Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11415

Experiment: Stem-Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS11405 and DZA65_RS11410 are separated by 209 nucleotidesDZA65_RS11410 and DZA65_RS11415 are separated by 3 nucleotidesDZA65_RS11415 and DZA65_RS11420 are separated by 129 nucleotides DZA65_RS11405: DZA65_RS11405 - glutamyl-tRNA reductase, at 2,426,569 to 2,427,825 _RS11405 DZA65_RS11410: DZA65_RS11410 - lipoprotein localization protein LolB, at 2,428,035 to 2,428,655 _RS11410 DZA65_RS11415: DZA65_RS11415 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 2,428,659 to 2,429,531 _RS11415 DZA65_RS11420: DZA65_RS11420 - ribose-phosphate diphosphokinase, at 2,429,661 to 2,430,608 _RS11420 Position (kb) 2428 2429 2430Strain fitness (log2 ratio) -2 -1 0 1at 2427.850 kb on - strandat 2427.850 kb on - strandat 2427.853 kb on - strandat 2427.853 kb on - strandat 2427.878 kb on - strandat 2427.878 kb on - strandat 2428.017 kb on + strandat 2429.529 kb on + strandat 2429.529 kb on + strandat 2429.529 kb on + strandat 2429.557 kb on + strandat 2429.580 kb on + strandat 2429.580 kb on + strandat 2429.584 kb on + strandat 2429.584 kb on + strandat 2429.584 kb on + strandat 2429.584 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Norland
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2,427,850 - -1.4
2,427,850 - +0.9
2,427,853 - -1.9
2,427,853 - +0.2
2,427,878 - +0.0
2,427,878 - -1.4
2,428,017 + -1.1
2,429,529 + -1.3
2,429,529 + -1.4
2,429,529 + -1.8
2,429,557 + -0.8
2,429,580 + -0.8
2,429,580 + -1.6
2,429,584 + -0.1
2,429,584 + -2.6
2,429,584 + -1.9
2,429,584 + -0.7

Or see this region's nucleotide sequence