Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04385 and DZA65_RS04390 are separated by 46 nucleotides DZA65_RS04390 and DZA65_RS04395 are separated by 448 nucleotides DZA65_RS04395 and DZA65_RS04400 are separated by 76 nucleotides
DZA65_RS04385: DZA65_RS04385 - L-methionine/branched-chain amino acid transporter, at 914,454 to 915,707
_RS04385
DZA65_RS04390: DZA65_RS04390 - accessory factor UbiK family protein, at 915,754 to 916,038
_RS04390
DZA65_RS04395: DZA65_RS04395 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 916,487 to 917,140
_RS04395
DZA65_RS04400: DZA65_RS04400 - SAM-dependent methyltransferase TehB, at 917,217 to 918,080
_RS04400
Position (kb) 916
917
918 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 915.519 kb on + strand, within DZA65_RS04385 at 915.519 kb on + strand, within DZA65_RS04385 at 915.519 kb on + strand, within DZA65_RS04385 at 915.520 kb on - strand, within DZA65_RS04385 at 915.520 kb on - strand, within DZA65_RS04385 at 915.523 kb on + strand, within DZA65_RS04385 at 915.523 kb on + strand, within DZA65_RS04385 at 915.523 kb on + strand, within DZA65_RS04385 at 915.523 kb on + strand, within DZA65_RS04385 at 915.524 kb on - strand, within DZA65_RS04385 at 915.524 kb on - strand, within DZA65_RS04385 at 915.524 kb on - strand, within DZA65_RS04385 at 915.524 kb on - strand, within DZA65_RS04385 at 915.524 kb on - strand, within DZA65_RS04385 at 915.524 kb on - strand, within DZA65_RS04385 at 915.701 kb on + strand at 915.755 kb on + strand at 915.755 kb on + strand at 915.756 kb on - strand at 915.822 kb on + strand, within DZA65_RS04390 at 915.822 kb on + strand, within DZA65_RS04390 at 915.822 kb on + strand, within DZA65_RS04390 at 915.822 kb on + strand, within DZA65_RS04390 at 915.822 kb on + strand, within DZA65_RS04390 at 915.823 kb on - strand, within DZA65_RS04390 at 915.823 kb on - strand, within DZA65_RS04390 at 915.823 kb on - strand, within DZA65_RS04390 at 915.823 kb on - strand, within DZA65_RS04390 at 915.823 kb on - strand, within DZA65_RS04390 at 915.953 kb on - strand, within DZA65_RS04390 at 916.073 kb on + strand at 916.073 kb on + strand at 916.074 kb on - strand at 916.074 kb on - strand at 916.074 kb on - strand at 916.074 kb on - strand at 916.075 kb on + strand at 916.075 kb on + strand at 916.075 kb on + strand at 916.076 kb on - strand at 916.076 kb on - strand at 916.076 kb on - strand at 916.076 kb on - strand at 916.086 kb on + strand at 916.086 kb on + strand at 916.086 kb on + strand at 916.105 kb on + strand at 916.148 kb on + strand at 916.148 kb on + strand at 916.149 kb on - strand at 916.149 kb on - strand at 916.149 kb on - strand at 916.149 kb on - strand at 916.149 kb on - strand at 916.149 kb on - strand at 916.159 kb on + strand at 916.188 kb on + strand at 916.188 kb on + strand at 916.190 kb on + strand at 916.190 kb on + strand at 916.193 kb on + strand at 916.193 kb on + strand at 916.193 kb on + strand at 916.193 kb on + strand at 916.193 kb on + strand at 916.203 kb on + strand at 916.315 kb on + strand at 916.336 kb on + strand at 916.466 kb on + strand at 917.128 kb on + strand at 917.142 kb on + strand at 917.142 kb on + strand at 917.143 kb on - strand at 917.143 kb on - strand at 917.172 kb on + strand at 917.172 kb on + strand at 917.172 kb on + strand at 917.173 kb on - strand at 917.173 kb on - strand at 