Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01460 and DZA65_RS01465 are separated by 12 nucleotides DZA65_RS01465 and DZA65_RS01470 are separated by 114 nucleotides DZA65_RS01470 and DZA65_RS01475 are separated by 29 nucleotides DZA65_RS01475 and DZA65_RS01480 are separated by 190 nucleotides
DZA65_RS01460: DZA65_RS01460 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 323,342 to 325,291
_RS01460
DZA65_RS01465: DZA65_RS01465 - DUF1543 domain-containing protein, at 325,304 to 325,804
_RS01465
DZA65_RS01470: DZA65_RS01470 - LysE family transporter, at 325,919 to 326,545
_RS01470
DZA65_RS01475: DZA65_RS01475 - ribosome-associated protein, at 326,575 to 327,123
_RS01475
DZA65_RS01480: DZA65_RS01480 - metalloprotease PmbA, at 327,314 to 328,654
_RS01480
Position (kb) 325
326
327 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 324.959 kb on + strand, within DZA65_RS01460 at 324.959 kb on + strand, within DZA65_RS01460 at 324.959 kb on + strand, within DZA65_RS01460 at 324.959 kb on + strand, within DZA65_RS01460 at 324.960 kb on - strand, within DZA65_RS01460 at 325.066 kb on - strand, within DZA65_RS01460 at 325.187 kb on + strand at 325.270 kb on + strand at 325.270 kb on + strand at 325.270 kb on + strand at 325.270 kb on + strand at 325.270 kb on + strand at 325.270 kb on + strand at 325.271 kb on - strand at 325.271 kb on - strand at 325.271 kb on - strand at 325.289 kb on + strand at 325.306 kb on - strand at 325.445 kb on + strand, within DZA65_RS01465 at 325.445 kb on + strand, within DZA65_RS01465 at 325.445 kb on + strand, within DZA65_RS01465 at 325.446 kb on - strand, within DZA65_RS01465 at 325.446 kb on - strand at 325.446 kb on - strand, within DZA65_RS01465 at 325.446 kb on - strand, within DZA65_RS01465 at 325.446 kb on - strand, within DZA65_RS01465 at 325.480 kb on + strand, within DZA65_RS01465 at 325.480 kb on + strand, within DZA65_RS01465 at 325.481 kb on - strand, within DZA65_RS01465 at 325.481 kb on - strand, within DZA65_RS01465 at 325.509 kb on - strand, within DZA65_RS01465 at 325.612 kb on + strand, within DZA65_RS01465 at 325.612 kb on + strand, within DZA65_RS01465 at 325.612 kb on + strand, within DZA65_RS01465 at 325.613 kb on - strand, within DZA65_RS01465 at 325.613 kb on - strand, within DZA65_RS01465 at 325.618 kb on - strand, within DZA65_RS01465 at 325.618 kb on - strand, within DZA65_RS01465 at 325.618 kb on - strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand at 325.644 kb on + strand, within DZA65_RS01465 at 325.644 kb on + strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.645 kb on - strand, within DZA65_RS01465 at 325.782 kb on + strand at 325.782 kb on + strand at 325.782 kb on + strand at 325.782 kb on + strand at 325.782 kb on + strand at 325.782 kb on + strand at 325.783 kb on - strand at 325.783 kb on - strand at 325.783 kb on - strand at 325.783 kb on - strand at 325.783 kb on - strand at 325.783 kb on - strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.785 kb on + strand at 325.786 kb on - strand at 325.786 kb on - strand at 325.786 kb on - strand at 325.786 kb on - strand at 325.786 kb on - strand at 325.786 kb on - strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.789 kb on + strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.790 kb on - strand at 325.793 kb on + strand at 325.793 kb on + strand at 325.794 kb on - strand at 325.887 kb on + strand at 325.887 kb on + strand at 325.887 kb on + strand at 325.888 kb on - strand at 325.901 kb on - strand at 325.918 kb on + strand at 325.918 kb on + strand at 325.918 kb on + strand at 325.918 kb on + strand at 325.918 kb on + strand at 325.918 kb on + strand at 325.918 kb on + strand at 325.918 kb on + strand at 325.919 kb on - strand at 325.919 kb on - strand at 325.919 kb on - strand at 325.919 kb on - strand at 325.919 kb on - strand at 325.999 kb on + strand, within DZA65_RS01470 at 325.999 kb on + strand, within DZA65_RS01470 at 326.000 kb on - strand, within DZA65_RS01470 at 326.000 kb on - strand, within DZA65_RS01470 at 326.000 kb on - strand, within DZA65_RS01470 at 326.143 kb on - strand, within DZA65_RS01470 at 326.261 kb on + strand, within DZA65_RS01470 at 326.261 kb on + strand, within DZA65_RS01470 at 326.261 kb on + strand, within DZA65_RS01470 at 326.262 kb on - strand, within DZA65_RS01470 at 326.262 kb on - strand, within DZA65_RS01470 at 326.262 kb on - strand, within DZA65_RS01470 at 326.275 kb on + strand, within DZA65_RS01470 at 326.275 kb on + strand, within DZA65_RS01470 at 326.275 kb on + strand, within DZA65_RS01470 at 326.276 kb on - strand, within DZA65_RS01470 at 326.420 kb on + strand, within DZA65_RS01470 at 326.420 kb on + strand, within DZA65_RS01470 at 326.421 kb on - strand, within DZA65_RS01470 at 326.421 kb on - strand, within DZA65_RS01470 at 326.421 kb on - strand, within DZA65_RS01470 at 326.421 kb on - strand, within DZA65_RS01470 at 326.506 kb on + strand at 326.506 kb on + strand at 326.507 kb on - strand at 326.543 kb on + strand at 326.543 kb on + strand at 326.543 kb on + strand at 326.543 kb on + strand at 326.543 kb on + strand at 326.543 kb on + strand at 326.544 kb on - strand at 326.544 kb on - strand at 326.544 kb on - strand at 326.544 kb on - strand at 326.544 kb on - strand at 326.544 kb on - strand at 326.544 kb on - strand at 326.557 kb on + strand at 326.573 kb on + strand at 326.573 kb on + strand at 326.576 kb on + strand at 326.599 kb on + strand at 326.604 kb on - strand at 326.705 kb on + strand, within DZA65_RS01475 at 327.052 kb on + strand, within DZA65_RS01475 at 327.052 kb on + strand, within DZA65_RS01475 at 327.052 kb on + strand, within DZA65_RS01475 at 327.138 kb on - strand at 327.196 kb on + strand at 327.197 kb on - strand at 327.197 kb on - strand at 327.197 kb on - strand at 327.213 kb on + strand at 327.213 kb on + strand at 327.213 kb on + strand at 327.213 kb on + strand at 327.213 kb on + strand at 327.214 kb on - strand at 327.214 kb on - strand at 327.214 kb on - strand at 327.214 kb on - strand at 327.214 kb on - strand