Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04710 and DZA65_RS04715 are separated by 283 nucleotides DZA65_RS04715 and DZA65_RS04720 are separated by 2 nucleotides DZA65_RS04720 and DZA65_RS04725 are separated by 58 nucleotides DZA65_RS04725 and DZA65_RS04730 are separated by 107 nucleotides
DZA65_RS04710: DZA65_RS04710 - IS110 family transposase, at 980,108 to 981,111
_RS04710
DZA65_RS04715: DZA65_RS04715 - type II toxin-antitoxin system toxin CcdB, at 981,395 to 981,700
_RS04715
DZA65_RS04720: DZA65_RS04720 - type II toxin-antitoxin system antitoxin CcdA, at 981,703 to 981,921
_RS04720
DZA65_RS04725: DZA65_RS04725 - DUF4102 domain-containing protein, at 981,980 to 982,426
_RS04725
DZA65_RS04730: DZA65_RS04730 - hypothetical protein, at 982,534 to 982,716
_RS04730
Position (kb) 981
982 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 981.022 kb on + strand at 981.026 kb on + strand at 981.026 kb on + strand at 981.026 kb on + strand at 981.026 kb on + strand at 981.072 kb on - strand at 981.072 kb on - strand at 981.072 kb on - strand at 981.072 kb on - strand at 981.072 kb on - strand at 981.072 kb on - strand at 981.072 kb on - strand at 981.072 kb on - strand at 981.200 kb on + strand at 981.204 kb on + strand at 981.204 kb on + strand at 981.217 kb on + strand at 981.218 kb on - strand at 981.226 kb on + strand at 981.231 kb on + strand at 981.231 kb on + strand at 981.231 kb on + strand at 981.232 kb on - strand at 981.234 kb on + strand at 981.234 kb on + strand at 981.234 kb on + strand at 981.234 kb on + strand at 981.235 kb on - strand at 981.287 kb on + strand at 981.287 kb on + strand at 981.287 kb on + strand at 981.287 kb on + strand at 981.287 kb on + strand at 981.287 kb on + strand at 981.287 kb on + strand at 981.287 kb on + strand at 981.287 kb on + strand at 981.287 kb on + strand at 981.288 kb on - strand at 981.288 kb on - strand at 981.288 kb on - strand at 981.288 kb on - strand at 981.288 kb on - strand at 981.288 kb on - strand at 981.288 kb on - strand at 981.288 kb on - strand at 981.288 kb on - strand at 981.291 kb on + strand at 981.320 kb on - strand at 981.344 kb on + strand at 981.344 kb on + strand at 981.345 kb on - strand at 981.345 kb on - strand at 981.348 kb on + strand at 981.348 kb on + strand at 981.348 kb on + strand at 981.349 kb on - strand at 981.349 kb on - strand at 981.349 kb on - strand at 981.412 kb on + strand at 981.412 kb on + strand at 981.413 kb on - strand at 981.413 kb on - strand at 981.418 kb on + strand at 981.418 kb on + strand at 981.418 kb on + strand at 981.418 kb on + strand at 981.418 kb on + strand at 981.418 kb on + strand at 981.418 kb on + strand at 981.418 kb on + strand at 981.418 kb on + strand at 981.419 kb on - strand at 981.419 kb on - strand at 981.419 kb on - strand at 981.419 kb on - strand at 981.419 kb on - strand at 981.419 kb on - strand at 981.421 kb on + strand at 981.421 kb on + strand at 981.421 kb on + strand at 981.421 kb on + strand at 981.422 kb on - strand at 981.422 kb on - strand at 981.422 kb on - strand at 981.422 kb on - strand at 981.475 kb on + strand, within DZA65_RS04715 at 981.476 kb on - strand, within DZA65_RS04715 at 981.498 kb on - strand, within DZA65_RS04715 at 981.498 kb on - strand, within DZA65_RS04715 at 981.559 kb on + strand, within