Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01535

Experiment: Stem-Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01525 and DZA65_RS01530 overlap by 4 nucleotidesDZA65_RS01530 and DZA65_RS01535 are separated by 47 nucleotidesDZA65_RS01535 and DZA65_RS01540 are separated by 30 nucleotides DZA65_RS01525: DZA65_RS01525 - LPS export ABC transporter periplasmic protein LptC, at 334,253 to 334,822 _RS01525 DZA65_RS01530: DZA65_RS01530 - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 334,819 to 335,385 _RS01530 DZA65_RS01535: DZA65_RS01535 - arabinose-5-phosphate isomerase KdsD, at 335,433 to 336,419 _RS01535 DZA65_RS01540: DZA65_RS01540 - calcium/sodium antiporter, at 336,450 to 337,412 _RS01540 Position (kb) 335 336 337Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 334.870 kb on - strandat 334.870 kb on - strandat 334.870 kb on - strandat 334.870 kb on - strandat 334.923 kb on - strand, within DZA65_RS01530at 334.923 kb on - strandat 334.923 kb on - strand, within DZA65_RS01530at 334.923 kb on - strand, within DZA65_RS01530at 334.923 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.053 kb on - strand, within DZA65_RS01530at 335.053 kb on - strand, within DZA65_RS01530at 335.099 kb on + strand, within DZA65_RS01530at 335.100 kb on - strand, within DZA65_RS01530at 335.100 kb on - strand, within DZA65_RS01530at 335.100 kb on - strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.164 kb on - strand, within DZA65_RS01530at 335.164 kb on - strand, within DZA65_RS01530at 335.188 kb on + strandat 335.203 kb on - strand, within DZA65_RS01530at 335.208 kb on - strand, within DZA65_RS01530at 335.218 kb on + strand, within DZA65_RS01530at 335.218 kb on + strand, within DZA65_RS01530at 335.218 kb on + strand, within DZA65_RS01530at 335.219 kb on - strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strandat 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.259 kb on - strand, within DZA65_RS01530at 335.259 kb on - strand, within DZA65_RS01530at 335.259 kb on - strand, within DZA65_RS01530at 335.259 kb on - strand, within DZA65_RS01530at 335.259 kb on - strand, within DZA65_RS01530at 335.259 kb on - strand, within DZA65_RS01530at 335.259 kb on - strand, within DZA65_RS01530at 335.259 kb on - strand, within DZA65_RS01530at 335.259 kb on - strand, within DZA65_RS01530at 335.279 kb on - strand, within DZA65_RS01530at 335.279 kb on - strand, within DZA65_RS01530at 335.299 kb on + strand, within DZA65_RS01530at 335.358 kb on + strandat 335.393 kb on + strandat 335.393 kb on + strandat 335.393 kb on + strandat 335.393 kb on + strandat 335.393 kb on + strandat 335.393 kb on + strandat 335.393 kb on + strandat 335.393 kb on + strandat 335.393 kb on + strandat 335.393 kb on + strandat 335.393 kb on + strandat 335.393 kb on + strandat 335.393 kb on + strandat 335.393 kb on + strandat 335.393 kb on + strandat 335.394 kb on - strandat 335.394 kb on - strandat 335.394 kb on - strandat 335.394 kb on - strandat 335.394 kb on - strandat 335.394 kb on - strandat 335.394 kb on - strandat 335.394 kb on - strandat 335.394 