at 327.224 kb on - strand at 327.234 kb on + strand at 327.234 kb on + strand at 327.234 kb on + strand at 327.235 kb on - strand at 327.246 kb on + strand at 327.246 kb on + strand at 327.246 kb on + strand at 327.247 kb on - strand at 327.247 kb on - strand at 327.279 kb on + strand at 327.280 kb on - strand at 327.295 kb on + strand at 327.296 kb on - strand at 327.296 kb on - strand at 327.302 kb on + strand at 327.366 kb on + strand at 327.512 kb on + strand, within DZA65_RS01480 at 327.513 kb on - strand, within DZA65_RS01480 at 327.515 kb on + strand, within DZA65_RS01480 at 327.515 kb on + strand, within DZA65_RS01480 at 327.515 kb on + strand, within DZA65_RS01480 at 327.515 kb on + strand, within DZA65_RS01480
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 324,959 + DZA65_RS01460 0.83 +0.5 324,959 + DZA65_RS01460 0.83 -2.1 324,959 + DZA65_RS01460 0.83 -0.7 324,959 + DZA65_RS01460 0.83 -2.3 324,960 - DZA65_RS01460 0.83 +0.5 325,066 - DZA65_RS01460 0.88 -0.4 325,187 + -0.5 325,270 + -0.7 325,270 + +1.0 325,270 + +0.2 325,270 + -1.7 325,270 + -2.8 325,270 + -0.0 325,271 - -1.0 325,271 - -2.7 325,271 - -1.0 325,289 + -0.9 325,306 - -0.5 325,445 + DZA65_RS01465 0.28 +0.5 325,445 + DZA65_RS01465 0.28 +0.9 325,445 + DZA65_RS01465 0.28 +0.6 325,446 - DZA65_RS01465 0.28 +0.9 325,446 - -0.5 325,446 - DZA65_RS01465 0.28 +1.2 325,446 - DZA65_RS01465 0.28 +1.2 325,446 - DZA65_RS01465 0.28 +1.0 325,480 + DZA65_RS01465 0.35 -1.3 325,480 + DZA65_RS01465 0.35 -2.0 325,481 - DZA65_RS01465 0.35 -0.1 325,481 - DZA65_RS01465 0.35 -0.5 325,509 - DZA65_RS01465 0.41 -1.3 325,612 + DZA65_RS01465 0.61 +0.7 325,612 + DZA65_RS01465 0.61 -0.4 325,612 + DZA65_RS01465 0.61 -2.7 325,613 - DZA65_RS01465 0.62 -0.1 325,613 - DZA65_RS01465 0.62 +0.8 325,618 - DZA65_RS01465 0.63 -2.0 325,618 - DZA65_RS01465 0.63 -1.5 325,618 - DZA65_RS01465 0.63 -1.1 325,644 + DZA65_RS01465 0.68 +0.8 325,644 + DZA65_RS01465 0.68 +0.1 325,644 + DZA65_RS01465 0.68 -0.9 325,644 + DZA65_RS01465 0.68 -0.1 325,644 + DZA65_RS01465 0.68 +0.3 325,644 + DZA65_RS01465 0.68 +2.1 325,644 + DZA65_RS01465 0.68 +0.8 325,644 + DZA65_RS01465 0.68 +0.7 325,644 + DZA65_RS01465 0.68 +0.7 325,644 + DZA65_RS01465 0.68 -0.8 325,644 + +0.5 325,644 + DZA65_RS01465 0.68 +1.0 325,644 + DZA65_RS01465 0.68 -0.3 325,645 - DZA65_RS01465 0.68 -1.0 325,645 - DZA65_RS01465 0.68 -0.8 325,645 - DZA65_RS01465 0.68 -0.3 325,645 - DZA65_RS01465 0.68 -2.1 325,645 - DZA65_RS01465 0.68 -0.8 325,645 - DZA65_RS01465 0.68 +1.0 325,645 - DZA65_RS01465 0.68 -0.5 325,645 - DZA65_RS01465 0.68 -0.5 325,645 - DZA65_RS01465 0.68 -0.1 325,645 - DZA65_RS01465 0.68 +1.6 325,645 - DZA65_RS01465 0.68 +1.5 325,645 - DZA65_RS01465 0.68 -1.7 325,645 - DZA65_RS01465 0.68 +0.3 325,645 - DZA65_RS01465 0.68 +1.6 325,645 - DZA65_RS01465 0.68 -1.1 325,645 - DZA65_RS01465 0.68 -0.0 325,645 - DZA65_RS01465 0.68 -0.8 325,782 + +1.5 325,782 + +0.3 325,782 + -0.1 325,782 + -0.5 325,782 + -0.6 325,782 + -1.1 325,783 - -2.0 325,783 - -1.2 325,783 - -0.2 325,783 - +0.4 325,783 - -0.7 