Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15700

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,408,813	+				+0.9
3,408,813	+				-2.3
3,408,813	+				+0.6
3,408,813	+				-3.0
3,408,813	+				-1.6
3,408,814	-				-1.1
3,408,814	-				-0.5
3,408,814	-				-0.6
3,408,814	-				+0.2
3,408,814	-				+0.6
3,408,830	+				+0.8
3,408,831	-				-1.1
3,408,837	+				+0.1
3,408,837	+				-1.4
3,408,837	+				-0.8
3,408,838	-				-0.1
3,408,838	-				-1.0
3,408,838	-				-0.1
3,408,838	-				-0.8
3,408,838	-				-0.0
3,408,838	-				-1.8
3,408,838	-				-0.4
3,408,866	+				-0.6
3,408,867	-				+0.5
3,408,874	-				-1.8
3,408,874	-				-1.6
3,408,874	-				+0.2
3,408,874	-				-0.8
3,408,937	+				+0.3
3,408,999	-				-1.0
3,408,999	-				-1.8
3,408,999	-				-2.7
3,409,030	+				+0.7
3,409,031	-				-2.3
3,409,031	-				+0.7
3,409,031	-				-0.5
3,409,052	-				+0.5
3,409,106	-				-0.5
3,409,106	-				+2.9
3,409,106	-				+0.3
3,409,106	-				-1.7
3,409,106	-				-2.3
3,409,111	-				-0.3
3,409,111	-				+1.3
3,409,111	-				-0.5
3,409,111	-				+0.7
3,409,133	+				-2.0
3,409,133	+				-1.6
3,409,133	+				-0.4
3,409,133	+				+0.1
3,409,134	-				+0.2
3,409,134	-				-1.1
3,409,134	-				-1.6
3,409,135	+				+0.2
3,409,136	-				-0.6
3,409,136	-				-1.1
3,409,148	-				+0.8
3,409,151	-				+0.4
3,409,151	-				+0.7
3,409,213	+				-2.0
3,409,229	-		DZA65_RS15695	0.12	+0.9
3,409,443	+		DZA65_RS15695	0.46	-1.4
3,409,443	+		DZA65_RS15695	0.46	-0.8
3,409,443	+		DZA65_RS15695	0.46	+2.5
3,409,444	-		DZA65_RS15695	0.47	-0.0
3,409,444	-		DZA65_RS15695	0.47	+1.6
3,409,444	-		DZA65_RS15695	0.47	-0.2
3,409,444	-		DZA65_RS15695	0.47	+0.3
3,409,495	+		DZA65_RS15695	0.55	-0.3
3,409,495	+		DZA65_RS15695	0.55	+0.2
3,409,495	+		DZA65_RS15695	0.55	+1.0
3,409,496	-		DZA65_RS15695	0.55	-0.8
3,409,496	-		DZA65_RS15695	0.55	-0.0
3,409,496	-		DZA65_RS15695	0.55	-1.4
3,409,519	+		DZA65_RS15695	0.59	-0.1
3,409,520	-		DZA65_RS15695	0.59	+0.8
3,409,520	-		DZA65_RS15695	0.59	-0.8
3,409,520	-		DZA65_RS15695	0.59	-0.4
3,409,548	+		DZA65_RS15695	0.63	-1.4
3,409,548	+		DZA65_RS15695	0.63	-0.4
3,409,548	+		DZA65_RS15695	0.63	+1.5
3,409,548	+		DZA65_RS15695	0.63	-1.6
3,409,568	-		DZA65_RS15695	0.67	-0.4
3,409,623	+		DZA65_RS15695	0.76	+0.7
3,409,624	-		DZA65_RS15695	0.76	+0.8
3,409,624	-		DZA65_RS15695	0.76	+2.5
3,409,716	+				-0.1
3,409,716	+				-0.1
3,409,716	+				-1.6
3,409,854	+		DZA65_RS15700	0.12	-2.0
3,409,855	-		DZA65_RS15700	0.12	-1.0
3,409,907	+		DZA65_RS15700	0.25	-1.5
3,409,908	-		DZA65_RS15700	0.25	-0.9
3,409,940	+		DZA65_RS15700	0.33	+0.1
3,410,042	+		DZA65_RS15700	0.58	+0.0
3,410,042	+		DZA65_RS15700	0.58	-1.8
3,410,043	-		DZA65_RS15700	0.59	+1.2
3,410,043	-		DZA65_RS15700	0.59	+0.5
3,410,046	+		DZA65_RS15700	0.59	+1.6
3,410,046	+		DZA65_RS15700	0.59	-1.6
3,410,046	+		DZA65_RS15700	0.59	-0.1
3,410,046	+		DZA65_RS15700	0.59	-1.8
3,410,047	-		DZA65_RS15700	0.60	-1.6
3,410,047	-		DZA65_RS15700	0.60	-0.4
3,410,047	-		DZA65_RS15700	0.60	+0.5
3,410,106	+		DZA65_RS15700	0.74	-0.7
3,410,200	+				-0.5
3,410,200	+				-3.3
3,410,200	+				-0.2
3,410,200	+				-0.3
3,410,200	+				-0.4
3,410,201	-				-0.0
3,410,201	-				-1.0
3,410,201	-				+1.5
3,410,223	+				-1.4
3,410,224	-				+0.6
3,410,224	-				+1.4
