Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02080 and DZA65_RS02085 are separated by 99 nucleotides DZA65_RS02085 and DZA65_RS02090 are separated by 43 nucleotides
DZA65_RS02080: DZA65_RS02080 - tyrosine-type recombinase/integrase, at 458,861 to 460,129
_RS02080
DZA65_RS02085: DZA65_RS02085 - dNTP triphosphohydrolase, at 460,229 to 461,446
_RS02085
DZA65_RS02090: DZA65_RS02090 - TIGR04141 family sporadically distributed protein, at 461,490 to 463,118
_RS02090
Position (kb) 460
461
462 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 459.248 kb on - strand, within DZA65_RS02080 at 459.248 kb on - strand, within DZA65_RS02080 at 459.248 kb on - strand, within DZA65_RS02080 at 459.248 kb on - strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.251 kb on - strand, within DZA65_RS02080 at 459.251 kb on - strand, within DZA65_RS02080 at 459.251 kb on - strand at 459.251 kb on - strand, within DZA65_RS02080 at 459.251 kb on - strand, within DZA65_RS02080 at 459.491 kb on - strand, within DZA65_RS02080 at 459.525 kb on - strand, within DZA65_RS02080 at 459.525 kb on - strand, within DZA65_RS02080 at 459.525 kb on - strand, within DZA65_RS02080 at 459.555 kb on + strand, within DZA65_RS02080 at 459.555 kb on + strand, within DZA65_RS02080 at 459.556 kb on - strand, within DZA65_RS02080 at 459.563 kb on - strand, within DZA65_RS02080 at 459.563 kb on - strand, within DZA65_RS02080 at 459.563 kb on - strand, within DZA65_RS02080 at 459.563 kb on - strand, within DZA65_RS02080 at 459.578 kb on - strand, within DZA65_RS02080 at 459.594 kb on + strand, within DZA65_RS02080 at 459.594 kb on + strand, within DZA65_RS02080 at 459.594 kb on + strand, within DZA65_RS02080 at 459.595 kb on - strand, within DZA65_RS02080 at 459.595 kb on - strand, within DZA65_RS02080 at 459.626 kb on - strand, within DZA65_RS02080 at 459.626 kb on - strand, within DZA65_RS02080 at 459.664 kb on + strand, within DZA65_RS02080 at 459.665 kb on - strand, within DZA65_RS02080 at 459.726 kb on + strand, within DZA65_RS02080 at 459.741 kb on + strand, within DZA65_RS02080 at 459.741 kb on + strand, within DZA65_RS02080 at 459.742 kb on - strand, within DZA65_RS02080 at 459.760 kb on + strand, within DZA65_RS02080 at 459.863 kb on + strand, within DZA65_RS02080 at 459.863 kb on + strand, within DZA65_RS02080 at 459.864 kb on - strand, within DZA65_RS02080 at 459.882 kb on + strand, within DZA65_RS02080 at 459.882 kb on + strand, within DZA65_RS02080 at 459.882 kb on + strand, within DZA65_RS02080 at 459.882 kb on + strand, within DZA65_RS02080 at 459.882 kb on + strand, within DZA65_RS02080 at 459.883 kb on - strand, within DZA65_RS02080 at 459.883 kb on - strand, within DZA65_RS02080 at 459.883 kb on - strand, within DZA65_RS02080 at 