Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20790

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
4,483,226	+		DZA65_RS20780	0.26	-0.1
4,483,227	-		DZA65_RS20780	0.26	-0.7
4,483,237	-		DZA65_RS20780	0.28	-0.5
4,483,309	+		DZA65_RS20780	0.41	+0.1
4,483,309	+		DZA65_RS20780	0.41	-1.9
4,483,309	+		DZA65_RS20780	0.41	-0.5
4,483,309	+		DZA65_RS20780	0.41	+1.4
4,483,310	-		DZA65_RS20780	0.41	-0.4
4,483,310	-		DZA65_RS20780	0.41	-1.2
4,483,310	-		DZA65_RS20780	0.41	+1.1
4,483,536	+		DZA65_RS20780	0.82	+1.0
4,483,573	+		DZA65_RS20780	0.89	+0.4
4,483,574	-		DZA65_RS20780	0.89	-0.9
4,483,574	-		DZA65_RS20780	0.89	+0.3
4,483,585	+				-1.2
4,483,612	+				-1.7
4,483,619	+				+1.7
4,483,670	-				-0.4
4,483,670	-				-1.8
4,483,697	+		DZA65_RS20785	0.12	+0.5
4,483,697	+		DZA65_RS20785	0.12	-1.1
4,483,697	+		DZA65_RS20785	0.12	+1.4
4,483,698	-		DZA65_RS20785	0.12	+1.1
4,483,698	-		DZA65_RS20785	0.12	-1.4
4,483,728	+		DZA65_RS20785	0.17	+0.4
4,483,728	+		DZA65_RS20785	0.17	-0.9
4,483,728	+		DZA65_RS20785	0.17	+0.2
4,483,728	+		DZA65_RS20785	0.17	+1.6
4,483,728	+		DZA65_RS20785	0.17	-0.0
4,483,729	-		DZA65_RS20785	0.17	+1.1
4,483,729	-		DZA65_RS20785	0.17	-0.2
4,483,729	-		DZA65_RS20785	0.17	-1.0
4,483,729	-		DZA65_RS20785	0.17	-0.8
4,483,729	-		DZA65_RS20785	0.17	+0.9
4,483,729	-		DZA65_RS20785	0.17	-0.1
4,483,729	-		DZA65_RS20785	0.17	-0.1
4,483,743	+		DZA65_RS20785	0.20	-2.7
4,483,743	+		DZA65_RS20785	0.20	-1.5
4,483,743	+		DZA65_RS20785	0.20	-1.2
4,483,743	+		DZA65_RS20785	0.20	-2.5
4,483,743	+		DZA65_RS20785	0.20	-0.5
4,483,744	-		DZA65_RS20785	0.20	-1.9
4,483,744	-		DZA65_RS20785	0.20	-2.7
4,483,744	-		DZA65_RS20785	0.20	+0.5
4,483,744	-		DZA65_RS20785	0.20	+0.2
4,483,744	-		DZA65_RS20785	0.20	-0.7
4,483,792	+		DZA65_RS20785	0.29	-1.0
4,484,002	+		DZA65_RS20785	0.66	+1.2
4,484,149	+				-0.4
4,484,149	+				+0.3
4,484,150	-				-1.0
4,484,150	-				+0.0
4,484,150	-				+0.7
4,484,151	+				-1.0
4,484,151	+				-2.1
4,484,151	+				+0.2
4,484,151	+				+1.3
4,484,151	+				+0.1
4,484,151	+				-0.5
4,484,151	+				+0.8
4,484,151	+				+1.5
4,484,152	-				+0.2
4,484,152	-				+0.5
4,484,152	-				-0.9
4,484,152	-				-0.5
4,484,326	+		DZA65_RS20790	0.16	-0.1
4,484,326	+		DZA65_RS20790	0.16	-0.7
4,484,326	+				-0.5
