Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14030

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,007,568	+				+0.1
3,007,568	+				-3.5
3,007,569	-				-1.2
3,007,597	+				-1.7
3,007,597	+				-1.7
3,007,597	+				-0.2
3,007,597	+				-1.5
3,007,623	+				-0.3
3,007,623	+				-1.0
3,007,623	+				-2.1
3,007,623	+				-1.8
3,007,623	+				-0.5
3,007,623	+				+0.7
3,007,623	+				-0.9
3,007,623	+				-1.6
3,007,627	+				-1.5
3,007,627	+				-0.9
3,007,627	+				+0.5
3,007,640	+				+0.9
3,007,688	+				+1.8
3,007,705	-				+1.1
3,007,993	+		DZA65_RS14020	0.87	+0.9
3,008,014	+				-2.3
3,008,034	+				-2.8
3,008,035	-				-4.6
3,008,049	-				-2.3
3,008,114	+		DZA65_RS14025	0.18	-2.0
3,008,114	+		DZA65_RS14025	0.18	-1.2
3,008,114	+		DZA65_RS14025	0.18	-1.5
3,008,115	-		DZA65_RS14025	0.18	+0.5
3,008,115	-		DZA65_RS14025	0.18	-4.8
3,008,115	-		DZA65_RS14025	0.18	-0.9
3,008,115	-		DZA65_RS14025	0.18	-1.9
3,008,161	-		DZA65_RS14025	0.29	-0.5
3,008,234	+		DZA65_RS14025	0.45	-3.5
3,008,251	+		DZA65_RS14025	0.49	-2.7
3,008,256	+		DZA65_RS14025	0.50	+0.1
3,008,256	+		DZA65_RS14025	0.50	-1.2
3,008,257	-		DZA65_RS14025	0.51	+0.1
3,008,264	+		DZA65_RS14025	0.52	-2.6
3,008,264	+		DZA65_RS14025	0.52	-0.5
3,008,264	+		DZA65_RS14025	0.52	-1.5
3,008,290	-		DZA65_RS14025	0.58	+0.1
3,008,290	-		DZA65_RS14025	0.58	-3.1
3,008,331	+		DZA65_RS14025	0.68	+1.1
3,008,331	+		DZA65_RS14025	0.68	-2.5
3,008,331	+		DZA65_RS14025	0.68	-2.3
3,008,332	-		DZA65_RS14025	0.68	-0.6
3,008,332	-				+0.1
3,008,332	-		DZA65_RS14025	0.68	-1.9
3,008,340	-		DZA65_RS14025	0.70	-2.1
3,008,436	+				-0.5
3,008,437	-				-2.2
3,008,467	-				-0.5
3,008,467	-				-1.2
3,008,494	+				+0.1
3,008,495	-				+1.7
3,008,518	+				+0.1
3,008,519	-				-1.5
3,008,530	+				-0.6
3,008,531	-				-0.6
3,008,531	-				+0.8
3,008,531	-				+1.1
3,008,531	-				-1.7
3,008,532	+				+0.1
3,008,532	+				-0.2
3,008,532	+				+1.8
3,008,532	+				+0.7
3,008,532	+				+0.9
3,008,533	-				+1.1
3,008,533	-				-0.1
3,008,533	-				+0.7
3,008,533	-				+0.9
3,008,533	-				-0.1
3,008,533	-				-2.2
3,008,536	+				-1.2
3,008,536	+				+0.7
3,008,536	+				-1.0
3,008,536	+				+0.1
3,008,537	-				+0.5
3,008,537	-				+1.9
3,008,537	-				+0.1
3,008,537	-				-0.5
3,008,539	+				+0.3
3,008,539	+				+0.3
3,008,540	-				+0.5
3,008,545	+				-2.0
3,008,545	+				+1.1
3,008,546	-				+1.9
3,008,546	-				-1.1
3,008,546	-				+1.1
3,008,547	+				+0.0
3,008,547	+				-0.5
3,008,547	+				+0.2
3,008,547	+				-0.3
3,008,547	+				+0.1
3,008,548	-				+0.9
3,008,548	-				-2.1
3,008,550	+				-0.1
3,008,550	+				+0.1
3,008,550	+				+1.1
3,008,550	+				+0.0
3,008,550	+				-0.5
3,008,550	+				-0.3
3,008,551	-				-2.1
3,008,551	-				-1.9
3,008,551	-				-2.7
3,008,551	-				-1.6
3,008,551	-				+0.1
3,008,551	-				+0.5
3,008,551	-				+2.8
3,008,554	+				-2.1
3,008,555	-				-0.9
3,008,555	-				-0.5
3,008,556	+				-0.5
3,008,557	-				+1.4
3,008,622	+				-0.2
3,008,622	+		DZA65_RS14030	0.17	-1.0
3,008,623	-		DZA65_RS14030	0.17	+0.1
3,008,623	-		DZA65_RS14030	0.17	-2.3
3,008,623	-		DZA65_RS14030	0.17	-0.9
3,008,623	-		DZA65_RS14030	0.17	+2.1
3,008,628	-		DZA65_RS14030	0.19	+1.7
3,008,636	-		DZA65_RS14030	0.21	-2.3
3,008,636	-		DZA65_RS14030	0.21	-1.2
3,008,671	-		DZA65_RS14030	0.29	-2.8
3,008,738	+		DZA65_RS14030	0.45	-1.5
