Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15000

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,274,042	-		DZA65_RS14995	0.40	-0.4
3,274,073	+		DZA65_RS14995	0.43	-3.0
3,274,074	-		DZA65_RS14995	0.43	-0.4
3,274,074	-		DZA65_RS14995	0.43	+0.7
3,274,086	+		DZA65_RS14995	0.44	-0.6
3,274,105	+		DZA65_RS14995	0.45	-1.5
3,274,105	+		DZA65_RS14995	0.45	-2.1
3,274,105	+		DZA65_RS14995	0.45	-2.6
3,274,106	-		DZA65_RS14995	0.46	-0.5
3,274,106	-		DZA65_RS14995	0.46	-2.8
3,274,111	-				+2.4
3,274,111	-		DZA65_RS14995	0.46	-0.9
3,274,161	+		DZA65_RS14995	0.50	+1.4
3,274,161	+		DZA65_RS14995	0.50	-1.5
3,274,162	-		DZA65_RS14995	0.50	+0.4
3,274,181	-		DZA65_RS14995	0.52	-1.5
3,274,181	-		DZA65_RS14995	0.52	+0.1
3,274,195	+		DZA65_RS14995	0.53	+0.3
3,274,195	+		DZA65_RS14995	0.53	+2.7
3,274,195	+		DZA65_RS14995	0.53	+1.7
3,274,196	-		DZA65_RS14995	0.53	+1.0
3,274,218	+		DZA65_RS14995	0.55	-1.2
3,274,218	+		DZA65_RS14995	0.55	-0.1
3,274,219	-		DZA65_RS14995	0.55	-1.7
3,274,241	+		DZA65_RS14995	0.57	+0.4
3,274,241	+		DZA65_RS14995	0.57	-0.2
3,274,241	+		DZA65_RS14995	0.57	+0.8
3,274,241	+		DZA65_RS14995	0.57	-1.7
3,274,241	+		DZA65_RS14995	0.57	-0.1
3,274,242	-		DZA65_RS14995	0.57	-0.9
3,274,242	-		DZA65_RS14995	0.57	+0.5
3,274,242	-		DZA65_RS14995	0.57	-0.4
3,274,242	-		DZA65_RS14995	0.57	+0.1
3,274,242	-		DZA65_RS14995	0.57	-1.3
3,274,242	-		DZA65_RS14995	0.57	-1.3
3,274,242	-		DZA65_RS14995	0.57	-0.1
3,274,242	-		DZA65_RS14995	0.57	+0.7
3,274,244	+		DZA65_RS14995	0.57	+0.7
3,274,342	+		DZA65_RS14995	0.65	-0.5
3,274,343	-		DZA65_RS14995	0.65	-1.6
3,274,471	+		DZA65_RS14995	0.76	-1.1
3,274,471	+		DZA65_RS14995	0.76	+0.7
3,274,471	+		DZA65_RS14995	0.76	-0.5
3,274,472	-		DZA65_RS14995	0.76	-2.9
3,274,472	-		DZA65_RS14995	0.76	-2.2
3,274,472	-		DZA65_RS14995	0.76	-0.1
3,274,472	-		DZA65_RS14995	0.76	-0.5
3,274,472	-		DZA65_RS14995	0.76	-1.7
3,274,472	-		DZA65_RS14995	0.76	-0.1
3,274,472	-		DZA65_RS14995	0.76	-2.1
3,274,483	-		DZA65_RS14995	0.77	+0.3
3,274,549	+		DZA65_RS14995	0.82	+0.1
3,274,549	+		DZA65_RS14995	0.82	+0.1
3,274,549	+		DZA65_RS14995	0.82	+0.8
3,274,549	+		DZA65_RS14995	0.82	-1.1
3,274,549	+		DZA65_RS14995	0.82	-1.5
3,274,550	-		DZA65_RS14995	0.82	-0.5
3,274,550	-		DZA65_RS14995	0.82	-0.9
3,274,550	-		DZA65_RS14995	0.82	+0.5
3,274,550	-		DZA65_RS14995	0.82	-0.5
3,274,550	-		DZA65_RS14995	0.82	-2.5
3,274,550	-		DZA65_RS14995	0.82	-0.5
3,274,550	-		DZA65_RS14995	0.82	-1.0
3,274,550	-		DZA65_RS14995	0.82	-1.3
3,274,585	-		DZA65_RS14995	0.85	-0.5
3,274,608	-		DZA65_RS14995	0.87	-0.9
3,274,634	+		DZA65_RS14995	0.89	-2.3
3,274,634	+		DZA65_RS14995	0.89	-1.7
3,274,635	-		DZA65_RS14995	0.89	+0.1
3,274,635	-		DZA65_RS14995	0.89	-0.3
3,274,687	-				-1.0
3,274,765	+				-3.1
3,274,866	-				+0.7
3,274,882	+				+0.1
3,274,882	+				-1.0
3,274,882	+				+1.0
3,274,883	-				+1.1
3,274,883	-				-1.7
3,274,898	+				+0.5
3,274,898	+				-2.2
3,274,898	+				+0.4
3,274,899	-				+1.1
3,274,899	-				-0.9
3,274,899	-				+0.3
3,274,899	-				-0.2
3,274,899	-				-1.7
3,274,914	+				-2.1
3,274,914	+				+0.6
3,274,914	+				+0.1
3,274,914	+				-1.6
3,274,914	+				+1.1
3,274,914	+				-1.1