917.173 kb on - strand at 917.173 kb on - strand at 917.335 kb on + strand, within DZA65_RS04400 at 917.338 kb on + strand, within DZA65_RS04400 at 917.338 kb on + strand, within DZA65_RS04400 at 917.338 kb on + strand, within DZA65_RS04400 at 917.338 kb on + strand, within DZA65_RS04400 at 917.338 kb on + strand, within DZA65_RS04400 at 917.339 kb on - strand, within DZA65_RS04400 at 917.339 kb on - strand, within DZA65_RS04400 at 917.339 kb on - strand, within DZA65_RS04400 at 917.339 kb on - strand, within DZA65_RS04400 at 917.427 kb on - strand, within DZA65_RS04400 at 917.428 kb on + strand, within DZA65_RS04400 at 917.428 kb on + strand, within DZA65_RS04400 at 917.428 kb on + strand, within DZA65_RS04400 at 917.428 kb on + strand, within DZA65_RS04400 at 917.429 kb on - strand at 917.456 kb on + strand, within DZA65_RS04400 at 917.456 kb on + strand, within DZA65_RS04400 at 917.457 kb on - strand, within DZA65_RS04400 at 917.457 kb on - strand, within DZA65_RS04400 at 917.457 kb on - strand, within DZA65_RS04400 at 917.457 kb on - strand, within DZA65_RS04400 at 917.457 kb on - strand, within DZA65_RS04400 at 917.503 kb on - strand, within DZA65_RS04400 at 917.503 kb on - strand, within DZA65_RS04400 at 917.503 kb on - strand, within DZA65_RS04400 at 917.514 kb on + strand, within DZA65_RS04400 at 917.515 kb on - strand, within DZA65_RS04400 at 917.528 kb on - strand, within DZA65_RS04400 at 917.541 kb on - strand, within DZA65_RS04400 at 917.606 kb on + strand, within DZA65_RS04400 at 917.607 kb on - strand, within DZA65_RS04400 at 917.607 kb on - strand, within DZA65_RS04400 at 917.607 kb on - strand, within DZA65_RS04400 at 917.607 kb on - strand, within DZA65_RS04400 at 917.607 kb on - strand, within DZA65_RS04400 at 917.674 kb on + strand, within DZA65_RS04400 at 917.675 kb on - strand, within DZA65_RS04400 at 917.675 kb on - strand, within DZA65_RS04400 at 917.731 kb on + strand, within DZA65_RS04400 at 917.732 kb on - strand, within DZA65_RS04400 at 917.732 kb on - strand, within DZA65_RS04400 at 917.732 kb on - strand, within DZA65_RS04400 at 917.732 kb on - strand, within DZA65_RS04400 at 917.777 kb on - strand, within DZA65_RS04400 at 917.777 kb on - strand, within DZA65_RS04400 at 917.788 kb on + strand at 917.788 kb on + strand, within DZA65_RS04400 at 917.788 kb on + strand, within DZA65_RS04400 at 917.789 kb on - strand, within DZA65_RS04400 at 917.789 kb on - strand, within DZA65_RS04400 at 917.789 kb on - strand, within DZA65_RS04400 at 917.789 kb on - strand, within DZA65_RS04400 at 917.791 kb on + strand, within DZA65_RS04400 at 917.791 kb on + strand, within DZA65_RS04400 at 917.791 kb on + strand, within DZA65_RS04400 at 917.791 kb on + strand, within DZA65_RS04400 at 917.791 kb on + strand, within DZA65_RS04400 at 917.791 kb on + strand, within DZA65_RS04400 at 917.792 kb on - strand, within DZA65_RS04400 at 917.792 kb on - strand, within DZA65_RS04400 at 917.792 kb on - strand, within DZA65_RS04400 at 917.792 kb on - strand, within DZA65_RS04400 at 917.792 kb on - strand, within DZA65_RS04400 at 917.792 kb on - strand, within DZA65_RS04400 at 917.792 kb on - strand, within DZA65_RS04400 at 917.809 kb on + strand, within DZA65_RS04400 at 917.809 kb on + strand, within DZA65_RS04400 at 917.809 kb on + strand, within DZA65_RS04400 at 917.809 kb on + strand, within DZA65_RS04400 at 917.810 