Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11225

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,377,938	+		DZA65_RS11220	0.65	-1.2
2,377,938	+		DZA65_RS11220	0.65	+1.9
2,377,938	+		DZA65_RS11220	0.65	+0.4
2,377,938	+		DZA65_RS11220	0.65	+0.2
2,377,938	+		DZA65_RS11220	0.65	+0.7
2,377,938	+		DZA65_RS11220	0.65	-1.2
2,377,939	-		DZA65_RS11220	0.65	+0.9
2,377,939	-		DZA65_RS11220	0.65	-1.8
2,377,939	-		DZA65_RS11220	0.65	-0.8
2,377,939	-		DZA65_RS11220	0.65	+0.6
2,377,939	-		DZA65_RS11220	0.65	+0.6
2,377,939	-		DZA65_RS11220	0.65	-0.3
2,377,955	-		DZA65_RS11220	0.67	-0.3
2,377,983	+		DZA65_RS11220	0.68	+0.8
2,377,984	-				-0.1
2,377,989	+		DZA65_RS11220	0.69	+1.5
2,377,990	-		DZA65_RS11220	0.69	+1.2
2,377,990	-		DZA65_RS11220	0.69	+0.2
2,377,990	-		DZA65_RS11220	0.69	+1.2
2,378,000	-		DZA65_RS11220	0.70	+1.9
2,378,005	-		DZA65_RS11220	0.70	-1.3
2,378,033	-		DZA65_RS11220	0.72	+0.9
2,378,034	+		DZA65_RS11220	0.72	+0.7
2,378,034	+		DZA65_RS11220	0.72	-0.1
2,378,034	+		DZA65_RS11220	0.72	-0.7
2,378,035	-		DZA65_RS11220	0.72	-0.4
2,378,035	-		DZA65_RS11220	0.72	-1.9
2,378,035	-		DZA65_RS11220	0.72	-0.8
2,378,234	+		DZA65_RS11220	0.86	+0.7
2,378,234	+		DZA65_RS11220	0.86	-0.3
2,378,234	+		DZA65_RS11220	0.86	-1.3
2,378,235	-		DZA65_RS11220	0.86	+0.3
2,378,451	+				+0.9
2,378,455	+				+0.9
2,378,456	-				-1.9
2,378,577	+				-1.0
2,379,074	+		DZA65_RS11225	0.14	-0.1
2,379,075	-		DZA65_RS11225	0.14	+1.7
2,379,075	-		DZA65_RS11225	0.14	-1.4
2,379,109	+		DZA65_RS11225	0.17	-0.6
2,379,110	-		DZA65_RS11225	0.17	+0.6
2,379,110	-		DZA65_RS11225	0.17	-2.1
2,379,152	+		DZA65_RS11225	0.20	-1.9
2,379,152	+				+0.6
2,379,152	+		DZA65_RS11225	0.20	-0.3
2,379,152	+		DZA65_RS11225	0.20	+2.5
2,379,152	+		DZA65_RS11225	0.20	+0.6
2,379,152	+		DZA65_RS11225	0.20	+0.9
2,379,153	-		DZA65_RS11225	0.20	-2.6
2,379,153	-		DZA65_RS11225	0.20	-1.4
2,379,153	-		DZA65_RS11225	0.20	+1.3
2,379,153	-		DZA65_RS11225	0.20	+0.5
2,379,153	-		DZA65_RS11225	0.20	+0.9
2,379,153	-		DZA65_RS11225	0.20	-0.3
2,379,231	+		DZA65_RS11225	0.25	-0.4
2,379,231	+		DZA65_RS11225	0.25	+1.1
2,379,232	-		DZA65_RS11225	0.25	-3.0
2,379,232	-		DZA65_RS11225	0.25	-2.3