kb on - strandat 335.394 kb on - strandat 335.394 kb on - strandat 335.394 kb on - strandat 335.394 kb on - strandat 335.394 kb on - strandat 335.434 kb on + strandat 335.434 kb on + strandat 335.434 kb on + strandat 335.434 kb on + strandat 335.434 kb on + strandat 335.435 kb on - strandat 335.435 kb on - strandat 335.435 kb on - strandat 335.435 kb on - strandat 335.435 kb on - strandat 335.435 kb on - strandat 335.435 kb on - strandat 336.443 kb on - strandat 336.443 kb on - strandat 336.443 kb on - strandat 336.452 kb on - strandat 336.479 kb on - strandat 336.479 kb on - strandat 336.587 kb on - strand, within DZA65_RS01540at 336.651 kb on + strand, within DZA65_RS01540at 336.651 kb on + strand, within DZA65_RS01540at 336.652 kb on - strand, within DZA65_RS01540at 336.662 kb on + strand, within DZA65_RS01540at 336.668 kb on + strand, within DZA65_RS01540at 336.668 kb on + strand, within DZA65_RS01540at 336.668 kb on + strand, within DZA65_RS01540at 336.669 kb on - strand, within DZA65_RS01540at 336.720 kb on - strand, within DZA65_RS01540at 336.797 kb on + strand, within DZA65_RS01540at 336.798 kb on - strand, within DZA65_RS01540at 336.801 kb on - strand, within DZA65_RS01540at 336.801 kb on - strand, within DZA65_RS01540at 336.801 kb on - strand, within DZA65_RS01540at 336.801 kb on - strand, within DZA65_RS01540at 336.805 kb on + strand, within DZA65_RS01540at 336.806 kb on - strandat 336.806 kb on - strand, within DZA65_RS01540at 336.806 kb on - strand, within DZA65_RS01540at 336.806 kb on - strandat 336.806 kb on - strand, within DZA65_RS01540at 336.861 kb on - strand, within DZA65_RS01540at 336.861 kb on - strand, within DZA65_RS01540at 336.861 kb on - strand, within DZA65_RS01540at 336.883 kb on - strand, within DZA65_RS01540at 336.996 kb on - strand, within DZA65_RS01540at 336.996 kb on - strand, within DZA65_RS01540at 336.996 kb on - strand, within DZA65_RS01540at 337.172 kb on + strand, within DZA65_RS01540at 337.173 kb on - strand, within DZA65_RS01540at 337.173 kb on - strand, within DZA65_RS01540at 337.194 kb on + strand, within DZA65_RS01540at 337.194 kb on + strand, within DZA65_RS01540at 337.194 kb on + strand, within DZA65_RS01540at 337.194 kb on + strand, within DZA65_RS01540at 337.195 kb on - strand, within DZA65_RS01540at 337.195 kb on - strand, within DZA65_RS01540at 337.279 kb on - strand, within DZA65_RS01540at 337.279 kb on - strand, within DZA65_RS01540at 337.279 kb on - strand, within DZA65_RS01540at 337.279 kb on - strand, within DZA65_RS01540at 337.279 kb on - strand, within DZA65_RS01540at 337.279 kb on - strand, within DZA65_RS01540at 337.296 kb on - strand, within DZA65_RS01540at 337.343 kb on - strandat 337.343 kb on - strandat 337.343 kb on - strandat 337.364 kb on - strandat 337.371 kb on + strandat 337.389 kb on + strandat 337.390 kb on - strandat 337.390 kb on - strandat 337.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Upstate
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334,870 - -2.1
334,870 - -0.1
334,870 - -0.3
334,870 - +0.6
334,923 - DZA65_RS01530 0.18 -1.1