459.901 kb on + strand, within DZA65_RS02080 at 459.904 kb on + strand, within DZA65_RS02080 at 459.905 kb on - strand, within DZA65_RS02080 at 459.921 kb on + strand, within DZA65_RS02080 at 459.921 kb on + strand, within DZA65_RS02080 at 459.921 kb on + strand, within DZA65_RS02080 at 459.922 kb on - strand, within DZA65_RS02080 at 459.922 kb on - strand, within DZA65_RS02080 at 459.954 kb on + strand, within DZA65_RS02080 at 459.955 kb on - strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.003 kb on + strand at 460.003 kb on + strand at 460.062 kb on - strand at 460.108 kb on - strand at 460.119 kb on + strand at 460.120 kb on - strand at 460.151 kb on - strand at 460.191 kb on - strand at 460.201 kb on + strand at 460.204 kb on + strand at 460.207 kb on + strand at 460.221 kb on + strand at 460.228 kb on + strand at 460.233 kb on - strand at 460.233 kb on - strand at 460.279 kb on - strand at 460.281 kb on + strand at 460.342 kb on + strand at 460.342 kb on + strand at 460.343 kb on - strand at 460.353 kb on - strand, within DZA65_RS02085 at 460.353 kb on - strand, within DZA65_RS02085 at 460.415 kb on - strand, within DZA65_RS02085 at 460.416 kb on + strand, within DZA65_RS02085 at 460.417 kb on - strand, within DZA65_RS02085 at 460.442 kb on - strand, within DZA65_RS02085 at 460.454 kb on - strand, within DZA65_RS02085 at 460.454 kb on - strand, within DZA65_RS02085 at 460.458 kb on + strand, within DZA65_RS02085 at 460.485 kb on + strand, within DZA65_RS02085 at 460.485 kb on + strand, within DZA65_RS02085 at 460.486 kb on - strand, within DZA65_RS02085 at 460.503 kb on + strand, within DZA65_RS02085 at 460.536 kb on + strand, within DZA65_RS02085 at 460.812 kb on + strand, within DZA65_RS02085 at 460.813 kb on - strand, within DZA65_RS02085 at 460.907 kb on + strand, within DZA65_RS02085 at 460.908 kb on - strand, within DZA65_RS02085 at 460.908 kb on - strand, within DZA65_RS02085 at 460.978 kb on - strand, within DZA65_RS02085 at 460.978 kb on - strand, within DZA65_RS02085 at 460.986 kb on + strand, within DZA65_RS02085 at 460.987 kb on - strand, within DZA65_RS02085 at 461.083 kb on - strand, within DZA65_RS02085 at 461.083 kb on - strand, within DZA65_RS02085 at 461.105 kb on - strand, within DZA65_RS02085 at 461.112 kb on + strand, within DZA65_RS02085 at 461.131 kb on + strand, within DZA65_RS02085 at 461.134 kb on - strand, within DZA65_RS02085 at 461.150 kb on - strand, within DZA65_RS02085 at 461.166 kb on + strand at 461.274 kb on - strand, within DZA65_RS02085 at 461.275 kb on + strand, within DZA65_RS02085 at 461.279 kb on - strand, within DZA65_RS02085 at 461.281 kb on + strand, within DZA65_RS02085 at 461.282 kb on - strand, within DZA65_RS02085 at 461.302 kb on - strand, within