Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20905

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
4,513,632	-		DZA65_RS20895	0.89	-1.8
4,513,664	+				+3.1
4,513,664	+				+0.8
4,513,664	+				-1.1
4,513,664	+				+0.3
4,513,664	+				-0.5
4,513,664	+				-0.8
4,513,664	+				-0.8
4,513,664	+				-0.4
4,513,664	+				+0.5
4,513,664	+				-0.8
4,513,664	+				+1.1
4,513,665	-				-1.8
4,513,665	-				+0.7
4,513,665	-				+0.5
4,513,665	-				-0.6
4,513,665	-				+0.9
4,513,665	-				+0.8
4,513,665	-				-1.4
4,513,665	-				+1.5
4,513,665	-				+0.0
4,513,665	-				-1.3
4,513,665	-				+2.5
4,513,665	-				-0.2
4,513,665	-				-1.1
4,513,665	-				+1.5
4,513,665	-				-1.5
4,513,665	-				+0.7
4,513,665	-				+0.5
4,513,665	-				+0.2
4,513,665	-				-2.8
4,513,665	-				-0.1
4,513,665	-				+1.1
4,513,665	-				-2.3
4,513,665	-				-1.8
4,513,666	+				-0.9
4,513,666	+				+0.2
4,513,666	+				+1.1
4,513,666	+				-0.6
4,513,666	+				-1.5
4,513,667	-				-1.7
4,513,667	-				-0.8
4,513,667	-				+1.2
4,513,667	-				-0.0
4,513,667	-				+0.9
4,513,667	-				+0.3
4,513,667	-				-0.8
4,513,728	-				+0.3
4,513,728	-				+1.8
4,513,755	-				-1.1
4,513,755	-				+0.9
4,513,755	-				-0.1
4,513,768	+				-0.5
4,513,769	-				-0.5
4,513,778	-				+1.5
4,513,778	-				+0.5
4,513,819	+				-0.1
4,513,819	+				+1.9
4,513,820	-				+0.6
4,513,820	-				-1.8
4,513,828	+				+1.5
4,513,828	+				-1.6
4,513,828	+				+1.1
4,513,878	+				+1.1
4,513,941	+		DZA65_RS20900	0.20	+1.7
4,513,942	-		DZA65_RS20900	0.20	-1.8
4,513,942	-		DZA65_RS20900	0.20	-0.2
4,513,942	-		DZA65_RS20900	0.20	-0.4
4,513,942	-		DZA65_RS20900	0.20	+0.3
4,513,942	-		DZA65_RS20900	0.20	-2.2
4,513,942	-		DZA65_RS20900	0.20	-1.5
4,513,942	-		DZA65_RS20900	0.20	-0.5
4,513,944	-		DZA65_RS20900	0.21	-1.3
4,513,963	+		DZA65_RS20900	0.27	-3.7
4,513,964	-		DZA65_RS20900	0.27	+0.3
4,513,964	-		DZA65_RS20900	0.27	+1.2
4,513,984	+		DZA65_RS20900	0.33	+0.9
4,514,004	+		DZA65_RS20900	0.40	+1.2
4,514,004	+		DZA65_RS20900	0.40	-0.5
4,514,004	+		DZA65_RS20900	0.40	+0.6
4,514,005	-		DZA65_RS20900	0.40	-0.8
4,514,126	-		DZA65_RS20900	0.78	-2.0
4,514,126	-		DZA65_RS20900	0.78	+1.2
4,514,126	-		DZA65_RS20900	0.78	-1.3
4,514,161	-		DZA65_RS20900	0.88	-0.5
4,514,161	-		DZA65_RS20900	0.88	-0.5
4,514,209	+				-0.8
4,514,220	-				+1.3
4,514,241	+				-1.3
4,514,242	-				+0.5
4,514,264	+				-0.1
4,514,264	+				-1.5
4,514,264	+				+0.5
4,514,264	+				+0.2
4,514,265	-				-2.4
4,514,308	+				-1.8
4,514,309	-				-1.2
4,514,309	-				-1.1
4,514,309	-				+0.3
4,514,309	-				-0.5
4,514,348	-				+1.0
4,514,356	+				-1.3
4,514,356	+				-1.7
4,514,356	+				-0.1
4,514,356	+				+0.8
4,514,356	+				+0.1
4,514,357	-				-0.3
4,514,357	-				+0.4
4,514,357	-				-1.3
4,514,357	-				-0.2
4,514,357	-				-0.1
4,514,357	-				+0.3
4,514,362	+				-0.5
4,514,412	-				-1.0
4,514,412	-				-2.0
4,514,508	+				-0.1
4,514,508	+				+0.5
4,514,508	+				-0.4