334,923 - +0.9
334,923 - DZA65_RS01530 0.18 -1.7
334,923 - DZA65_RS01530 0.18 -2.3
334,923 - DZA65_RS01530 0.18 -1.2
335,022 - DZA65_RS01530 0.36 -0.9
335,022 - DZA65_RS01530 0.36 -0.8
335,022 - DZA65_RS01530 0.36 -0.3
335,022 - DZA65_RS01530 0.36 +1.3
335,022 - DZA65_RS01530 0.36 +1.1
335,022 - DZA65_RS01530 0.36 -2.7
335,022 - DZA65_RS01530 0.36 -0.1
335,022 - DZA65_RS01530 0.36 +0.3
335,022 - DZA65_RS01530 0.36 +1.0
335,022 - DZA65_RS01530 0.36 -0.7
335,022 - DZA65_RS01530 0.36 -0.8
335,022 - DZA65_RS01530 0.36 -0.1
335,022 - DZA65_RS01530 0.36 -2.2
335,022 - DZA65_RS01530 0.36 -0.3
335,022 - DZA65_RS01530 0.36 -0.3
335,053 - DZA65_RS01530 0.41 +0.3
335,053 - DZA65_RS01530 0.41 -0.6
335,099 + DZA65_RS01530 0.49 -0.7
335,100 - DZA65_RS01530 0.50 +1.9
335,100 - DZA65_RS01530 0.50 -0.4
335,100 - DZA65_RS01530 0.50 +0.3
335,101 + DZA65_RS01530 0.50 -1.1
335,101 + DZA65_RS01530 0.50 -0.3
335,101 + DZA65_RS01530 0.50 -0.2
335,101 + DZA65_RS01530 0.50 -1.8
335,101 + DZA65_RS01530 0.50 -1.1
335,101 + DZA65_RS01530 0.50 -0.7
335,101 + DZA65_RS01530 0.50 -1.1
335,101 + DZA65_RS01530 0.50 -0.3
335,101 + DZA65_RS01530 0.50 -2.4
335,101 + DZA65_RS01530 0.50 +1.3
335,101 + DZA65_RS01530 0.50 -1.7
335,101 + DZA65_RS01530 0.50 +0.3
335,101 + DZA65_RS01530 0.50 -0.3
335,101 + DZA65_RS01530 0.50 -1.7
335,101 + DZA65_RS01530 0.50 -1.2
335,101 + DZA65_RS01530 0.50 -1.4
335,101 + DZA65_RS01530 0.50 +0.3
335,101 + DZA65_RS01530 0.50 -0.6
335,101 + DZA65_RS01530 0.50 +1.7
335,101 + DZA65_RS01530 0.50 +0.3
335,101 + DZA65_RS01530 0.50 -1.5
335,101 + DZA65_RS01530 0.50 -1.3
335,101 + DZA65_RS01530 0.50 -1.3
335,102 - DZA65_RS01530 0.50 -1.3
335,102 - DZA65_RS01530 0.50 -1.7
335,102 - DZA65_RS01530 0.50 -0.7
335,102 - DZA65_RS01530 0.50 -0.3
335,102 - DZA65_RS01530 0.50 -0.3
335,102 - DZA65_RS01530 0.50 -0.5
335,102 - DZA65_RS01530 0.50 -0.6
335,102 - DZA65_RS01530 0.50 -0.9
335,102 - DZA65_RS01530 0.50 -0.4
335,102 - DZA65_RS01530 0.50 +2.3
335,102 - DZA65_RS01530 0.50 -2.7
335,102 - DZA65_RS01530 0.50 -0.6
335,102 - DZA65_RS01530 0.50 -0.2
335,102 - DZA65_RS01530 0.50 +0.1
335,102 - DZA65_RS01530 0.50 +1.0
335,102 - DZA65_RS01530 0.50 +0.9
335,102 - DZA65_RS01530 0.50 -0.1
335,102 - DZA65_RS01530 0.50 +0.1
335,102 - DZA65_RS01530 0.50 -0.7
335,102 - DZA65_RS01530 0.50 -0.7
335,102 - DZA65_RS01530 0.50 -0.2
335,102 - DZA65_RS01530 0.50 +2.4
335,102 - DZA65_RS01530 0.50 -3.1
335,102 - DZA65_RS01530 0.50 +0.9
335,102 - DZA65_RS01530 0.50 -1.2
335,102 - DZA65_RS01530 0.50 +0.9
335,102 - DZA65_RS01530 0.50 -2.1
335,102 - DZA65_RS01530 0.50 -0.1
335,102 - DZA65_RS01530 0.50 -0.9
335,102 - DZA65_RS01530 0.50 -1.1
335,102 - DZA65_RS01530 0.50 +0.5
335,164 - DZA65_RS01530 0.61 -0.5
335,164 - DZA65_RS01530 0.61 +2.5
335,188 + -1.1
335,203 - DZA65_RS01530 0.68 -0.9
335,208 - DZA65_RS01530 0.69 -0.1
335,218 + DZA65_RS01530 0.70 +0.9
335,218 + DZA65_RS01530 0.70 -0.5
335,218 + DZA65_RS01530 0.70 -1.3
335,219 - DZA65_RS01530 0.71 -1.5
335,258 + DZA65_RS01530 0.77 +1.3
335,258 + DZA65_RS01530 0.77 -0.3
335,258 + DZA65_RS01530 0.77 +0.9
335,258 + DZA65_RS01530 0.77 +0.3