DZA65_RS04715 at 981.559 kb on + strand, within DZA65_RS04715 at 981.559 kb on + strand, within DZA65_RS04715 at 981.559 kb on + strand, within DZA65_RS04715 at 981.560 kb on - strand, within DZA65_RS04715 at 981.591 kb on - strand, within DZA65_RS04715 at 981.607 kb on + strand, within DZA65_RS04715 at 981.607 kb on + strand, within DZA65_RS04715 at 981.608 kb on - strand, within DZA65_RS04715 at 981.608 kb on - strand, within DZA65_RS04715 at 981.852 kb on + strand, within DZA65_RS04720 at 981.852 kb on + strand, within DZA65_RS04720 at 981.881 kb on + strand, within DZA65_RS04720 at 981.881 kb on + strand, within DZA65_RS04720 at 981.945 kb on - strand at 981.981 kb on + strand at 982.021 kb on + strand at 982.021 kb on + strand at 982.022 kb on - strand at 982.022 kb on - strand at 982.023 kb on + strand at 982.115 kb on - strand, within DZA65_RS04725 at 982.146 kb on + strand, within DZA65_RS04725 at 982.155 kb on + strand, within DZA65_RS04725 at 982.156 kb on - strand, within DZA65_RS04725 at 982.156 kb on - strand, within DZA65_RS04725 at 982.164 kb on + strand, within DZA65_RS04725 at 982.164 kb on + strand, within DZA65_RS04725 at 982.164 kb on + strand, within DZA65_RS04725 at 982.164 kb on + strand, within DZA65_RS04725 at 982.165 kb on - strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.175 kb on - strand, within DZA65_RS04725 at 982.274 kb on + strand at 982.274 kb on + strand, within DZA65_RS04725 at 982.274 kb on + strand, within DZA65_RS04725 at 982.275 kb on - strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.315 kb on - strand, within DZA65_RS04725 at 982.315 kb on - strand, within DZA65_RS04725 at 982.315 kb on - strand, within DZA65_RS04725 at 982.315 kb on - strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.320 kb on - strand, within DZA65_RS04725 at 982.351 kb on - strand, within DZA65_RS04725 at 982.351 kb on - strand, within DZA65_RS04725 at 982.351 kb on - strand at 982.351 kb on - strand, within DZA65_RS04725 at 982.351 kb on - strand, within DZA65_RS04725 at 982.378 kb on - strand, within DZA65_RS04725 at 982.474 kb on + strand at 982.503 kb on - strand at 982.503 kb on - strand at 982.531 kb on + strand at 982.532 kb on - strand at 982.532 kb on - strand at 982.535 kb on + strand at 982.535 kb on + strand at 982.536 kb on - strand at 982.579 kb on + strand, within DZA65_RS04730 at 982.579 kb on + strand, within DZA65_RS04730 at 982.623 kb on - strand, within DZA65_RS04730 at 982.697 kb on - strand, within DZA65_RS04730
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 981,022 + -0.2 981,026 + -0.3 981,026 + -0.1 981,026 + -1.0 981,026 + +0.3 981,072 - +0.5 981,072 - -0.7 981,072 - -1.0 981,072 - +2.3 981,072 - -0.7 981,072 - -1.2 981,072 - -0.8 981,072 - -1.2 981,200 + -1.5 981,204 + -0.7 981,204 + -0.7 981,217 + +0.0 981,218 - +1.8 981,226 + -1.0 981,231 + -0.3 981,231 + -1.0 981,231 + -0.2 981,232 - -1.9 981,234 + -1.5 981,234 + +0.3 981,234 + -0.0 981,234 + -1.5 981,235 - -1.8 981,287 + -0.2 981,287 + -0.4 981,287 + -0.8 981,287 + +0.1 981,287 + -2.4 981,287 + -2.0 981,287 + -0.7 981,287 + +0.0 981,287 + -1.0 981,287 + +0.8 981,288 - +0.7 981,288 - +0.1 981,288 - -0.8 981,288 - +0.8 981,288 - +1.3 981,288 - -1.0 981,288 - +1.6 981,288 - -1.0 981,288 - -0.4 981,291 + +0.8 981,320 - +0.5 981,344 + +0.0 981,344 + +0.3 981,345 - -2.0 981,345 - -0.7 981,348 + -0.7 981,348 + -0.7 981,348 + -1.3 981,349 - -1.0 981,349 - +2.3 981,349 - +1.3 981,412 + +1.1 981,412 + +1.7 981,413 - +0.1 981,413 - +1.7 981,418 + -2.1 981,418 + -1.8 981,418 + -1.8 981,418 + -0.5 981,418 + +1.3 981,418 + +0.3 981,418 + -0.5 981,418 + -1.3 981,418 + -0.7 981,419 - +0.3 981,419 - -0.7 981,419 - -2.6 981,419 - +0.3 981,419 - +0.3 981,419 - -1.2 981,421 + +0.3 981,421 + -2.9 981,421 + -0.6 981,421 + +0.8 981,422 - -1.7 981,422 - +0.2 981,422 - -1.0 981,422 - -0.1 981,475 + DZA65_RS04715 0.26 -0.2 981,476 - DZA65_RS04715 0.26 -2.4 981,498 - DZA65_RS04715 0.34 -1.0 981,498 - DZA65_RS04715 0.34 -0.8 981,559 + DZA65_RS04715 0.54 +0.8 981,559 + DZA65_RS04715 0.54 +1.3 981,559 + DZA65_RS04715 0.54 -0.2 981,559 + DZA65_RS04715 0.54 -1.9 981,560 - DZA65_RS04715 0.54 -0.6 981,591 - DZA65_RS04715 0.64 -0.8 981,607 + DZA65_RS04715 0.69 +0.8 981,607 + DZA65_RS04715 0.69 -1.5 981,608 - DZA65_RS04715 0.70 +1.3 981,608 - DZA65_RS04715 0.70 -0.4 981,852 + DZA65_RS04720 0.68 +0.3 981,852 + DZA65_RS04720 0.68 -1.7 981,881 + DZA65_RS04720 0.81 -0.8 981,881 + DZA65_RS04720 0.81 +1.3 981,945 - +0.5 981,981 + -0.6 982,021 + +0.9 982,021 + -1.2 982,022 - +0.1 982,022 - -0.6 982,023 + -2.9 982,115 - DZA65_RS04725 0.30 +0.3 982,146 + DZA65_RS04725 0.37 -1.9 982,155 + DZA65_RS04725 0.39 +0.0 982,156 - DZA65_RS04725 0.39 -2.1 982,156 - DZA65_RS04725 0.39 -2.4 982,164 + DZA65_RS04725 0.41 +0.2 982,164 + DZA65_RS04725 0.41 -0.7 982,164 + DZA65_RS04725 0.41 +0.3 982,164 + DZA65_RS04725 0.41 -0.4 982,165 - DZA65_RS04725 0.41 +0.0 982,168 + DZA65_RS04725 0.42 +0.3 982,168 + DZA65_RS04725 0.42 -1.2 982,168 + DZA65_RS04725 0.42 +1.1 982,168 + DZA65_RS04725 0.42 +0.5 982,168 + DZA65_RS04725 0.42 -0.7 982,168 + DZA65_RS04725 0.42 -2.9 982,168 + DZA65_RS04725 0.42 -1.4 982,168 + DZA65_RS04725 0.42 -1.0 982,168 + DZA65_RS04725 0.42 +0.1 982,169 - DZA65_RS04725 0.42 -1.4 982,169 - DZA65_RS04725 0.42 +1.3 982,169 - DZA65_RS04725 0.42 +1.6 982,169 - DZA65_RS04725 0.42 +0.3 982,169 - DZA65_RS04725 0.42 +1.0 982,169 - DZA65_RS04725 0.42 -0.2 982,169 - DZA65_RS04725 0.42 -1.7 982,175 - DZA65_RS04725 0.44 -0.2 982,274 + +1.3 982,274 + DZA65_RS04725 0.66 -2.1 982,274 + DZA65_RS04725 0.66 -0.7 982,275 - DZA65_RS04725 0.66 +0.0 982,314 + DZA65_RS04725 0.75 +0.3 982,314 + DZA65_RS04725 0.75 +1.8 982,314 + DZA65_RS04725 0.75 -0.7 982,314 + DZA65_RS04725 0.75 -1.1 982,314 + DZA65_RS04725 0.75 +0.1 982,315 - DZA65_RS04725 0.75 -0.2 982,315 - DZA65_RS04725 0.75 -1.5 982,315 - DZA65_RS04725 0.75 -0.9 982,315 - DZA65_RS04725 0.75 -0.2 982,319 + DZA65_RS04725 0.76 -1.4 982,319 + DZA65_RS04725 0.76 -0.7 982,319 + DZA65_RS04725 0.76 -1.7 982,319 + DZA65_RS04725 0.76 -1.2 982,319 + DZA65_RS04725 0.76 -1.2 982,319 + DZA65_RS04725 0.76 +0.3 982,320 - DZA65_RS04725 0.76 -0.2 982,351 - DZA65_RS04725 0.83 -0.7 982,351 - DZA65_RS04725 0.83 +0.0 982,351 - -1.5 982,351 - DZA65_RS04725 0.83 +0.8 982,351 - DZA65_RS04725 0.83 -1.1 982,378 - DZA65_RS04725 0.89 +0.3 982,474 + -2.8 982,503 - +0.9 982,503 - -2.2 982,531 + -1.1 982,532 - -1.5 982,532 - -1.2 982,535 + -0.2 982,535 + -0.9 982,536 - +0.2 982,579 + DZA65_RS04730 0.25 -1.0 982,579 + DZA65_RS04730 0.25 -0.8 982,623 - DZA65_RS04730 0.49 -1.7 982,697 - DZA65_RS04730 0.89 -1.5
Or see this region's nucleotide sequence