4,484,326	+		DZA65_RS20790	0.16	-0.5
4,484,326	+		DZA65_RS20790	0.16	-1.5
4,484,326	+		DZA65_RS20790	0.16	-1.7
4,484,326	+		DZA65_RS20790	0.16	-1.5
4,484,326	+		DZA65_RS20790	0.16	-0.2
4,484,326	+		DZA65_RS20790	0.16	-0.5
4,484,326	+		DZA65_RS20790	0.16	-0.5
4,484,326	+		DZA65_RS20790	0.16	-1.1
4,484,326	+		DZA65_RS20790	0.16	-0.2
4,484,326	+		DZA65_RS20790	0.16	-0.5
4,484,326	+		DZA65_RS20790	0.16	-2.7
4,484,326	+		DZA65_RS20790	0.16	+0.1
4,484,326	+		DZA65_RS20790	0.16	+1.3
4,484,326	+		DZA65_RS20790	0.16	-1.0
4,484,327	-		DZA65_RS20790	0.16	+0.1
4,484,327	-		DZA65_RS20790	0.16	-1.2
4,484,327	-		DZA65_RS20790	0.16	+2.3
4,484,327	-		DZA65_RS20790	0.16	-1.7
4,484,327	-		DZA65_RS20790	0.16	-1.7
4,484,327	-		DZA65_RS20790	0.16	-1.1
4,484,327	-		DZA65_RS20790	0.16	-0.9
4,484,327	-		DZA65_RS20790	0.16	-0.2
4,484,327	-		DZA65_RS20790	0.16	+0.5
4,484,327	-		DZA65_RS20790	0.16	+1.5
4,484,327	-		DZA65_RS20790	0.16	-1.7
4,484,328	+		DZA65_RS20790	0.16	-1.2
4,484,328	+		DZA65_RS20790	0.16	+0.9
4,484,328	+		DZA65_RS20790	0.16	+0.5
4,484,328	+		DZA65_RS20790	0.16	-0.2
4,484,328	+		DZA65_RS20790	0.16	-2.4
4,484,329	-		DZA65_RS20790	0.16	+1.4
4,484,329	-		DZA65_RS20790	0.16	+1.5
4,484,329	-		DZA65_RS20790	0.16	+0.7
4,484,329	-		DZA65_RS20790	0.16	+1.9
4,484,353	-		DZA65_RS20790	0.19	+0.8
4,484,371	+		DZA65_RS20790	0.21	+0.1
4,484,371	+		DZA65_RS20790	0.21	-0.6
4,484,372	-		DZA65_RS20790	0.21	-2.1
4,484,394	+		DZA65_RS20790	0.23	+0.2
4,484,395	-				-1.7
4,484,395	-		DZA65_RS20790	0.23	+0.0
4,484,395	-		DZA65_RS20790	0.23	-0.9
4,484,395	-		DZA65_RS20790	0.23	+1.1
4,484,395	-		DZA65_RS20790	0.23	+1.3
4,484,402	+		DZA65_RS20790	0.24	+0.3
4,484,402	+		DZA65_RS20790	0.24	+0.1
4,484,403	-		DZA65_RS20790	0.24	-0.5
4,484,403	-		DZA65_RS20790	0.24	-1.9
4,484,447	-		DZA65_RS20790	0.29	+0.5
4,484,459	-		DZA65_RS20790	0.31	-0.9
4,484,599	+		DZA65_RS20790	0.46	-0.9
4,484,599	+		DZA65_RS20790	0.46	-1.5
4,484,599	+		DZA65_RS20790	0.46	+1.4
4,484,599	+		DZA65_RS20790	0.46	-1.7
4,484,599	+		DZA65_RS20790	0.46	-0.9
4,484,600	-		DZA65_RS20790	0.46	-0.9
4,484,600	-		DZA65_RS20790	0.46	-0.3
4,484,600	-		DZA65_RS20790	0.46	-1.5
4,484,600	-		DZA65_RS20790	0.46	-2.7
4,484,602	+		DZA65_RS20790	0.47	+0.1
4,484,602	+		DZA65_RS20790	0.47	+2.6