3,008,763	+		DZA65_RS14030	0.51	+0.1
3,008,773	-		DZA65_RS14030	0.53	+2.4
3,008,777	+		DZA65_RS14030	0.54	-1.1
3,008,802	-		DZA65_RS14030	0.60	-0.5
3,008,856	+		DZA65_RS14030	0.73	+1.0
3,008,856	+		DZA65_RS14030	0.73	-0.3
3,008,857	-		DZA65_RS14030	0.73	-1.0
3,008,884	+		DZA65_RS14030	0.79	-0.1
3,008,884	+		DZA65_RS14030	0.79	-2.2
3,008,885	-		DZA65_RS14030	0.79	-0.5
3,008,885	-		DZA65_RS14030	0.79	-1.5
3,008,941	+				-2.2
3,008,942	-				+1.4
3,008,942	-				+2.7
3,008,942	-				-2.3
3,009,054	+				-0.6
3,009,096	+				-3.9
3,009,096	+				-3.1
3,009,096	+				-2.1
3,009,097	-				-2.1
3,009,234	+		DZA65_RS14035	0.12	-1.2
3,009,234	+		DZA65_RS14035	0.12	-0.5
3,009,235	-		DZA65_RS14035	0.12	-1.3
3,009,235	-		DZA65_RS14035	0.12	-2.5
3,009,329	+		DZA65_RS14035	0.16	-1.7
3,009,329	+		DZA65_RS14035	0.16	+1.3
3,009,330	-		DZA65_RS14035	0.17	-4.0
3,009,330	-		DZA65_RS14035	0.17	-1.2
3,009,330	-		DZA65_RS14035	0.17	-2.1
3,009,352	+		DZA65_RS14035	0.18	-2.9
3,009,352	+		DZA65_RS14035	0.18	-3.6
3,009,352	+		DZA65_RS14035	0.18	-3.2
3,009,353	-		DZA65_RS14035	0.18	-0.5
3,009,353	-		DZA65_RS14035	0.18	-0.9
3,009,407	+		DZA65_RS14035	0.20	-2.8
3,009,408	-		DZA65_RS14035	0.20	-2.6
3,009,408	-		DZA65_RS14035	0.20	-0.9
3,009,466	-		DZA65_RS14035	0.23	+0.7
3,009,485	+		DZA65_RS14035	0.24	-1.9
3,009,485	+		DZA65_RS14035	0.24	-1.5
3,009,486	-		DZA65_RS14035	0.24	-3.1
3,009,503	+		DZA65_RS14035	0.25	-3.1
3,009,504	-		DZA65_RS14035	0.25	-3.1
3,009,582	+		DZA65_RS14035	0.29	-3.1
3,009,583	-		DZA65_RS14035	0.29	-2.7
3,009,583	-		DZA65_RS14035	0.29	-2.3
3,009,583	-		DZA65_RS14035	0.29	-2.6
3,009,611	+		DZA65_RS14035	0.30	-3.0
3,009,629	+		DZA65_RS14035	0.31	-2.1
3,009,629	+		DZA65_RS14035	0.31	-4.0
3,009,629	+		DZA65_RS14035	0.31	-2.8
3,009,629	+		DZA65_RS14035	0.31	-0.9
3,009,630	-		DZA65_RS14035	0.31	-3.9
3,009,630	-		DZA65_RS14035	0.31	-1.2
3,009,630	-		DZA65_RS14035	0.31	-2.5
3,009,630	-		DZA65_RS14035	0.31	+0.4
3,009,630	-		DZA65_RS14035	0.31	-3.5
3,009,630	-		DZA65_RS14035	0.31	-2.5
3,009,630	-		DZA65_RS14035	0.31	-2.6
3,009,630	-		DZA65_RS14035	0.31	-1.1
3,009,631	+		DZA65_RS14035	0.31	-3.3
3,009,631	+		DZA65_RS14035	0.31	-3.3
3,009,631	+		DZA65_RS14035	0.31	-1.9
3,009,631	+		DZA65_RS14035	0.31	+0.1
3,009,631	+		DZA65_RS14035	0.31	-3.1
3,009,631	+				-1.5
3,009,631	+		DZA65_RS14035	0.31	-5.0
3,009,631	+		DZA65_RS14035	0.31	-0.5
3,009,631	+		DZA65_RS14035	0.31	-1.5
3,009,632	-		DZA65_RS14035	0.31	-1.5
3,009,632	-		DZA65_RS14035	0.31	-1.3
3,009,632	-		DZA65_RS14035	0.31	-2.9
3,009,632	-		DZA65_RS14035	0.31	-0.9
3,009,632	-		DZA65_RS14035	0.31	-2.1
3,009,747	-		DZA65_RS14035	0.36	-1.6
3,009,809	+		DZA65_RS14035	0.39	-1.2
3,009,809	+		DZA65_RS14035	0.39	-1.7
3,009,809	+		DZA65_RS14035	0.39	-3.1
3,009,809	+		DZA65_RS14035	0.39	-3.5
3,009,810	-		DZA65_RS14035	0.40	-2.7
3,009,814	+		DZA65_RS14035	0.40	-2.5
3,009,815	-		DZA65_RS14035	0.40	-2.1
3,009,849	-		DZA65_RS14035	0.41	-2.3
3,009,899	+		DZA65_RS14035	0.44	-2.2
3,009,966	+		DZA65_RS14035	0.47	-0.5
3,009,967	-		DZA65_RS14035	0.47	-1.5
3,009,967	-		DZA65_RS14035	0.47	+0.1
3,009,967	-		DZA65_RS14035	0.47	-3.7
3,009,967	-		DZA65_RS14035	0.47	-1.2
3,009,967	-		DZA65_RS14035	0.47	-3.2
3,009,967	-		DZA65_RS14035	0.47	-2.7
3,009,967	-		DZA65_RS14035	0.47	-1.7
3,009,967	-		DZA65_RS14035	0.47	-3.8