2,379,232	-		DZA65_RS11225	0.25	-1.1
2,379,232	-		DZA65_RS11225	0.25	-1.4
2,379,320	+		DZA65_RS11225	0.31	+0.9
2,379,321	-		DZA65_RS11225	0.31	-0.7
2,379,466	+		DZA65_RS11225	0.41	+1.3
2,379,499	+		DZA65_RS11225	0.44	+1.3
2,379,538	+		DZA65_RS11225	0.46	-1.1
2,379,538	+		DZA65_RS11225	0.46	+1.7
2,379,586	+		DZA65_RS11225	0.50	+0.3
2,379,586	+		DZA65_RS11225	0.50	+0.6
2,379,598	+		DZA65_RS11225	0.50	-0.2
2,379,628	+		DZA65_RS11225	0.53	-0.1
2,379,635	+		DZA65_RS11225	0.53	+0.0
2,379,635	+		DZA65_RS11225	0.53	+0.3
2,379,649	+		DZA65_RS11225	0.54	-0.1
2,379,650	-		DZA65_RS11225	0.54	-2.9
2,379,650	-		DZA65_RS11225	0.54	+0.4
2,379,650	-		DZA65_RS11225	0.54	+0.6
2,379,653	+		DZA65_RS11225	0.54	-1.4
2,379,653	+		DZA65_RS11225	0.54	-1.3
2,379,653	+		DZA65_RS11225	0.54	+0.4
2,379,653	+		DZA65_RS11225	0.54	+0.9
2,379,653	+		DZA65_RS11225	0.54	+2.3
2,379,654	-		DZA65_RS11225	0.54	+0.9
2,379,654	-		DZA65_RS11225	0.54	+0.9
2,379,654	-		DZA65_RS11225	0.54	-0.4
2,379,654	-		DZA65_RS11225	0.54	+0.2
2,379,654	-				-0.1
2,379,654	-		DZA65_RS11225	0.54	-1.4
2,379,654	-		DZA65_RS11225	0.54	+0.9
2,379,664	+		DZA65_RS11225	0.55	-0.4
2,379,664	+		DZA65_RS11225	0.55	+0.1
2,379,665	-		DZA65_RS11225	0.55	+1.9
2,379,665	-		DZA65_RS11225	0.55	-1.7
2,379,665	-		DZA65_RS11225	0.55	+0.9
2,379,677	+		DZA65_RS11225	0.56	-1.4
2,379,677	+		DZA65_RS11225	0.56	-1.1
2,379,678	-		DZA65_RS11225	0.56	-0.7
2,379,679	+		DZA65_RS11225	0.56	+0.9
2,379,679	+		DZA65_RS11225	0.56	-0.3
2,379,679	+		DZA65_RS11225	0.56	+0.9
2,379,706	+		DZA65_RS11225	0.58	-0.7
2,379,706	+		DZA65_RS11225	0.58	+1.6
2,379,706	+		DZA65_RS11225	0.58	+0.1
2,379,706	+		DZA65_RS11225	0.58	-0.4
2,379,706	+		DZA65_RS11225	0.58	-0.7
2,379,706	+		DZA65_RS11225	0.58	+0.2
2,379,706	+		DZA65_RS11225	0.58	+0.6
2,379,707	-		DZA65_RS11225	0.58	+0.6
2,379,707	-		DZA65_RS11225	0.58	-0.4
2,379,707	-		DZA65_RS11225	0.58	-2.3
2,379,752	+				-0.1
2,379,752	+				-1.4
2,379,753	-		DZA65_RS11225	0.61	-0.4
2,379,753	-		DZA65_RS11225	0.61	-1.4
2,379,769	+		DZA65_RS11225	0.62	+1.2
2,379,770	-		DZA65_RS11225	0.62	+1.4
2,379,797	+		DZA65_RS11225	0.64	-2.1
2,379,808	+		DZA65_RS11225	0.65	-0.6
2,379,808	+		DZA65_RS11225	0.65	+2.3
