Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11645

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,484,058	+				-0.2
2,484,098	+				-0.5
2,484,121	+				+1.5
2,484,121	+				-0.3
2,484,121	+				+1.5
2,484,193	+				+0.7
2,484,193	+				+0.9
2,484,211	-		DZA65_RS11640	0.12	-1.3
2,484,440	+		DZA65_RS11640	0.48	-0.3
2,484,441	-		DZA65_RS11640	0.48	-1.3
2,484,623	-		DZA65_RS11640	0.78	-0.1
2,484,625	+		DZA65_RS11640	0.78	+0.4
2,484,625	+		DZA65_RS11640	0.78	+1.5
2,484,626	-		DZA65_RS11640	0.78	-0.6
2,484,626	-		DZA65_RS11640	0.78	+0.2
2,484,626	-		DZA65_RS11640	0.78	-0.4
2,484,626	-		DZA65_RS11640	0.78	-0.1
2,484,626	-		DZA65_RS11640	0.78	+1.1
2,484,667	+		DZA65_RS11640	0.85	-0.7
2,484,668	-		DZA65_RS11640	0.85	-1.4
2,484,668	-		DZA65_RS11640	0.85	-0.3
2,484,668	-		DZA65_RS11640	0.85	+1.3
2,484,679	+		DZA65_RS11640	0.87	+1.9
2,484,680	-		DZA65_RS11640	0.87	+0.1
2,484,761	-				-0.9
2,484,790	+				-0.5
2,484,790	+				+0.3
2,484,791	-				-0.1
2,484,791	-				+0.9
2,484,812	+				-0.5
2,484,812	+				-1.3
2,484,813	-				-1.1
2,484,819	-				+1.4
2,484,865	+				-0.3
2,484,876	-				+0.1
2,484,876	-				+1.2
2,484,880	+				-1.5
2,484,881	-				+0.9
2,484,891	-				+1.5
2,484,930	-				-0.7
2,484,930	-				-0.7
2,484,977	+				+0.8
2,484,977	+				+0.3
2,484,977	+				+1.9
2,484,979	+				-0.7
2,484,997	+				-0.9
2,485,017	-				+1.3
2,485,017	-				+0.3
2,485,022	+				+0.4
2,485,022	+				+0.3
2,485,159	+		DZA65_RS11645	0.11	+0.9
2,485,160	-		DZA65_RS11645	0.11	-0.2
2,485,435	+		DZA65_RS11645	0.31	-0.1
2,485,435	+		DZA65_RS11645	0.31	+0.3
2,485,436	-		DZA65_RS11645	0.31	+2.0
2,485,436	-		DZA65_RS11645	0.31	+0.0
2,485,436	-		DZA65_RS11645	0.31	-0.5
2,485,436	-		DZA65_RS11645	0.31	-0.5
2,485,438	+		DZA65_RS11645	0.31	-0.1
2,485,439	-		DZA65_RS11645	0.31	-2.0
2,485,459	-		DZA65_RS11645	0.33	-0.1
2,485,497	+		DZA65_RS11645	0.36	-0.6
2,485,497	+		DZA65_RS11645	0.36	+2.6
2,485,497	+		DZA65_RS11645	0.36	-1.7
2,485,498	-		DZA65_RS11645	0.36	-1.9
2,485,498	-		DZA65_RS11645	0.36	-2.5
2,485,498	-		DZA65_RS11645	0.36	+1.9
2,485,498	-		DZA65_RS11645	0.36	+0.4
2,485,498	-		DZA65_RS11645	0.36	-0.3
2,485,498	-		DZA65_RS11645	0.36	+1.5
2,485,498	-		DZA65_RS11645	0.36	-1.8
2,485,498	-		DZA65_RS11645	0.36	-0.2
2,485,609	-		DZA65_RS11645	0.44	-0.4
2,485,630	+		DZA65_RS11645	0.45	+0.3
2,485,631	-		DZA65_RS11645	0.45	+1.5
2,485,631	-		DZA65_RS11645	0.45	+0.4
2,485,665	+		DZA65_RS11645	0.48	-0.7
2,485,666	-		DZA65_RS11645	0.48	-0.3
2,485,745	+		DZA65_RS11645	0.54	+0.9
2,485,903	+		DZA65_RS11645	0.65	+0.0
2,485,903	+		DZA65_RS11645	0.65	+0.1
2,485,906	+		DZA65_RS11645	0.66	+0.1
2,485,906	+		DZA65_RS11645	0.66	-0.2
2,485,906	+		DZA65_RS11645	0.66	-0.4
2,485,907	-		DZA65_RS11645	0.66	-0.1
2,485,942	+		DZA65_RS11645	0.68	-1.8
2,485,942	+		DZA65_RS11645	0.68	-2.0
2,485,942	+		DZA65_RS11645	0.68	+0.6
2,485,942	+		DZA65_RS11645	0.68	-2.9
2,485,943	-		DZA65_RS11645	0.68	-1.9
2,485,943	-		DZA65_RS11645	0.68	-1.9
2,485,943	-		DZA65_RS11645	0.68	-1.9
2,485,951	+		DZA65_RS11645	0.69	+1.5
2,485,951	+		DZA65_RS11645	0.69	+0.1
2,485,951	+		DZA65_RS11645	0.69	-1.4
2,485,984	+		DZA65_RS11645	0.71	-1.2
2,485,984	+		DZA65_RS11645	0.71	+0.2
2,485,984	+		DZA65_RS11645	0.71	+0.0
2,485,984	+		DZA65_RS11645	0.71	+1.6
2,485,984	+		DZA65_RS11645	0.71	-1.1