325,783 - +1.4 325,785 + +0.5 325,785 + -1.9 325,785 + -1.0 325,785 + -1.0 325,785 + +1.8 325,785 + +0.8 325,785 + -1.7 325,785 + -0.1 325,785 + -2.1 325,785 + +0.2 325,785 + +0.1 325,786 - -1.8 325,786 - -0.1 325,786 - -0.8 325,786 - +0.2 325,786 - -0.4 325,786 - -1.1 325,789 + +0.9 325,789 + +1.2 325,789 + -0.7 325,789 + -1.1 325,789 + -1.9 325,789 + -0.8 325,789 + -0.3 325,789 + -0.8 325,789 + -2.8 325,789 + -1.3 325,789 + +1.9 325,789 + +1.1 325,789 + -2.0 325,789 + -0.9 325,789 + -1.7 325,789 + +0.2 325,789 + -0.3 325,790 - -1.0 325,790 - +1.5 325,790 - -0.8 325,790 - +1.1 325,790 - +1.5 325,790 - -1.7 325,790 - -0.8 325,790 - +0.3 325,790 - -1.3 325,790 - +0.9 325,790 - -0.5 325,790 - +0.2 325,790 - +0.1 325,790 - -0.1 325,790 - -0.1 325,790 - +2.1 325,790 - -0.0 325,793 + +1.9 325,793 + +0.2 325,794 - +0.5 325,887 + -1.1 325,887 + -0.2 325,887 + -0.5 325,888 - +1.5 325,901 - -0.8 325,918 + -2.1 325,918 + -1.2 325,918 + +0.0 325,918 + -0.3 325,918 + +2.5 325,918 + -0.8 325,918 + +0.2 325,918 + +1.0 325,919 - -0.1 325,919 - -1.7 325,919 - +0.4 325,919 - -1.1 325,919 - +0.3 325,999 + DZA65_RS01470 0.13 -0.1 325,999 + DZA65_RS01470 0.13 +0.5 326,000 - DZA65_RS01470 0.13 +2.1 326,000 - DZA65_RS01470 0.13 +0.4 326,000 - DZA65_RS01470 0.13 -0.8 326,143 - DZA65_RS01470 0.36 -1.3 326,261 + DZA65_RS01470 0.55 -1.5 326,261 + DZA65_RS01470 0.55 -1.8 326,261 + DZA65_RS01470 0.55 -0.5 326,262 - DZA65_RS01470 0.55 +0.3 326,262 - DZA65_RS01470 0.55 +1.0 326,262 - DZA65_RS01470 0.55 +0.3 326,275 + DZA65_RS01470 0.57 +0.7 326,275 + DZA65_RS01470 0.57 -1.3 326,275 + DZA65_RS01470 0.57 +0.7 326,276 - DZA65_RS01470 0.57 -1.5 326,420 + DZA65_RS01470 0.80 -0.2 326,420 + DZA65_RS01470 0.80 +1.3 326,421 - DZA65_RS01470 0.80 +1.1 326,421 - DZA65_RS01470 0.80 -0.4 326,421 - DZA65_RS01470 0.80 -0.4 326,421 - DZA65_RS01470 0.80 -0.7 326,506 + -2.3 326,506 + +1.2 326,507 - -0.1 326,543 + -0.1 326,543 + +0.3 326,543 + -0.5 326,543 + -0.1 326,543 + -0.8 326,543 + +0.2 326,544 - -0.9 326,544 - +0.8 326,544 - -0.1 326,544 - -0.1 326,544 - -0.7 326,544 - -0.3 326,544 - +1.5 326,557 + -0.7 326,573 + +0.1 326,573 + +0.5 326,576 + -0.3 326,599 + -1.7 326,604 - -0.8 326,705 + DZA65_RS01475 0.24 -0.5 327,052 + DZA65_RS01475 0.87 -0.7 327,052 + DZA65_RS01475 0.87 -1.3 327,052 + DZA65_RS01475 0.87 -0.1 327,138 - -0.3 327,196 + -0.6 327,197 - -0.8 327,197 - +0.8 327,197 - +0.9 327,213 + +0.6 327,213 + +0.1 327,213 + -0.8 327,213 + -0.6 327,213 + +1.1 327,214 - +0.6 327,214 - -0.2 327,214 - +0.8 327,214 - -1.1 327,214 - -0.5 327,224 - -0.6 327,234 + -0.3 327,234 + -1.7 327,234 + +0.5 327,235 - -0.7 327,246 + -0.6 327,246 + -2.0 327,246 + -1.6 327,247 - -1.5 327,247 - -0.1 327,279 + -1.1 327,280 - -0.4 327,295 + +0.9 327,296 - +1.5 327,296 - +1.4 327,302 + -0.8 327,366 + -0.6 327,512 + DZA65_RS01480 0.15 +0.9 327,513 - DZA65_RS01480 0.15 -0.7 327,515 + DZA65_RS01480 0.15 +2.5 327,515 + DZA65_RS01480 0.15 -0.4 327,515 + DZA65_RS01480 0.15 -1.4 327,515 + DZA65_RS01480 0.15 -1.1
Or see this region's nucleotide sequence