Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02315 and DZA65_RS02320 are separated by 45 nucleotides DZA65_RS02320 and DZA65_RS02325 are separated by 9 nucleotides DZA65_RS02325 and DZA65_RS02330 are separated by 105 nucleotides
DZA65_RS02315: DZA65_RS02315 - ABC transporter substrate-binding protein, at 499,852 to 501,399
_RS02315
DZA65_RS02320: DZA65_RS02320 - ABC transporter permease, at 501,445 to 502,362
_RS02320
DZA65_RS02325: DZA65_RS02325 - ABC transporter permease, at 502,372 to 503,298
_RS02325
DZA65_RS02330: DZA65_RS02330 - ABC transporter ATP-binding protein, at 503,404 to 504,381
_RS02330
Position (kb) 502
503
504 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 501.397 kb on + strand at 501.397 kb on + strand at 501.398 kb on - strand at 501.398 kb on - strand at 501.398 kb on - strand at 501.424 kb on + strand at 501.424 kb on + strand at 501.424 kb on + strand at 501.424 kb on + strand at 501.424 kb on + strand at 501.424 kb on + strand at 501.424 kb on + strand at 501.424 kb on + strand at 501.425 kb on - strand at 501.425 kb on - strand at 501.425 kb on - strand at 501.432 kb on - strand at 501.432 kb on - strand at 501.444 kb on + strand at 501.454 kb on + strand at 501.454 kb on + strand at 501.455 kb on - strand at 501.455 kb on - strand at 501.455 kb on - strand at 501.455 kb on - strand at 501.615 kb on + strand, within DZA65_RS02320 at 501.615 kb on + strand, within DZA65_RS02320 at 501.615 kb on + strand, within DZA65_RS02320 at 501.685 kb on + strand, within DZA65_RS02320 at 501.685 kb on + strand, within DZA65_RS02320 at 501.685 kb on + strand, within DZA65_RS02320 at 501.723 kb on + strand, within DZA65_RS02320 at 501.723 kb on + strand, within DZA65_RS02320 at 501.724 kb on - strand, within DZA65_RS02320 at 501.724 kb on - strand, within DZA65_RS02320 at 501.738 kb on + strand, within DZA65_RS02320 at 501.738 kb on + strand, within DZA65_RS02320 at 501.739 kb on - strand, within DZA65_RS02320 at 501.739 kb on - strand, within DZA65_RS02320 at 501.900 kb on + strand, within DZA65_RS02320 at 501.900 kb on + strand, within DZA65_RS02320 at 501.901 kb on - strand, within DZA65_RS02320 at 501.901 kb on - strand, within DZA65_RS02320 at 501.901 kb on - strand at 501.901 kb on - strand, within DZA65_RS02320 at 501.901 kb on - strand, within DZA65_RS02320 at 501.901 kb on - strand, within DZA65_RS02320 at 501.945 kb on + strand, within DZA65_RS02320 at 501.986 kb on - strand, within DZA65_RS02320 at 501.986 kb on - strand, within DZA65_RS02320 at 501.988 kb on + strand, within DZA65_RS02320 at 501.988 kb on + strand, within DZA65_RS02320 at 501.989 kb on - strand, within DZA65_RS02320 at 501.989 kb on - strand, within DZA65_RS02320 at 502.051 kb on + strand, within DZA65_RS02320 at 502.051 kb on + strand, within DZA65_RS02320 at 502.051 kb on + strand, within DZA65_RS02320 at 502.052 kb on - strand, within DZA65_RS02320 at 502.089 kb on + strand, within DZA65_RS02320 at 502.164 kb on + strand, within DZA65_RS02320 at 502.165 kb on - strand, within DZA65_RS02320 at 502.165 kb on - strand, within