2,485,984	+		DZA65_RS11645	0.71	+0.9
2,485,984	+		DZA65_RS11645	0.71	+0.9
2,485,984	+		DZA65_RS11645	0.71	-1.4
2,485,985	-		DZA65_RS11645	0.71	+0.0
2,485,985	-		DZA65_RS11645	0.71	-1.0
2,485,985	-		DZA65_RS11645	0.71	-1.1
2,485,985	-		DZA65_RS11645	0.71	-0.1
2,485,985	-		DZA65_RS11645	0.71	-0.1
2,485,985	-		DZA65_RS11645	0.71	+0.9
2,485,986	+		DZA65_RS11645	0.72	+0.9
2,485,986	+		DZA65_RS11645	0.72	-1.7
2,485,986	+		DZA65_RS11645	0.72	-2.3
2,485,986	+		DZA65_RS11645	0.72	-1.7
2,485,986	+		DZA65_RS11645	0.72	-1.6
2,485,986	+		DZA65_RS11645	0.72	-0.9
2,485,987	-		DZA65_RS11645	0.72	-2.7
2,485,987	-		DZA65_RS11645	0.72	+1.9
2,485,987	-		DZA65_RS11645	0.72	-2.1
2,485,987	-		DZA65_RS11645	0.72	+1.2
2,485,987	-		DZA65_RS11645	0.72	-0.6
2,486,001	+		DZA65_RS11645	0.73	-0.9
2,486,001	+		DZA65_RS11645	0.73	+0.2
2,486,001	+		DZA65_RS11645	0.73	-0.3
2,486,002	-		DZA65_RS11645	0.73	-1.8
2,486,120	+		DZA65_RS11645	0.81	-0.4
2,486,120	+		DZA65_RS11645	0.81	+0.5
2,486,120	+		DZA65_RS11645	0.81	-1.1
2,486,120	+		DZA65_RS11645	0.81	-1.9
2,486,121	-		DZA65_RS11645	0.81	-1.4
2,486,124	+		DZA65_RS11645	0.82	+0.3
2,486,124	+		DZA65_RS11645	0.82	+0.6
2,486,124	+		DZA65_RS11645	0.82	+1.6
2,486,125	-				-1.1
2,486,125	-		DZA65_RS11645	0.82	-0.9
2,486,125	-		DZA65_RS11645	0.82	-1.9
2,486,171	+		DZA65_RS11645	0.85	+0.3
2,486,172	-		DZA65_RS11645	0.85	-0.3
2,486,172	-		DZA65_RS11645	0.85	+0.1
2,486,172	-		DZA65_RS11645	0.85	-2.1
2,486,172	-		DZA65_RS11645	0.85	-1.4
2,486,172	-		DZA65_RS11645	0.85	+0.9
2,486,172	-		DZA65_RS11645	0.85	-1.6
2,486,294	-				-1.7
2,486,323	+				-2.1
2,486,674	+		DZA65_RS11650	0.15	+0.8
2,486,689	+		DZA65_RS11650	0.15	-1.7
2,486,773	+		DZA65_RS11650	0.21	-1.5
2,486,782	+		DZA65_RS11650	0.21	-0.9
2,486,782	+		DZA65_RS11650	0.21	+0.4
2,486,782	+		DZA65_RS11650	0.21	-2.1
2,486,783	-		DZA65_RS11650	0.21	-2.4
2,486,783	-		DZA65_RS11650	0.21	+0.6
2,486,824	+		DZA65_RS11650	0.24	+0.3
2,486,941	+		DZA65_RS11650	0.31	+0.3
2,486,941	+		DZA65_RS11650	0.31	-0.9
2,486,941	+		DZA65_RS11650	0.31	-2.0
2,486,942	-		DZA65_RS11650	0.31	-0.3
2,486,942	-		DZA65_RS11650	0.31	-0.9
2,486,968	+		DZA65_RS11650	0.33	-0.7
2,486,968	+		DZA65_RS11650	0.33	-0.5
2,486,968	+		DZA65_RS11650	0.33	-0.1
2,486,968	+		DZA65_RS11650	0.33	+0.2
2,486,968	+		DZA65_RS11650	0.33	-1.1
2,486,969	-		DZA65_RS11650	0.33	+0.3
2,486,969	-		DZA65_RS11650	0.33	+0.9
2,486,975	-		DZA65_RS11650	0.34	-1.4
2,486,977	+		DZA65_RS11650	0.34	-1.7
2,486,977	+		DZA65_RS11650	0.34	-1.1
2,486,978	-		DZA65_RS11650	0.34	+2.2
2,486,978	-		DZA65_RS11650	0.34	-0.7
2,487,010	+				-2.3
2,487,010	+		DZA65_RS11650	0.36	-1.0
2,487,011	-		DZA65_RS11650	0.36	-0.2
2,487,082	+		DZA65_RS11650	0.40	+0.3
2,487,085	+		DZA65_RS11650	0.41	+1.5
2,487,085	+		DZA65_RS11650	0.41	+0.5
2,487,085	+		DZA65_RS11650	0.41	-0.3
2,487,085	+				-2.3
2,487,085	+		DZA65_RS11650	0.41	-0.4
2,487,094	+		DZA65_RS11650	0.41	-0.6
2,487,101	+		DZA65_RS11650	0.42	+0.5
2,487,154	+		DZA65_RS11650	0.45	-0.9
2,487,176	-		DZA65_RS11650	0.46	+0.6
2,487,227	+		DZA65_RS11650	0.50	+0.6
2,487,280	+		DZA65_RS11650	0.53	-0.3
2,487,281	-		DZA65_RS11650	0.53	-0.3
2,487,281	-		DZA65_RS11650	0.53	-1.0
2,487,281	-		DZA65_RS11650	0.53	-2.3
2,487,299	-		DZA65_RS11650	0.54	-3.2
2,487,367	+		DZA65_RS11650	0.58	-0.0