4,484,603	-		DZA65_RS20790	0.47	-1.1
4,484,603	-		DZA65_RS20790	0.47	+0.4
4,484,603	-		DZA65_RS20790	0.47	-0.5
4,484,646	-		DZA65_RS20790	0.51	-0.2
4,484,646	-		DZA65_RS20790	0.51	-0.1
4,484,646	-		DZA65_RS20790	0.51	-0.8
4,484,646	-		DZA65_RS20790	0.51	-0.6
4,484,692	+		DZA65_RS20790	0.57	-1.2
4,484,693	-		DZA65_RS20790	0.57	+0.5
4,484,776	+		DZA65_RS20790	0.66	-0.8
4,484,778	+		DZA65_RS20790	0.66	-2.1
4,484,778	+		DZA65_RS20790	0.66	-0.6
4,484,778	+		DZA65_RS20790	0.66	+0.2
4,484,778	+		DZA65_RS20790	0.66	+2.0
4,484,778	+		DZA65_RS20790	0.66	+0.1
4,484,778	+		DZA65_RS20790	0.66	-1.1
4,484,778	+		DZA65_RS20790	0.66	-2.1
4,484,778	+		DZA65_RS20790	0.66	-0.7
4,484,778	+		DZA65_RS20790	0.66	-0.1
4,484,778	+		DZA65_RS20790	0.66	+1.6
4,484,778	+		DZA65_RS20790	0.66	-1.2
4,484,779	-		DZA65_RS20790	0.66	-1.5
4,484,779	-		DZA65_RS20790	0.66	-0.1
4,484,779	-		DZA65_RS20790	0.66	-0.5
4,484,779	-		DZA65_RS20790	0.66	-0.2
4,484,779	-		DZA65_RS20790	0.66	-0.8
4,484,779	-		DZA65_RS20790	0.66	-1.5
4,484,779	-		DZA65_RS20790	0.66	-0.2
4,484,838	-		DZA65_RS20790	0.73	-2.2
4,484,838	-		DZA65_RS20790	0.73	+1.5
4,484,911	+		DZA65_RS20790	0.81	-1.5
4,484,911	+		DZA65_RS20790	0.81	+0.7
4,484,911	+		DZA65_RS20790	0.81	+0.7
4,484,912	-		DZA65_RS20790	0.81	-0.5
4,484,912	-		DZA65_RS20790	0.81	-1.7
4,484,912	-		DZA65_RS20790	0.81	+1.5
4,484,933	+		DZA65_RS20790	0.84	+0.3
4,484,933	+		DZA65_RS20790	0.84	-0.1
4,484,933	+		DZA65_RS20790	0.84	+0.2
4,484,933	+		DZA65_RS20790	0.84	-1.2
4,484,933	+		DZA65_RS20790	0.84	+0.5
4,484,933	+		DZA65_RS20790	0.84	-1.5
4,484,933	+		DZA65_RS20790	0.84	+1.8
4,484,933	+		DZA65_RS20790	0.84	-1.4
4,484,933	+		DZA65_RS20790	0.84	+0.3
4,484,933	+		DZA65_RS20790	0.84	-2.6
4,484,933	+		DZA65_RS20790	0.84	-0.8
4,484,934	-		DZA65_RS20790	0.84	+0.3
4,484,934	-		DZA65_RS20790	0.84	-0.2
4,484,934	-		DZA65_RS20790	0.84	-1.2
4,484,934	-		DZA65_RS20790	0.84	-2.5
4,484,934	-		DZA65_RS20790	0.84	-0.9
4,484,934	-				-1.9
4,484,934	-		DZA65_RS20790	0.84	-0.3
4,484,939	-		DZA65_RS20790	0.84	+0.2
4,484,939	-		DZA65_RS20790	0.84	-0.7
4,484,948	+		DZA65_RS20790	0.85	-0.4
4,485,014	+				+1.1
4,485,015	-				+1.4
4,485,031	+				-1.8
4,485,032	-				-1.5
4,485,032	-				-1.5
4,485,072	+				+1.1
4,485,096	+				+0.1