3,410,224	-				+1.5
3,410,224	-				+0.5
3,410,230	+				-0.4
3,410,230	+				+0.5
3,410,230	+				+0.0
3,410,230	+				+1.2
3,410,231	-				-0.6
3,410,231	-				-1.4
3,410,231	-				+1.2
3,410,269	+				+2.3
3,410,365	+				-0.0
3,410,365	+				-2.1
3,410,365	+				+1.0
3,410,365	+				-0.8
3,410,365	+				+0.5
3,410,366	-				-1.8
3,410,366	-				-0.4
3,410,418	-				-2.4
3,410,480	+				-2.1
3,410,575	+		DZA65_RS15705	0.17	-1.4
3,410,575	+		DZA65_RS15705	0.17	-0.8
3,410,576	-		DZA65_RS15705	0.17	-2.0
3,410,602	+		DZA65_RS15705	0.19	-0.4
3,410,602	+		DZA65_RS15705	0.19	-0.9
3,410,602	+		DZA65_RS15705	0.19	+1.2
3,410,602	+		DZA65_RS15705	0.19	-0.9
3,410,602	+		DZA65_RS15705	0.19	+0.1
3,410,602	+		DZA65_RS15705	0.19	+0.8
3,410,602	+		DZA65_RS15705	0.19	-0.3
3,410,602	+		DZA65_RS15705	0.19	-0.4
3,410,602	+		DZA65_RS15705	0.19	+0.3
3,410,602	+		DZA65_RS15705	0.19	+0.8
3,410,602	+		DZA65_RS15705	0.19	-1.1
3,410,602	+		DZA65_RS15705	0.19	-1.0
3,410,602	+		DZA65_RS15705	0.19	-0.4
3,410,602	+		DZA65_RS15705	0.19	-2.4
3,410,602	+		DZA65_RS15705	0.19	-1.6
3,410,602	+		DZA65_RS15705	0.19	-1.5
3,410,602	+		DZA65_RS15705	0.19	-2.9
3,410,602	+		DZA65_RS15705	0.19	-0.3
3,410,603	-		DZA65_RS15705	0.20	+0.4
3,410,603	-		DZA65_RS15705	0.20	+0.2
3,410,603	-		DZA65_RS15705	0.20	+1.1
3,410,603	-		DZA65_RS15705	0.20	+0.2
3,410,603	-		DZA65_RS15705	0.20	-0.4
3,410,603	-		DZA65_RS15705	0.20	+0.2
3,410,603	-		DZA65_RS15705	0.20	-1.4
3,410,603	-		DZA65_RS15705	0.20	+0.2
3,410,603	-		DZA65_RS15705	0.20	+0.3
3,410,603	-		DZA65_RS15705	0.20	+0.6
3,410,603	-		DZA65_RS15705	0.20	-0.1
3,410,603	-		DZA65_RS15705	0.20	-1.6
3,410,603	-		DZA65_RS15705	0.20	+0.0
3,410,603	-		DZA65_RS15705	0.20	-0.1
3,410,603	-		DZA65_RS15705	0.20	+0.2
3,410,661	+		DZA65_RS15705	0.24	+1.0
3,410,662	-		DZA65_RS15705	0.24	-2.3
3,410,662	-		DZA65_RS15705	0.24	+2.2
3,410,662	-		DZA65_RS15705	0.24	-0.8
3,410,666	+		DZA65_RS15705	0.25	-0.8
3,410,666	+		DZA65_RS15705	0.25	-1.6
3,410,666	+		DZA65_RS15705	0.25	+0.9
3,410,667	-		DZA65_RS15705	0.25	-0.4
3,410,764	+		DZA65_RS15705	0.33	-0.7
3,410,765	-		DZA65_RS15705	0.33	+1.5
3,410,765	-		DZA65_RS15705	0.33	+0.8
3,410,851	+		DZA65_RS15705	0.40	-0.6
3,410,851	+		DZA65_RS15705	0.40	-0.1
3,410,851	+		DZA65_RS15705	0.40	-1.0
3,410,851	+		DZA65_RS15705	0.40	+0.9
3,410,852	-		DZA65_RS15705	0.40	+0.7
3,410,852	-		DZA65_RS15705	0.40	-1.0
3,410,852	-		DZA65_RS15705	0.40	-0.5
3,410,852	-		DZA65_RS15705	0.40	-1.3
3,410,852	-		DZA65_RS15705	0.40	+0.8
3,410,867	+		DZA65_RS15705	0.41	-1.8
3,410,867	+		DZA65_RS15705	0.41	-1.1
3,410,935	+		DZA65_RS15705	0.47	+1.5
3,410,935	+		DZA65_RS15705	0.47	+0.1
3,410,935	+		DZA65_RS15705	0.47	+2.6
3,410,936	-		DZA65_RS15705	0.47	+0.2
3,410,936	-		DZA65_RS15705	0.47	+0.2
3,411,071	+		DZA65_RS15705	0.58	+1.2
3,411,072	-		DZA65_RS15705	0.58	+0.2
3,411,083	+		DZA65_RS15705	0.59	-3.2
3,411,084	-		DZA65_RS15705	0.59	-2.3
3,411,178	+		DZA65_RS15705	0.67	+0.3
3,411,178	+		DZA65_RS15705	0.67	-0.9
3,411,178	+		DZA65_RS15705	0.67	-1.6
3,411,178	+		DZA65_RS15705	0.67	+0.3
3,411,179	-		DZA65_RS15705	0.67	-0.1
3,411,179	-		DZA65_RS15705	0.67	-0.4
3,411,179	-		DZA65_RS15705	0.67	-0.8
3,411,179	-		DZA65_RS15705	0.67	-1.4
3,411,179	-				-1.8