kb on - strand, within DZA65_RS04400 at 917.810 kb on - strand, within DZA65_RS04400 at 917.810 kb on - strand, within DZA65_RS04400 at 917.876 kb on + strand, within DZA65_RS04400 at 917.877 kb on - strand, within DZA65_RS04400 at 917.878 kb on + strand, within DZA65_RS04400 at 917.878 kb on + strand, within DZA65_RS04400 at 917.879 kb on - strand, within DZA65_RS04400 at 917.879 kb on - strand, within DZA65_RS04400 at 917.879 kb on - strand, within DZA65_RS04400 at 917.879 kb on - strand, within DZA65_RS04400 at 917.938 kb on - strand, within DZA65_RS04400 at 917.973 kb on + strand, within DZA65_RS04400 at 917.973 kb on + strand, within DZA65_RS04400 at 918.059 kb on + strand at 918.059 kb on + strand at 918.060 kb on - strand at 918.060 kb on - strand at 918.060 kb on - strand at 918.060 kb on - strand at 918.060 kb on - strand at 918.060 kb on - strand at 918.060 kb on - strand at 918.061 kb on + strand at 918.061 kb on + strand at 918.062 kb on - strand at 918.062 kb on - strand at 918.062 kb on - strand at 918.081 kb on - strand at 918.081 kb on - strand at 918.101 kb on + strand at 918.101 kb on + strand at 918.102 kb on - strand at 918.103 kb on + strand at 918.103 kb on + strand at 918.104 kb on - strand at 918.104 kb on - strand at 918.104 kb on - strand at 918.110 kb on - strand at 918.110 kb on - strand at 918.114 kb on + strand at 918.114 kb on + strand at 918.114 kb on + strand at 918.114 kb on + strand at 918.114 kb on + strand at 918.115 kb on - strand at 918.115 kb on - strand at 918.115 kb on - strand at 918.117 kb on + strand at 918.118 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 915,519 + DZA65_RS04385 0.85 -1.6 915,519 + DZA65_RS04385 0.85 +0.4 915,519 + DZA65_RS04385 0.85 -1.2 915,520 - DZA65_RS04385 0.85 -0.4 915,520 - DZA65_RS04385 0.85 -2.6 915,523 + DZA65_RS04385 0.85 +0.9 915,523 + DZA65_RS04385 0.85 -2.3 915,523 + DZA65_RS04385 0.85 +0.4 915,523 + DZA65_RS04385 0.85 -0.6 915,524 - DZA65_RS04385 0.85 +1.1 915,524 - DZA65_RS04385 0.85 -2.5 915,524 - DZA65_RS04385 0.85 -1.0 915,524 - DZA65_RS04385 0.85 -0.1 915,524 - DZA65_RS04385 0.85 +0.1 915,524 - DZA65_RS04385 0.85 -1.5 915,701 + +0.4 915,755 + +0.3 915,755 + -1.7 915,756 - +0.4 915,822 + DZA65_RS04390 0.24 +0.9 915,822 + DZA65_RS04390 0.24 +0.4 915,822 + DZA65_RS04390 0.24 -1.4 915,822 + DZA65_RS04390 0.24 +1.8 915,822 + DZA65_RS04390 0.24 -0.2 915,823 - DZA65_RS04390 0.24 -0.6 915,823 - DZA65_RS04390 0.24 -2.1 915,823 - DZA65_RS04390 0.24 +2.2 915,823 - DZA65_RS04390 0.24 +1.0 915,823 - DZA65_RS04390 0.24 -1.6 915,953 - DZA65_RS04390 0.70 +0.2 916,073 + -0.4 916,073 + -1.2 916,074 - +1.4 916,074 - -0.7 916,074 - -1.4 916,074 - -0.2 916,075 + -0.3 916,075 + -0.4 916,075 + -1.3 916,076 - +0.0 916,076 - +0.4 916,076 - -1.8 916,076 - -1.7 916,086 + -1.0 916,086 + +1.4 916,086 + -0.6 916,105 + -1.4 916,148 + +0.6 916,148 + -0.1 916,149 - -0.4 916,149 - -1.2 916,149 - +0.4 916,149 - +0.4 916,149 - -0.2 916,149 - -0.8 916,159 + -0.4 916,188 + -0.7 916,188 + -0.8 916,190 + +0.4 916,190 + +1.4 916,193 + +0.6 916,193 + -1.0 916,193 + -0.1 916,193 + -1.4 916,193 + -2.0 916,203 + -1.0 916,315 + -1.1 916,336 + +0.6 916,466 + -1.8 917,128 + +0.4 917,142 + -2.0 917,142 + -1.0 917,143 - +0.2 917,143 - -0.1 917,172 + -0.8 917,172 + -0.6 917,172 + +0.8 917,173 - +0.4 917,173 - -0.8 917,173 - +1.1 917,173 - +0.7 917,335 + DZA65_RS04400 