598 kb on + strand at 379.598 kb on + strand at 379.598 kb on + strand at 379.599 kb on - strand at 379.599 kb on - strand at 379.599 kb on - strand at 379.599 kb on - strand at 379.599 kb on - strand at 379.599 kb on - strand at 379.599 kb on - strand at 379.599 kb on - strand at 379.599 kb on - strand at 379.603 kb on + strand at 379.604 kb on - strand at 379.604 kb on - strand at 379.631 kb on + strand at 379.631 kb on + strand at 379.632 kb on - strand at 379.632 kb on - strand at 379.639 kb on + strand at 379.639 kb on + strand at 379.639 kb on + strand at 379.639 kb on + strand at 379.639 kb on + strand at 379.639 kb on + strand at 379.640 kb on - strand at 379.640 kb on - strand at 379.640 kb on - strand at 379.640 kb on - strand at 379.646 kb on + strand at 379.646 kb on + strand at 379.646 kb on + strand at 379.647 kb on - strand at 379.647 kb on - strand at 379.647 kb on - strand at 379.647 kb on - strand at 379.659 kb on - strand at 379.666 kb on - strand at 379.666 kb on - strand at 379.721 kb on - strand at 379.721 kb on - strand at 379.721 kb on - strand at 379.791 kb on + strand at 379.794 kb on + strand at 379.794 kb on + strand at 379.875 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Upstate remove 378,196 + DZA65_RS01740 0.14 +0.4 378,197 - DZA65_RS01740 0.14 -0.1 378,197 - DZA65_RS01740 0.14 +2.0 378,197 - DZA65_RS01740 0.14 -0.1 378,197 - DZA65_RS01740 0.14 -0.9 378,261 + DZA65_RS01740 0.22 +0.5 378,262 - DZA65_RS01740 0.22 +0.0 378,262 - DZA65_RS01740 0.22 +0.1 378,262 - DZA65_RS01740 0.22 -0.2 378,262 - DZA65_RS01740 0.22 -0.7 378,262 - DZA65_RS01740 0.22 -1.3 378,262 - DZA65_RS01740 0.22 -0.3 378,430 + DZA65_RS01740 0.40 -0.5 378,430 + DZA65_RS01740 0.40 +0.9 378,431 - DZA65_RS01740 0.41 -0.6 378,431 - DZA65_RS01740 0.41 +2.3 378,484 + DZA65_RS01740 0.46 +0.0 378,484 + DZA65_RS01740 0.46 -1.8 378,581 - DZA65_RS01740 0.57 -0.0 378,645 + DZA65_RS01740 0.64 +0.1 378,697 + DZA65_RS01740 0.70 +0.8 378,697 + DZA65_RS01740 0.70 -1.3 378,697 + DZA65_RS01740 0.70 +0.3 378,697 + DZA65_RS01740 0.70 +1.3 378,698 - DZA65_RS01740 0.70 -0.9 378,698 - DZA65_RS01740 0.70 -0.5 378,698 - DZA65_RS01740 0.70 +0.2 378,698 - DZA65_RS01740 0.70 -1.1 378,700 + DZA65_RS01740 0.71 -1.3 378,700 + DZA65_RS01740 0.71 +0.5 378,701 - DZA65_RS01740 0.71 -0.2 378,710 + DZA65_RS01740 0.72 -0.3 378,776 + DZA65_RS01740 0.79 +1.8 378,792 + DZA65_RS01740 0.81 -0.5 378,879 - +0.1 378,884 - +2.0 378,884 - -0.7 378,888 + -1.3 378,962 - -0.1 378,990 + +0.3 378,991 - +0.1 378,991 - +0.3 379,009 + +0.4 379,010 - -0.6 379,010 - -1.8 379,010 - +0.0 379,010 - -2.6 379,079 + +1.6 379,079 + -2.6 379,080 - -2.4 379,080 - -0.5 379,080 - -2.3 379,117 + DZA65_RS01745 0.15 +0.7 379,117 + DZA65_RS01745 0.15 -1.9 379,117 + DZA65_RS01745 0.15 -0.2 379,117 + DZA65_RS01745 0.15 +0.1 379,117 + DZA65_RS01745 0.15 +2.3 379,118 - DZA65_RS01745 0.15 -0.7 379,118 - DZA65_RS01745 0.15 -0.7 379,118 - DZA65_RS01745 0.15 -2.2 379,118 - DZA65_RS01745 0.15 -1.7 379,118 - DZA65_RS01745 0.15 -0.7 379,168 - DZA65_RS01745 0.24 +0.3 379,254 + DZA65_RS01745 0.39 +0.1 379,254 + DZA65_RS01745 0.39 +1.7 379,254 + DZA65_RS01745 0.39 -1.9 379,254 + DZA65_RS01745 0.39 -2.3 379,254 + DZA65_RS01745 0.39 -1.4 379,254 + DZA65_RS01745 0.39 +0.7 379,254 + DZA65_RS01745 0.39 -0.3 379,254 + DZA65_RS01745 0.39 -0.3 379,255 - DZA65_RS01745 0.39 -0.2 379,255 - DZA65_RS01745 0.39 -0.7 379,255 - DZA65_RS01745 0.39 -0.2 379,255 - DZA65_RS01745 0.39 +1.3 379,255 - DZA65_RS01745 0.39 +0.4 379,255 - DZA65_RS01745 0.39 -1.7 379,255 - DZA65_RS01745 0.39 -1.0 379,287 + DZA65_RS01745 0.45 +1.7 379,295 - DZA65_RS01745 0.46 -0.9 379,295 - DZA65_RS01745 0.46 +1.1 379,329 + DZA65_RS01745 0.52 -2.0 379,330 - DZA65_RS01745 0.52 +0.3 379,368 + DZA65_RS01745 0.58 -1.1 379,369 - DZA65_RS01745 0.59 +1.8 379,369 - DZA65_RS01745 0.59 +0.3 379,369 - DZA65_RS01745 0.59 -1.7 379,416 + DZA65_RS01745 0.67 +0.3 379,417 - DZA65_RS01745 0.67 +0.7 379,417 - DZA65_RS01745 0.67 -0.3 379,417 - DZA65_RS01745 0.67 +0.3 379,417 - DZA65_RS01745 0.67 -1.1 379,544 - DZA65_RS01745 0.89 +0.9 379,570 + -0.7 379,598 + -1.1 379,598 + -1.6 379,598 + +1.3 379,598 + -0.2 379,598 + +0.7 379,598 + +0.4 379,598 + -0.4 379,599 - +1.3 379,599 - -0.8 379,599 - -0.4 379,599 - +0.3 379,599 - +0.3 379,599 - -0.3 379,599 - -1.0 379,599 - +2.0 379,599 - -0.2 379,603 + +1.9 379,604 - -1.3 379,604 - -0.3 379,631 + -0.9 379,631 + +2.1 379,632 - +0.5 379,632 - +0.3 379,639 + -0.7 379,639 + -2.6 379,639 + -1.1 379,639 + -0.7 379,639 + -0.4 379,639 + -2.4 379,640 - +1.9 379,640 - -0.6 379,640 - -0.7 379,640 - +0.8 379,646 + +1.3 379,646 + -0.8 379,646 + -0.6 379,647 - +0.2 379,647 - -0.3 379,647 - -1.1 379,647 - -0.3 379,659 - -0.2 379,666 - +0.7 379,666 - -1.1 379,721 - +1.3 379,721 - -1.3 379,721 - -1.3 379,791 + -0.7 379,794 + -0.7 379,794 + +0.1 379,875 - -0.6
Or see this region's nucleotide sequence