335,258 + -1.1
335,258 + DZA65_RS01530 0.77 +1.3
335,258 + DZA65_RS01530 0.77 -0.9
335,258 + DZA65_RS01530 0.77 +0.0
335,258 + DZA65_RS01530 0.77 -1.5
335,258 + DZA65_RS01530 0.77 +0.3
335,258 + DZA65_RS01530 0.77 -0.8
335,258 + DZA65_RS01530 0.77 -1.5
335,258 + DZA65_RS01530 0.77 -0.7
335,259 - DZA65_RS01530 0.78 -1.3
335,259 - DZA65_RS01530 0.78 -0.3
335,259 - DZA65_RS01530 0.78 +0.1
335,259 - DZA65_RS01530 0.78 -1.1
335,259 - DZA65_RS01530 0.78 +0.3
335,259 - DZA65_RS01530 0.78 +0.6
335,259 - DZA65_RS01530 0.78 -1.1
335,259 - DZA65_RS01530 0.78 -0.7
335,259 - DZA65_RS01530 0.78 +0.5
335,279 - DZA65_RS01530 0.81 +0.3
335,279 - DZA65_RS01530 0.81 +0.1
335,299 + DZA65_RS01530 0.85 -1.5
335,358 + -0.3
335,393 + -0.3
335,393 + +0.1
335,393 + -1.4
335,393 + -0.3
335,393 + -1.5
335,393 + -1.2
335,393 + +1.7
335,393 + -0.7
335,393 + -1.5
335,393 + +0.0
335,393 + +0.3
335,393 + -0.9
335,393 + -1.5
335,393 + -1.5
335,393 + +0.1
335,394 - +0.8
335,394 - -2.1
335,394 - +1.0
335,394 - +0.1
335,394 - -1.1
335,394 - +0.2
335,394 - -0.6
335,394 - +0.5
335,394 - -1.3
335,394 - +0.3
335,394 - +0.8
335,394 - +0.5
335,394 - +2.0
335,394 - +0.9
335,434 + -0.3
335,434 + -1.5
335,434 + +1.0
335,434 + -1.3
335,434 + +0.5
335,435 - -1.7
335,435 - -0.2
335,435 - -0.5
335,435 - +1.3
335,435 - +0.7
335,435 - -0.1
335,435 - -1.1
336,443 - +0.5
336,443 - -0.7
336,443 - -1.1
336,452 - -0.3
336,479 - +0.6
336,479 - +2.0
336,587 - DZA65_RS01540 0.14 -1.7
336,651 + DZA65_RS01540 0.21 -1.5
336,651 + DZA65_RS01540 0.21 -0.3
336,652 - DZA65_RS01540 0.21 -1.7
336,662 + DZA65_RS01540 0.22 +0.2
336,668 + DZA65_RS01540 0.23 +0.3
336,668 + DZA65_RS01540 0.23 -0.3
336,668 + DZA65_RS01540 0.23 -0.0
336,669 - DZA65_RS01540 0.23 +0.4
336,720 - DZA65_RS01540 0.28 -1.2
336,797 + DZA65_RS01540 0.36 -0.9
336,798 - DZA65_RS01540 0.36 +0.6
336,801 - DZA65_RS01540 0.36 +1.3
336,801 - DZA65_RS01540 0.36 +1.0
336,801 - DZA65_RS01540 0.36 -1.5
336,801 - DZA65_RS01540 0.36 -1.5
336,805 + DZA65_RS01540 0.37 -0.7
336,806 - +0.3
336,806 - DZA65_RS01540 0.37 +0.6
336,806 - DZA65_RS01540 0.37 +0.7
336,806 - +0.1
336,806 - DZA65_RS01540 0.37 -0.7
336,861 - DZA65_RS01540 0.43 -1.5
336,861 - DZA65_RS01540 0.43 +1.6
336,861 - DZA65_RS01540 0.43 -1.1
336,883 - DZA65_RS01540 0.45 +1.3
336,996 - DZA65_RS01540 0.57 +0.2
336,996 - DZA65_RS01540 0.57 +0.9
336,996 - DZA65_RS01540 0.57 -0.7
337,172 + DZA65_RS01540 0.75 -0.8
337,173 - DZA65_RS01540 0.75 +2.5
337,173 - DZA65_RS01540 0.75 -0.7
337,194 + DZA65_RS01540 0.77 -1.1
337,194 + DZA65_RS01540 0.77 -0.5
337,194 + DZA65_RS01540 0.77 +0.9
337,194 + DZA65_RS01540 0.77 -0.7
337,195 - DZA65_RS01540 0.77 +1.4
337,195 - DZA65_RS01540 0.77 +2.3
337,279 - DZA65_RS01540 0.86 +1.6
337,279 - DZA65_RS01540 0.86 -1.1
337,279 - DZA65_RS01540 0.86 +0.6
337,279 - DZA65_RS01540 0.86 -0.3
337,279 - DZA65_RS01540 0.86 -1.3
337,279 - DZA65_RS01540 0.86 -1.2
337,296 - DZA65_RS01540 0.88 +1.5
337,343 - +1.0
337,343 - +0.1
337,343 - +0.3
337,364 - +1.1
337,371 + -0.3
337,389 + -0.1
337,390 - +0.0
337,390 - +0.6
337,390 - -1.2

Or see this region's nucleotide sequence