4,514,508	+				+1.1
4,514,862	+		DZA65_RS20905	0.21	-0.1
4,515,654	+				+0.5
4,515,658	-		DZA65_RS20905	0.74	-1.3
4,515,798	+		DZA65_RS20905	0.84	-1.0
4,515,869	+		DZA65_RS20905	0.89	-0.5
4,515,877	-		DZA65_RS20905	0.89	-0.8
4,516,012	-				+0.5
4,516,024	+				-1.6
4,516,084	+				-2.8
4,516,085	-				-0.4
4,516,085	-				-1.1
4,516,085	-				+0.5
4,516,085	-				-1.0
4,516,112	+				-2.3
4,516,112	+				-2.2
4,516,112	+				-1.1
4,516,112	+				+0.6
4,516,112	+				+0.5
4,516,112	+				+1.0
4,516,112	+				-0.1
4,516,112	+				-0.5
4,516,113	-				-2.5
4,516,113	-				+0.5
4,516,113	-				+1.9
4,516,113	-				-0.8
4,516,113	-				-0.6
4,516,113	-				+1.0
4,516,132	-				-1.4
4,516,132	-				+1.5
4,516,151	+				-0.5
4,516,152	-				+0.2
4,516,152	-				-0.9
4,516,152	-				-2.2
4,516,164	+				-1.5
4,516,165	-				-1.8
4,516,165	-				-1.7
4,516,181	+				-1.1
4,516,181	+				-0.7
4,516,181	+				-0.6
4,516,181	+				-0.3
4,516,181	+				+1.5
4,516,239	-				-1.1
4,516,271	+				+0.9
4,516,272	-				+1.5
4,516,272	-				+1.2
4,516,298	+				-1.7
4,516,299	-				-2.4
4,516,340	+				-1.5
4,516,379	-		DZA65_RS20910	0.11	-1.7
4,516,418	+		DZA65_RS20910	0.13	-0.8
4,516,419	-		DZA65_RS20910	0.13	-0.8
4,516,419	-		DZA65_RS20910	0.13	-1.0
4,516,419	-		DZA65_RS20910	0.13	-3.8
4,516,419	-		DZA65_RS20910	0.13	+2.5
4,516,419	-		DZA65_RS20910	0.13	-0.8
4,516,419	-		DZA65_RS20910	0.13	-1.4
4,516,436	+		DZA65_RS20910	0.13	-0.5
4,516,436	+		DZA65_RS20910	0.13	+0.6
4,516,436	+		DZA65_RS20910	0.13	-0.8
4,516,436	+		DZA65_RS20910	0.13	+1.5
4,516,450	+		DZA65_RS20910	0.14	+0.8
4,516,491	+		DZA65_RS20910	0.16	-2.1
4,516,491	+		DZA65_RS20910	0.16	-0.8
4,516,491	+		DZA65_RS20910	0.16	-1.5
4,516,491	+		DZA65_RS20910	0.16	-1.1
4,516,491	+		DZA65_RS20910	0.16	+0.5
4,516,492	-		DZA65_RS20910	0.16	-1.1
4,516,492	-		DZA65_RS20910	0.16	-0.3
4,516,492	-		DZA65_RS20910	0.16	-0.1
4,516,492	-		DZA65_RS20910	0.16	-1.5
4,516,492	-		DZA65_RS20910	0.16	-1.7
4,516,670	+		DZA65_RS20910	0.23	+0.5
4,516,670	+		DZA65_RS20910	0.23	-0.7
4,516,670	+		DZA65_RS20910	0.23	-0.3
4,516,670	+		DZA65_RS20910	0.23	-0.8
4,516,670	+		DZA65_RS20910	0.23	+1.5
4,516,670	+		DZA65_RS20910	0.23	-0.8
4,516,670	+		DZA65_RS20910	0.23	+2.7
4,516,671	-		DZA65_RS20910	0.23	+0.1
4,516,671	-		DZA65_RS20910	0.23	-1.7
4,516,772	+				+0.5
4,516,772	+		DZA65_RS20910	0.27	-0.1
4,516,772	+		DZA65_RS20910	0.27	-1.1
4,516,772	+		DZA65_RS20910	0.27	-1.3
4,516,772	+		DZA65_RS20910	0.27	+0.8
4,516,772	+		DZA65_RS20910	0.27	+1.2
4,516,772	+		DZA65_RS20910	0.27	-2.2
4,516,772	+		DZA65_RS20910	0.27	-0.6
4,516,772	+		DZA65_RS20910	0.27	-2.1
4,516,772	+		DZA65_RS20910	0.27	-0.7
4,516,772	+		DZA65_RS20910	0.27	-1.3
4,516,772	+		DZA65_RS20910	0.27	-0.5
4,516,772	+		DZA65_RS20910	0.27	+0.8
4,516,772	+		DZA65_RS20910	0.27	+0.0
4,516,772	+		DZA65_RS20910	0.27	+0.6
4,516,772	+		DZA65_RS20910	0.27	+0.5
4,516,772	+		DZA65_RS20910	0.27	-2.1