2,379,808	+		DZA65_RS11225	0.65	+0.3
2,379,808	+		DZA65_RS11225	0.65	-0.1
2,379,808	+		DZA65_RS11225	0.65	-2.6
2,379,808	+		DZA65_RS11225	0.65	+0.1
2,379,809	-		DZA65_RS11225	0.65	-0.1
2,379,809	-		DZA65_RS11225	0.65	-0.4
2,379,809	-		DZA65_RS11225	0.65	-1.4
2,379,809	-		DZA65_RS11225	0.65	+0.7
2,379,809	-		DZA65_RS11225	0.65	-0.2
2,379,809	-		DZA65_RS11225	0.65	-1.9
2,379,809	-		DZA65_RS11225	0.65	-0.7
2,379,814	+		DZA65_RS11225	0.65	-0.5
2,379,853	+		DZA65_RS11225	0.68	+1.2
2,379,854	-		DZA65_RS11225	0.68	-0.1
2,379,854	-		DZA65_RS11225	0.68	+0.7
2,379,859	+		DZA65_RS11225	0.69	-0.4
2,379,859	+		DZA65_RS11225	0.69	+0.4
2,379,860	-		DZA65_RS11225	0.69	+0.5
2,379,860	-		DZA65_RS11225	0.69	+0.9
2,379,860	-		DZA65_RS11225	0.69	+1.4
2,379,902	+		DZA65_RS11225	0.72	+0.2
2,379,905	-		DZA65_RS11225	0.72	+0.3
2,379,908	+		DZA65_RS11225	0.72	-1.4
2,379,909	-		DZA65_RS11225	0.72	-0.4
2,379,932	+		DZA65_RS11225	0.74	-0.3
2,379,932	+		DZA65_RS11225	0.74	-1.3
2,379,933	-		DZA65_RS11225	0.74	+1.1
2,379,933	-		DZA65_RS11225	0.74	-2.0
2,379,950	+		DZA65_RS11225	0.75	-1.1
2,379,967	-		DZA65_RS11225	0.76	+0.2
2,380,069	-		DZA65_RS11225	0.83	-0.4
2,380,076	+		DZA65_RS11225	0.84	-3.1
2,380,105	-		DZA65_RS11225	0.86	+0.2
2,380,392	+				-2.3
2,380,393	-				-2.6
2,380,412	+				-0.3
2,380,428	+				-0.1
2,380,458	+				-2.2
2,380,469	+				+1.8
2,380,469	+				-0.6
2,380,469	+				+0.1
2,380,470	-				+0.9
2,380,470	-				+0.1
2,380,500	-				-0.7
2,380,699	+		DZA65_RS11230	0.16	-1.9
2,380,700	-		DZA65_RS11230	0.17	+0.7
2,380,700	-		DZA65_RS11230	0.17	-1.9
2,380,790	-		DZA65_RS11230	0.23	-1.7
2,380,790	-		DZA65_RS11230	0.23	-1.8
2,380,851	-		DZA65_RS11230	0.27	-0.4
2,381,128	+		DZA65_RS11230	0.46	+0.1
2,381,150	+		DZA65_RS11230	0.48	+1.1
2,381,218	+		DZA65_RS11230	0.52	+0.6
2,381,219	-				-0.3
2,381,226	-		DZA65_RS11230	0.53	-1.1
2,381,226	-		DZA65_RS11230	0.53	-0.7
2,381,226	-		DZA65_RS11230	0.53	-0.7
2,381,226	-		DZA65_RS11230	0.53	-1.9
2,381,226	-		DZA65_RS11230	0.53	+0.7
2,381,226	-		DZA65_RS11230	0.53	-0.1
2,381,226	-		DZA65_RS11230	0.53	-1.1
2,381,280	-		DZA65_RS11230	0.57	-0.5
2,381,299	+		DZA65_RS11230	0.58	-1.4
2,381,300	-		DZA65_RS11230	0.58	+0.8