3,274,914	+				-2.0
3,274,914	+				-1.2
3,274,915	-				-0.9
3,274,915	-				-4.2
3,274,915	-				+0.1
3,274,915	-				-1.2
3,274,915	-				-0.4
3,274,915	-				+0.5
3,274,915	-				+1.3
3,274,915	-				+2.1
3,274,915	-				+0.3
3,274,915	-				-2.3
3,274,963	-				-2.2
3,275,113	+		DZA65_RS15000	0.33	-2.5
3,275,113	+		DZA65_RS15000	0.33	-0.9
3,275,113	+		DZA65_RS15000	0.33	-3.4
3,275,113	+		DZA65_RS15000	0.33	-0.2
3,275,113	+		DZA65_RS15000	0.33	-1.2
3,275,113	+		DZA65_RS15000	0.33	-0.7
3,275,113	+		DZA65_RS15000	0.33	+1.8
3,275,113	+		DZA65_RS15000	0.33	+0.5
3,275,113	+		DZA65_RS15000	0.33	-0.7
3,275,113	+		DZA65_RS15000	0.33	+0.1
3,275,113	+		DZA65_RS15000	0.33	-2.6
3,275,114	-		DZA65_RS15000	0.33	+0.3
3,275,114	-		DZA65_RS15000	0.33	-3.0
3,275,114	-		DZA65_RS15000	0.33	-1.2
3,275,114	-		DZA65_RS15000	0.33	+1.1
3,275,114	-		DZA65_RS15000	0.33	+0.2
3,275,114	-		DZA65_RS15000	0.33	-1.7
3,275,114	-		DZA65_RS15000	0.33	-0.1
3,275,114	-		DZA65_RS15000	0.33	-1.2
3,275,114	-		DZA65_RS15000	0.33	-0.2
3,275,165	-		DZA65_RS15000	0.42	+1.1
3,275,165	-		DZA65_RS15000	0.42	-1.5
3,275,167	+		DZA65_RS15000	0.42	-1.1
3,275,167	+		DZA65_RS15000	0.42	-1.5
3,275,167	+		DZA65_RS15000	0.42	+1.8
3,275,167	+		DZA65_RS15000	0.42	+0.8
3,275,191	+		DZA65_RS15000	0.46	-1.6
3,275,191	+		DZA65_RS15000	0.46	-1.0
3,275,192	-		DZA65_RS15000	0.46	-2.6
3,275,249	+		DZA65_RS15000	0.56	-0.5
3,275,249	+				-1.5
3,275,249	+		DZA65_RS15000	0.56	+0.2
3,275,249	+		DZA65_RS15000	0.56	-0.5
3,275,286	+		DZA65_RS15000	0.62	+1.3
3,275,371	-		DZA65_RS15000	0.76	-0.5
3,275,443	+		DZA65_RS15000	0.88	+0.3
3,275,444	-		DZA65_RS15000	0.88	-1.6
3,275,460	+				-0.7
3,275,460	+				+0.1
3,275,461	-				-0.2
3,275,538	+				+1.1
3,275,538	+				-0.5
3,275,538	+				-2.5
3,275,538	+				+0.5
3,275,539	-				-0.3
3,275,539	-				+0.7
3,275,572	+				-2.2
3,275,572	+				+1.1
3,275,572	+				+0.2
3,275,572	+				-1.9
3,275,572	+				-1.0
3,275,572	+				-0.5
3,275,573	-				+0.1
3,275,573	-				+0.2
3,275,573	-				-1.2
3,275,573	-				-3.1
3,275,628	+				+2.2
3,275,691	+				-1.5
3,275,696	+				-0.7
3,275,696	+				+0.1
3,275,696	+				+1.6
3,275,696	+				+0.5
3,275,696	+				+1.2
3,275,697	-				-1.5
3,275,697	-				-1.1
3,275,724	-				+0.4
3,275,847	+		DZA65_RS15005	0.18	-1.5
3,275,874	+				-1.9
3,275,874	+		DZA65_RS15005	0.20	-0.9
3,275,874	+		DZA65_RS15005	0.20	+0.5
3,275,874	+		DZA65_RS15005	0.20	-0.3
3,275,875	-		DZA65_RS15005	0.20	-0.1
3,276,089	+		DZA65_RS15005	0.35	+0.4
3,276,096	-		DZA65_RS15005	0.35	+0.5
3,276,110	+		DZA65_RS15005	0.36	-0.7
3,276,110	+		DZA65_RS15005	0.36	-2.3
3,276,111	-		DZA65_RS15005	0.36	+0.6
3,276,111	-		DZA65_RS15005	0.36	-0.6
3,276,111	-		DZA65_RS15005	0.36	-2.1
3,276,165	-		DZA65_RS15005	0.40	+0.1
3,276,270	+		DZA65_RS15005	0.47	+0.1
3,276,271	-		DZA65_RS15005	0.47	+0.5
3,276,276	-		DZA65_RS15005	0.47	-0.7
3,276,342	+		DZA65_RS15005	0.52	+0.6
3,276,342	+		DZA65_RS15005	0.52	+1.5
3,276,463	+		DZA65_RS15005	0.60	-0.5
3,276,463	+		DZA65_RS15005	0.60	-2.1
3,276,463	+		DZA65_RS15005	0.60	+1.2
3,276,464	-		DZA65_RS15005	0.60	+0.1
3,276,477	+		DZA65_RS15005	0.61	+0.4
3,276,477	+		DZA65_RS15005	0.61	-1.5
3,276,478	-		DZA65_RS15005	0.61	-0.7