4,516,772	+		DZA65_RS20910	0.27	-0.5
4,516,773	-		DZA65_RS20910	0.27	-2.0
4,516,773	-		DZA65_RS20910	0.27	+1.3
4,516,773	-		DZA65_RS20910	0.27	-0.6
4,516,773	-		DZA65_RS20910	0.27	-1.3
4,516,773	-		DZA65_RS20910	0.27	+0.5
4,516,773	-		DZA65_RS20910	0.27	-0.8
4,516,773	-		DZA65_RS20910	0.27	-2.0
4,516,773	-		DZA65_RS20910	0.27	-1.3
4,516,773	-		DZA65_RS20910	0.27	+0.8
4,516,773	-		DZA65_RS20910	0.27	-2.0
4,516,773	-				-1.0
4,516,773	-		DZA65_RS20910	0.27	-1.1
4,516,773	-		DZA65_RS20910	0.27	+0.6
4,516,775	+		DZA65_RS20910	0.27	+1.3
4,516,775	+		DZA65_RS20910	0.27	-1.3
4,516,775	+		DZA65_RS20910	0.27	-0.5
4,516,803	+		DZA65_RS20910	0.28	-0.1
4,516,803	+		DZA65_RS20910	0.28	-1.3
4,516,851	+		DZA65_RS20910	0.30	-0.5
4,516,851	+		DZA65_RS20910	0.30	-1.8
4,516,853	+		DZA65_RS20910	0.30	+0.2
4,516,853	+		DZA65_RS20910	0.30	-0.7
4,516,853	+		DZA65_RS20910	0.30	+0.5
4,516,853	+		DZA65_RS20910	0.30	-2.0
4,516,853	+				-1.7
4,516,854	-		DZA65_RS20910	0.30	-1.7
4,516,854	-		DZA65_RS20910	0.30	-1.9
4,516,854	-		DZA65_RS20910	0.30	+0.2
4,516,854	-		DZA65_RS20910	0.30	+0.4
4,516,854	-		DZA65_RS20910	0.30	+3.8
4,516,873	+		DZA65_RS20910	0.31	-0.7
4,516,873	+		DZA65_RS20910	0.31	+1.2
4,516,873	+		DZA65_RS20910	0.31	-0.1
4,516,873	+		DZA65_RS20910	0.31	+0.9
4,516,873	+		DZA65_RS20910	0.31	-0.7
4,516,873	+		DZA65_RS20910	0.31	+0.9
4,516,873	+		DZA65_RS20910	0.31	-0.5
4,516,874	-		DZA65_RS20910	0.31	-1.3
4,516,874	-		DZA65_RS20910	0.31	-0.3
4,516,874	-		DZA65_RS20910	0.31	+2.1
4,516,874	-		DZA65_RS20910	0.31	+0.3
4,516,874	-		DZA65_RS20910	0.31	+0.9
4,516,874	-		DZA65_RS20910	0.31	+0.5
4,516,874	-		DZA65_RS20910	0.31	-2.4
4,516,895	+		DZA65_RS20910	0.32	+0.2
4,516,895	+		DZA65_RS20910	0.32	-0.1
4,516,895	+		DZA65_RS20910	0.32	-0.8
4,516,895	+		DZA65_RS20910	0.32	+0.1
4,516,905	+		DZA65_RS20910	0.32	+0.0
4,516,905	+		DZA65_RS20910	0.32	+0.5
4,516,906	-		DZA65_RS20910	0.32	+0.3
4,516,906	-		DZA65_RS20910	0.32	-2.2
4,516,970	+		DZA65_RS20910	0.35	+1.2
4,516,970	+		DZA65_RS20910	0.35	+0.5
4,516,970	+		DZA65_RS20910	0.35	+1.5
4,516,970	+		DZA65_RS20910	0.35	-0.1
4,516,970	+		DZA65_RS20910	0.35	-0.3
4,516,970	+		DZA65_RS20910	0.35	-0.5
4,516,970	+		DZA65_RS20910	0.35	+1.8
4,516,970	+		DZA65_RS20910	0.35	-0.1
4,516,970	+		DZA65_RS20910	0.35	+2.1
4,516,970	+		DZA65_RS20910	0.35	-1.3
4,516,970	+		DZA65_RS20910	0.35	+0.5
4,516,970	+		DZA65_RS20910	0.35	+0.6
4,516,970	+		DZA65_RS20910	0.35	+0.7
4,516,971	-		DZA65_RS20910	0.35	-1.5
4,516,971	-		DZA65_RS20910	0.35	-0.1
4,516,971	-		DZA65_RS20910	0.35	-0.1
4,516,971	-		DZA65_RS20910	0.35	-0.7
4,516,971	-		DZA65_RS20910	0.35	-0.5
4,516,971	-		DZA65_RS20910	0.35	-1.3
4,516,971	-		DZA65_RS20910	0.35	+0.5
4,516,971	-		DZA65_RS20910	0.35	-1.4
4,516,971	-		DZA65_RS20910	0.35	-1.7
4,516,971	-		DZA65_RS20910	0.35	+0.2
4,516,971	-		DZA65_RS20910	0.35	-0.5
4,516,971	-		DZA65_RS20910	0.35	-0.0
4,516,971	-		DZA65_RS20910	0.35	-0.2