DZA65_RS02085 at 461.305 kb on - strand, within DZA65_RS02085 at 461.338 kb on + strand at 461.390 kb on - strand at 461.434 kb on - strand at 461.528 kb on - strand at 461.528 kb on - strand at 461.632 kb on + strand at 461.751 kb on - strand, within DZA65_RS02090 at 461.895 kb on + strand, within DZA65_RS02090 at 461.896 kb on - strand, within DZA65_RS02090 at 461.904 kb on - strand, within DZA65_RS02090 at 461.931 kb on - strand, within DZA65_RS02090 at 462.262 kb on + strand, within DZA65_RS02090 at 462.262 kb on + strand, within DZA65_RS02090 at 462.263 kb on - strand, within DZA65_RS02090 at 462.300 kb on - strand, within DZA65_RS02090 at 462.303 kb on + strand, within DZA65_RS02090
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 459,248 - DZA65_RS02080 0.30 +2.2 459,248 - DZA65_RS02080 0.30 +0.5 459,248 - DZA65_RS02080 0.30 -0.7 459,248 - DZA65_RS02080 0.30 -0.3 459,250 + DZA65_RS02080 0.31 +2.8 459,250 + DZA65_RS02080 0.31 +2.2 459,250 + DZA65_RS02080 0.31 -1.0 459,250 + DZA65_RS02080 0.31 -0.0 459,250 + DZA65_RS02080 0.31 -0.1 459,251 - DZA65_RS02080 0.31 -1.1 459,251 - DZA65_RS02080 0.31 -0.7 459,251 - +0.9 459,251 - DZA65_RS02080 0.31 +0.4 459,251 - DZA65_RS02080 0.31 -2.4 459,491 - DZA65_RS02080 0.50 -0.9 459,525 - DZA65_RS02080 0.52 +0.5 459,525 - DZA65_RS02080 0.52 -0.1 459,525 - DZA65_RS02080 0.52 -2.2 459,555 + DZA65_RS02080 0.55 +0.2 459,555 + DZA65_RS02080 0.55 -2.2 459,556 - DZA65_RS02080 0.55 -2.9 459,563 - DZA65_RS02080 0.55 -1.7 459,563 - DZA65_RS02080 0.55 +0.7 459,563 - DZA65_RS02080 0.55 +0.9 459,563 - DZA65_RS02080 0.55 +0.1 459,578 - DZA65_RS02080 0.57 -1.5 459,594 + DZA65_RS02080 0.58 -2.1 459,594 + DZA65_RS02080 0.58 -2.0 459,594 + DZA65_RS02080 0.58 -0.7 459,595 - DZA65_RS02080 0.58 +1.0 459,595 - DZA65_RS02080 0.58 -1.1 459,626 - DZA65_RS02080 0.60 +1.2 459,626 - DZA65_RS02080 0.60 +0.0 459,664 + DZA65_RS02080 0.63 -0.9 459,665 - DZA65_RS02080 0.63 +1.0 459,726 + DZA65_RS02080 0.68 +0.5 459,741 + DZA65_RS02080 0.69 -1.1 459,741 + DZA65_RS02080 0.69 -3.1 459,742 - DZA65_RS02080 0.69 -2.0 459,760 + DZA65_RS02080 0.71 -2.4 459,863 + DZA65_RS02080 0.79 +0.3 459,863 + DZA65_RS02080 0.79 -0.3 459,864 - DZA65_RS02080 0.79 +2.0 459,882 + DZA65_RS02080 0.80 -1.4 459,882 + DZA65_RS02080 0.80 -2.6 459,882 + DZA65_RS02080 0.80 -0.1 459,882 + DZA65_RS02080 0.80 +0.1 459,882 + DZA65_RS02080 0.80 +0.3 459,883 - DZA65_RS02080 0.81 -0.3 459,883 - DZA65_RS02080 0.81 +0.9 459,883 - DZA65_RS02080 0.81 -0.5 459,901 + DZA65_RS02080 0.82 -1.9 459,904 + DZA65_RS02080 0.82 -0.3 459,905 - DZA65_RS02080 0.82 -3.7 459,921 + DZA65_RS02080 0.84 -0.5 459,921 + DZA65_RS02080 0.84 +0.9 459,921 + DZA65_RS02080 0.84 -0.3 459,922 - DZA65_RS02080 0.84 +0.5 459,922 - DZA65_RS02080 0.84 +0.9 459,954 + DZA65_RS02080 0.86 -0.2 459,955 - DZA65_RS02080 0.86 -0.5 460,001 + DZA65_RS02080 0.90 +1.0 460,001 + DZA65_RS02080 0.90 -1.1 460,001 + DZA65_RS02080 0.90 +2.5 460,001 + DZA65_RS02080 0.90 +4.2 460,001 + DZA65_RS02080 0.90 -0.2 460,001 + DZA65_RS02080 0.90 +0.1 460,001 + DZA65_RS02080 0.90 -2.1 460,001 + DZA65_RS02080 0.90 +0.5 460,001 + DZA65_RS02080 0.90 -0.5 460,002 - DZA65_RS02080 0.90 -1.9 460,002 - DZA65_RS02080 0.90 -1.8 460,002 - DZA65_RS02080 0.90 -0.9 460,002 - DZA65_RS02080 0.90 +1.9 460,002 - DZA65_RS02080 0.90 +1.0 460,002 - DZA65_RS02080 0.90 -1.9 460,002 - DZA65_RS02080 0.90 +0.0 460,002 - DZA65_RS02080 0.90 -1.4 460,002 - DZA65_RS02080 0.90 +2.5 460,002 - DZA65_RS02080 0.90 +1.7 460,002 - DZA65_RS02080 0.90 +1.0 460,003 + -2.1 460,003 + +0.4 460,062 - -1.3 460,108 - +0.5 460,119 + -0.1 460,120 - +2.8 460,151 - +1.5 460,191 - +0.1 460,201 + +0.5 460,204 + -0.1 460,207 + +1.2 460,221 + -0.9 460,228 + -1.3 460,233 - -0.5 460,233 - -0.2 460,279 - +0.5 460,281 + +1.1 460,342 + +0.5 460,342 + -0.5 460,343 - -2.1 460,353 - DZA65_RS02085 0.10 +0.1 460,353 - DZA65_RS02085 0.10 +0.5 460,415 - DZA65_RS02085 0.15 -0.1 460,416 + DZA65_RS02085 0.15 -1.5 460,417 - DZA65_RS02085 0.15 -1.1 460,442 - DZA65_RS02085 0.17 +0.9 460,454 - DZA65_RS02085 0.18 +2.5 460,454 - DZA65_RS02085 0.18 +1.5 460,458 + DZA65_RS02085 0.19 +0.9 460,485 + DZA65_RS02085 0.21 -1.1 460,485 + DZA65_RS02085 0.21 +0.5 460,486 - DZA65_RS02085 0.21 -0.1 460,503 + DZA65_RS02085 0.22 +0.0 460,536 + DZA65_RS02085 0.25 -0.5 460,812 + DZA65_RS02085 0.48 +0.6 460,813 - DZA65_RS02085 0.48 -2.6 460,907 + DZA65_RS02085 0.56 -0.9 460,908 - DZA65_RS02085 0.56 +1.5 460,908 - DZA65_RS02085 0.56 -0.4 460,978 - DZA65_RS02085 0.61 +2.2 460,978 - DZA65_RS02085 0.61 -1.3 460,986 + DZA65_RS02085 0.62 +0.7 460,987 - DZA65_RS02085 0.62 +1.8 461,083 - DZA65_RS02085 0.70 -3.2 461,083 - DZA65_RS02085 0.70 -0.9 461,105 - DZA65_RS02085 0.72 -1.1 461,112 + DZA65_RS02085 0.72 -0.9 461,131 + DZA65_RS02085 0.74 -1.1 461,134 - DZA65_RS02085 0.74 +0.5 461,150 - DZA65_RS02085 0.76 +0.5 461,166 + -1.1 461,274 - DZA65_RS02085 0.86 -0.3 461,275 + DZA65_RS02085 0.86 -2.1 461,279 - DZA65_RS02085 0.86 -2.0 461,281 + DZA65_RS02085 0.86 -0.6 461,282 - DZA65_RS02085 0.86 -1.3 461,302 - DZA65_RS02085 0.88 -2.6 461,305 - DZA65_RS02085 0.88 -2.6 461,338 + -1.3 461,390 - -0.7 461,434 - +0.5 461,528 - -0.3 461,528 - -0.0 461,632 + +0.3 461,751 - DZA65_RS02090 0.16 -0.5 461,895 + DZA65_RS02090 0.25 -1.1 461,896 - DZA65_RS02090 0.25 -1.5 461,904 - DZA65_RS02090 0.25 -2.0 461,931 - DZA65_RS02090 0.27 +1.1 462,262 + DZA65_RS02090 0.47 -0.9 462,262 + DZA65_RS02090 0.47 -0.5 462,263 - DZA65_RS02090 0.47 +1.7 462,300 - DZA65_RS02090 0.50 +3.2 462,303 + DZA65_RS02090 0.50 -0.7
Or see this region's nucleotide sequence