DZA65_RS02320 at 502.165 kb on - strand, within DZA65_RS02320 at 502.165 kb on - strand, within DZA65_RS02320 at 502.294 kb on + strand at 502.294 kb on + strand at 502.294 kb on + strand at 502.294 kb on + strand at 502.295 kb on - strand at 502.335 kb on - strand at 502.337 kb on + strand at 502.337 kb on + strand at 502.338 kb on - strand at 502.338 kb on - strand at 502.338 kb on - strand at 502.338 kb on - strand at 502.338 kb on - strand at 502.338 kb on - strand at 502.338 kb on - strand at 502.338 kb on - strand at 502.360 kb on + strand at 502.360 kb on + strand at 502.385 kb on + strand at 502.385 kb on + strand at 502.386 kb on - strand at 502.488 kb on + strand, within DZA65_RS02325 at 502.535 kb on + strand, within DZA65_RS02325 at 502.535 kb on + strand, within DZA65_RS02325 at 502.536 kb on - strand, within DZA65_RS02325 at 502.536 kb on - strand, within DZA65_RS02325 at 502.568 kb on - strand, within DZA65_RS02325 at 502.769 kb on - strand, within DZA65_RS02325 at 502.769 kb on - strand, within DZA65_RS02325 at 502.801 kb on + strand, within DZA65_RS02325 at 502.801 kb on + strand, within DZA65_RS02325 at 502.801 kb on + strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.814 kb on + strand, within DZA65_RS02325 at 502.814 kb on + strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.956 kb on - strand, within DZA65_RS02325 at 503.006 kb on + strand, within DZA65_RS02325 at 503.126 kb on + strand, within DZA65_RS02325 at 503.127 kb on - strand at 503.159 kb on + strand, within DZA65_RS02325 at 503.169 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.275 kb on - strand at 503.324 kb on + strand at 503.324 kb on + strand at 503.324 kb on + strand at 503.325 kb on - strand at 503.325 kb on - strand at 503.331 kb on + strand at 503.331 kb on + strand at 503.331 kb on + strand at 503.331 kb on + strand at 503.331 kb on + strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.343 kb on + strand at 503.343 kb on + strand at 503.343 kb on + strand at 503.599 kb on - strand, within DZA65_RS02330 at 503.798 kb on - strand, within DZA65_RS02330 at 503.798 kb on - strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.887 kb on - strand, within DZA65_RS02330 at 504.082 kb on + strand, within DZA65_RS02330 at 504.082 kb on + strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.145 kb on + strand, within DZA65_RS02330 at 504.145 kb on + strand, within DZA65_RS02330 at 504.148 kb on - strand, within DZA65_RS02330 at 504.168 kb on + strand, within DZA65_RS02330 at 504.168 kb on + strand, within DZA65_RS02330 at 504.169 kb on - strand, within DZA65_RS02330 at 504.169 kb on - strand, within DZA65_RS02330 at 504.169 kb on - strand, within DZA65_RS02330 at 504.264 kb on + strand, within DZA65_RS02330 at 504.264 kb on + strand, within DZA65_RS02330