0.14 +0.8 917,338 + DZA65_RS04400 0.14 -1.2 917,338 + DZA65_RS04400 0.14 +0.9 917,338 + DZA65_RS04400 0.14 +0.4 917,338 + DZA65_RS04400 0.14 +0.4 917,338 + DZA65_RS04400 0.14 -0.3 917,339 - DZA65_RS04400 0.14 +0.1 917,339 - DZA65_RS04400 0.14 -1.0 917,339 - DZA65_RS04400 0.14 -1.6 917,339 - DZA65_RS04400 0.14 -0.5 917,427 - DZA65_RS04400 0.24 -1.6 917,428 + DZA65_RS04400 0.24 +2.8 917,428 + DZA65_RS04400 0.24 +1.2 917,428 + DZA65_RS04400 0.24 -0.1 917,428 + DZA65_RS04400 0.24 +0.6 917,429 - -0.1 917,456 + DZA65_RS04400 0.28 +0.3 917,456 + DZA65_RS04400 0.28 -0.9 917,457 - DZA65_RS04400 0.28 +0.6 917,457 - DZA65_RS04400 0.28 +1.1 917,457 - DZA65_RS04400 0.28 +0.0 917,457 - DZA65_RS04400 0.28 -1.6 917,457 - DZA65_RS04400 0.28 -1.2 917,503 - DZA65_RS04400 0.33 -0.6 917,503 - DZA65_RS04400 0.33 +1.5 917,503 - DZA65_RS04400 0.33 -2.2 917,514 + DZA65_RS04400 0.34 +1.7 917,515 - DZA65_RS04400 0.34 -2.5 917,528 - DZA65_RS04400 0.36 -2.1 917,541 - DZA65_RS04400 0.38 +3.4 917,606 + DZA65_RS04400 0.45 -1.0 917,607 - DZA65_RS04400 0.45 -1.4 917,607 - DZA65_RS04400 0.45 -0.1 917,607 - DZA65_RS04400 0.45 -0.1 917,607 - DZA65_RS04400 0.45 -1.0 917,607 - DZA65_RS04400 0.45 -0.7 917,674 + DZA65_RS04400 0.53 -0.6 917,675 - DZA65_RS04400 0.53 +0.9 917,675 - DZA65_RS04400 0.53 +1.8 917,731 + DZA65_RS04400 0.59 +1.1 917,732 - DZA65_RS04400 0.60 -1.0 917,732 - DZA65_RS04400 0.60 +0.6 917,732 - DZA65_RS04400 0.60 +1.8 917,732 - DZA65_RS04400 0.60 -4.0 917,777 - DZA65_RS04400 0.65 -1.6 917,777 - DZA65_RS04400 0.65 -1.5 917,788 + -1.6 917,788 + DZA65_RS04400 0.66 +0.9 917,788 + DZA65_RS04400 0.66 +0.8 917,789 - DZA65_RS04400 0.66 +0.8 917,789 - DZA65_RS04400 0.66 -0.5 917,789 - DZA65_RS04400 0.66 -0.2 917,789 - DZA65_RS04400 0.66 -1.2 917,791 + DZA65_RS04400 0.66 -1.7 917,791 + DZA65_RS04400 0.66 +1.4 917,791 + DZA65_RS04400 0.66 -0.4 917,791 + DZA65_RS04400 0.66 -0.2 917,791 + DZA65_RS04400 0.66 -2.4 917,791 + DZA65_RS04400 0.66 -0.2 917,792 - DZA65_RS04400 0.67 -0.2 917,792 - DZA65_RS04400 0.67 -1.2 917,792 - DZA65_RS04400 0.67 -1.0 917,792 - DZA65_RS04400 0.67 -0.4 917,792 - DZA65_RS04400 0.67 -2.3 917,792 - DZA65_RS04400 0.67 +0.7 917,792 - DZA65_RS04400 0.67 +0.6 917,809 + DZA65_RS04400 0.69 +1.0 917,809 + DZA65_RS04400 0.69 -0.6 917,809 + DZA65_RS04400 0.69 -0.2 917,809 + DZA65_RS04400 0.69 +1.0 917,810 - DZA65_RS04400 0.69 -2.1 917,810 - DZA65_RS04400 0.69 -2.0 917,810 - DZA65_RS04400 0.69 -0.0 917,876 + DZA65_RS04400 0.76 +1.0 917,877 - DZA65_RS04400 0.76 +1.8 917,878 + DZA65_RS04400 0.77 +0.6 917,878 + DZA65_RS04400 0.77 +0.3 917,879 - DZA65_RS04400 0.77 +2.9 917,879 - DZA65_RS04400 0.77 +1.1 917,879 - DZA65_RS04400 0.77 -0.2 917,879 - DZA65_RS04400 0.77 -0.9 917,938 - DZA65_RS04400 0.83 -2.4 917,973 + DZA65_RS04400 0.88 +2.1 917,973 + DZA65_RS04400 0.88 -2.2 918,059 + -1.8 918,059 + +0.1 918,060 - -0.6 918,060 - +0.6 918,060 - -1.6 918,060 - +2.2 918,060 - +0.4 918,060 - -1.2 918,060 - +0.3 918,061 + -0.8 918,061 + -2.0 918,062 - -1.4 918,062 - +0.4 918,062 - -0.3 918,081 - -0.4 918,081 - +0.6 918,101 + -1.2 918,101 + +0.9 918,102 - -1.2 918,103 + -2.1 918,103 + -0.4 918,104 - -0.1 918,104 - -1.0 918,104 - -1.3 918,110 - +1.1 918,110 - +0.1 918,114 + -1.6 918,114 + +0.6 918,114 + -1.2 918,114 + +0.7 918,114 + -1.1 918,115 - +0.4 918,115 - +0.6 918,115 - -2.1 918,117 + -0.2 918,118 - -2.3
Or see this region's nucleotide sequence