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 501,397 + +0.4 501,397 + -0.2 501,398 - -0.7 501,398 - -1.7 501,398 - +0.4 501,424 + -1.9 501,424 + +0.2 501,424 + +0.7 501,424 + -1.3 501,424 + +1.1 501,424 + -1.3 501,424 + -1.1 501,424 + +0.4 501,425 - +1.0 501,425 - -0.2 501,425 - -0.2 501,432 - -1.3 501,432 - +1.2 501,444 + -1.2 501,454 + -1.3 501,454 + +2.4 501,455 - -1.4 501,455 - -0.2 501,455 - +0.8 501,455 - -0.9 501,615 + DZA65_RS02320 0.19 -0.4 501,615 + DZA65_RS02320 0.19 +1.0 501,615 + DZA65_RS02320 0.19 +0.2 501,685 + DZA65_RS02320 0.26 -0.6 501,685 + DZA65_RS02320 0.26 +2.2 501,685 + DZA65_RS02320 0.26 +1.4 501,723 + DZA65_RS02320 0.30 -1.2 501,723 + DZA65_RS02320 0.30 -1.2 501,724 - DZA65_RS02320 0.30 -0.6 501,724 - DZA65_RS02320 0.30 -0.2 501,738 + DZA65_RS02320 0.32 +0.4 501,738 + DZA65_RS02320 0.32 +1.0 501,739 - DZA65_RS02320 0.32 -0.6 501,739 - DZA65_RS02320 0.32 +0.8 501,900 + DZA65_RS02320 0.50 -1.4 501,900 + DZA65_RS02320 0.50 +0.7 501,901 - DZA65_RS02320 0.50 -0.2 501,901 - DZA65_RS02320 0.50 +0.8 501,901 - -1.6 501,901 - DZA65_RS02320 0.50 -1.4 501,901 - DZA65_RS02320 0.50 -0.3 501,901 - DZA65_RS02320 0.50 +0.6 501,945 + DZA65_RS02320 0.54 -1.6 501,986 - DZA65_RS02320 0.59 +0.4 501,986 - DZA65_RS02320 0.59 +0.8 501,988 + DZA65_RS02320 0.59 +0.0 501,988 + DZA65_RS02320 0.59 +0.8 501,989 - DZA65_RS02320 0.59 +0.1 501,989 - DZA65_RS02320 0.59 +0.8 502,051 + DZA65_RS02320 0.66 -2.2 502,051 + DZA65_RS02320 0.66 +0.4 502,051 + DZA65_RS02320 0.66 +0.7 502,052 - DZA65_RS02320 0.66 -0.0 502,089 + DZA65_RS02320 0.70 +2.0 502,164 + DZA65_RS02320 0.78 -1.7 502,165 - DZA65_RS02320 0.78 -0.9 502,165 - DZA65_RS02320 0.78 +0.6 502,165 - DZA65_RS02320 0.78 -1.2 502,165 - DZA65_RS02320 0.78 +2.1 502,294 + -0.7 502,294 + -0.4 502,294 + -0.2 502,294 + -0.1 502,295 - -2.0 502,335 - -1.6 502,337 + -0.6 502,337 + +0.6 502,338 - +0.7 502,338 - +0.2 502,338 - -1.2 502,338 - +1.4 502,338 - +0.4 502,338 - -0.2 502,338 - -1.9 502,338 - -2.7 502,360 + -0.6 502,360 + -3.0 502,385 + +1.7 502,385 + +2.0 502,386 - +0.7 502,488 + DZA65_RS02325 0.13 -0.2 502,535 + DZA65_RS02325 0.18 -2.3 502,535 + DZA65_RS02325 0.18 -0.9 502,536 - DZA65_RS02325 0.18 -1.7 502,536 - DZA65_RS02325 0.18 -0.5 502,568 - DZA65_RS02325 0.21 -1.7 502,769 - DZA65_RS02325 0.43 +1.7 502,769 - DZA65_RS02325 0.43 +1.4 502,801 + DZA65_RS02325 0.46 -0.9 502,801 + DZA65_RS02325 0.46 -0.3 502,801 + DZA65_RS02325 0.46 -0.2 502,802 - DZA65_RS02325 0.46 -0.3 502,802 - DZA65_RS02325 0.46 -1.3 502,802 - DZA65_RS02325 0.46 +0.3 502,802 - DZA65_RS02325 0.46 -2.3 502,802 - DZA65_RS02325 0.46 +0.4 502,802 - DZA65_RS02325 0.46 +1.1 502,802 - DZA65_RS02325 0.46 -0.6 502,814 + DZA65_RS02325 0.48 -0.9 502,814 + DZA65_RS02325 0.48 +1.9 502,815 - DZA65_RS02325 0.48 -1.4 502,815 - DZA65_RS02325 0.48 +1.3 502,815 - DZA65_RS02325 0.48 -1.0 502,815 - DZA65_RS02325 0.48 -0.9 502,815 - DZA65_RS02325 0.48 +0.4 502,890 + DZA65_RS02325 0.56 +1.4 502,890 + DZA65_RS02325 0.56 -0.2 502,890 + DZA65_RS02325 0.56 -1.3 502,890 + DZA65_RS02325 0.56 -0.9 502,890 + +1.7 502,890 + DZA65_RS02325 0.56 -0.9 502,890 + DZA65_RS02325 0.56 -0.9 502,890 + DZA65_RS02325 0.56 -2.4 502,890 + DZA65_RS02325 0.56 -0.9 502,890 + DZA65_RS02325 0.56 -1.6 502,890 + DZA65_RS02325 0.56 +1.4 502,891 - DZA65_RS02325 0.56 +1.4 502,891 - DZA65_RS02325 0.56 -0.6 502,891 - DZA65_RS02325 0.56 +1.4 502,891 - DZA65_RS02325 0.56 +0.4 502,891 - DZA65_RS02325 0.56 -1.7 502,956 - DZA65_RS02325 0.63 +0.6 503,006 + DZA65_RS02325 0.68 -1.9 503,126 + DZA65_RS02325 0.81 +0.4 503,127 - +0.8 503,159 + DZA65_RS02325 0.85 +1.0 503,169 + DZA65_RS02325 0.86 +1.2 503,176 + DZA65_RS02325 0.87 +0.3 503,176 + DZA65_RS02325 0.87 +0.8 503,176 + DZA65_RS02325 0.87 +1.2 503,176 + DZA65_RS02325 0.87 +0.7 503,176 + DZA65_RS02325 0.87 -1.4 503,176 + DZA65_RS02325 0.87 -0.6 503,176 + DZA65_RS02325 0.87 -0.6 503,176 + DZA65_RS02325 0.87 -0.2 503,177 - DZA65_RS02325 0.87 -1.9 503,177 - DZA65_RS02325 0.87 +0.4 503,177 - DZA65_RS02325 0.87 -0.9 503,177 - DZA65_RS02325 0.87 +0.3 503,177 - DZA65_RS02325 0.87 +0.4 503,177 - DZA65_RS02325 0.87 -0.9 503,177 - DZA65_RS02325 0.87 +0.6 503,177 - DZA65_RS02325 0.87 -1.4 503,177 - DZA65_RS02325 0.87 +0.4 503,177 - DZA65_RS02325 0.87 -0.6 503,177 - DZA65_RS02325 0.87 -2.2 503,177 - DZA65_RS02325 0.87 +0.7 503,177 - DZA65_RS02325 0.87 -1.8 503,177 - DZA65_RS02325 0.87 +0.4 503,177 - DZA65_RS02325 0.87 +0.6 503,275 - +0.5 503,324 + -2.0 503,324 + -0.2 503,324 + +2.2 503,325 - +0.8 503,325 - -0.6 503,331 + -1.4 503,331 + -1.0 503,331 + -2.6 503,331 + -0.6 503,331 + +1.4 503,332 - +0.4 503,332 - -0.9 503,332 - -0.4 503,332 - -0.9 503,332 - +0.4 503,332 - +0.9 503,332 - -2.6 503,337 + +0.7 503,337 + -1.2 503,337 + -1.3 503,337 + +0.4 503,337 + -0.9 503,337 + +3.0 503,337 + -0.2 503,337 + -0.1 503,337 + +0.7 503,337 + -0.2 503,337 + +0.4 503,337 + -1.9 503,337 + -0.5 503,337 + -0.5 503,337 + +0.6 503,337 + -1.6 503,337 + -1.4 503,337 + -2.4 503,337 + -2.4 503,337 + -1.3 503,337 + +0.6 503,338 - +2.4 503,338 - +0.2 503,338 - -0.5 503,338 - +0.3 503,338 - -2.1 503,338 - -0.4 503,338 - +0.6 503,338 - -0.1 503,338 - -2.0 503,338 - -0.6 503,338 - -0.8 503,338 - +0.6 503,338 - +1.8 503,338 - -1.0 503,338 - +0.6 503,338 - -1.2 503,343 + +2.2 503,343 + -0.6 503,343 + +1.0 503,599 - DZA65_RS02330 0.20 +0.2 503,798 - DZA65_RS02330 0.40 +0.7 503,798 - DZA65_RS02330 0.40 +0.7 503,886 + DZA65_RS02330 0.49 -1.2 503,886 + DZA65_RS02330 0.49 -1.6 503,886 + DZA65_RS02330 0.49 -0.3 503,886 + DZA65_RS02330 0.49 +1.4 503,886 + DZA65_RS02330 0.49 +0.2 503,886 + DZA65_RS02330 0.49 -0.0 503,887 - DZA65_RS02330 0.49 -1.6 504,082 + DZA65_RS02330 0.69 -1.6 504,082 + DZA65_RS02330 0.69 +0.8 504,083 - DZA65_RS02330 0.69 -1.9 504,083 - DZA65_RS02330 0.69 -0.6 504,083 - DZA65_RS02330 0.69 -1.5 504,083 - DZA65_RS02330 0.69 -0.6 504,083 - DZA65_RS02330 0.69 +1.1 504,083 - DZA65_RS02330 0.69 +1.1 504,083 - DZA65_RS02330 0.69 -0.2 504,083 - DZA65_RS02330 0.69 -1.4 504,083 - DZA65_RS02330 0.69 -1.2 504,083 - DZA65_RS02330 0.69 +0.2 504,083 - DZA65_RS02330 0.69 -0.4 504,083 - DZA65_RS02330 0.69 +0.4 504,145 + DZA65_RS02330 0.76 +0.9 504,145 + DZA65_RS02330 0.76 +1.4 504,148 - DZA65_RS02330 0.76 +0.8 504,168 + DZA65_RS02330 0.78 -0.2 504,168 + DZA65_RS02330 0.78 -1.2 504,169 - DZA65_RS02330 0.78 -1.6 504,169 - DZA65_RS02330 0.78 +0.1 504,169 - DZA65_RS02330 0.78 +1.4 504,264 + DZA65_RS02330 0.88 -1.7 504,264 + DZA65_RS02330 0.88 +0.1
Or see this region's nucleotide sequence