4,485,106	+				+1.1
4,485,106	+				-0.9
4,485,106	+				+0.1
4,485,106	+				-1.1
4,485,107	-				-0.7
4,485,124	+				+0.4
4,485,124	+				-0.2
4,485,124	+				+0.5
4,485,125	-				+0.1
4,485,125	-				+0.5
4,485,125	-				+0.9
4,485,126	+				-1.7
4,485,126	+				+0.1
4,485,126	+				-0.0
4,485,126	+				+0.4
4,485,126	+				+0.7
4,485,126	+				+1.1
4,485,126	+				+0.1
4,485,126	+				-2.5
4,485,126	+				-0.3
4,485,126	+				-0.7
4,485,127	-				-1.5
4,485,127	-				-0.2
4,485,127	-				+2.6
4,485,127	-				-0.5
4,485,127	-				+1.1
4,485,127	-				-0.2
4,485,127	-				-0.9
4,485,146	+				-1.9
4,485,146	+				-0.2
4,485,146	+				-0.5
4,485,146	+				-0.5
4,485,151	+				-0.9
4,485,151	+				-0.2
4,485,151	+				+1.2
4,485,152	-				-1.7
4,485,152	-				+0.5
4,485,152	-				+1.3
4,485,192	+				+1.8
4,485,193	-				+0.6
4,485,197	+				-0.9
4,485,197	+				-0.3
4,485,197	+				-0.7
4,485,197	+				-1.2
4,485,197	+				-0.5
4,485,197	+				-0.7
4,485,197	+				-0.2
4,485,198	-				+0.7
4,485,201	+				+0.2
4,485,201	+				-1.5
4,485,201	+				+0.1
4,485,201	+				+0.2
4,485,201	+				+0.2
4,485,201	+				-1.2
4,485,201	+				-0.9
4,485,201	+				-0.5
4,485,201	+				+1.8
4,485,201	+				-2.5
4,485,202	-				-0.5
4,485,202	-				+0.4
4,485,202	-				-2.0
4,485,202	-				+0.6
4,485,202	-				+1.1
4,485,202	-				-2.8
4,485,202	-				-1.7
4,485,202	-				-1.2
4,485,202	-				-1.1
4,485,257	+				-2.9
4,485,263	+				-0.2
4,485,263	+				-0.9
4,485,264	-				+2.5
4,485,264	-				+0.5
4,485,264	-				-1.1
4,485,266	-				-1.4
4,485,599	-		DZA65_RS20795	0.16	-1.9
4,485,668	+		DZA65_RS20795	0.19	+0.1
4,485,669	-		DZA65_RS20795	0.19	-0.9
4,485,669	-		DZA65_RS20795	0.19	-0.1
4,485,669	-		DZA65_RS20795	0.19	+0.5
4,485,683	+		DZA65_RS20795	0.20	-1.6
4,485,683	+		DZA65_RS20795	0.20	+1.3
4,485,684	-		DZA65_RS20795	0.20	-1.5
4,485,684	-		DZA65_RS20795	0.20	-3.4
4,485,728	+		DZA65_RS20795	0.21	-2.4
4,485,728	+				-1.9
4,485,729	-		DZA65_RS20795	0.21	-0.1
4,485,818	+		DZA65_RS20795	0.25	-1.9
4,485,818	+		DZA65_RS20795	0.25	+0.1
4,485,824	+		DZA65_RS20795	0.25	+0.2
4,485,825	-		DZA65_RS20795	0.25	-1.2
4,485,881	+		DZA65_RS20795	0.27	+0.2
4,485,882	-		DZA65_RS20795	0.27	+0.1
4,485,886	+		DZA65_RS20795	0.28	-1.4
4,485,887	-		DZA65_RS20795	0.28	-0.7
4,485,899	+		DZA65_RS20795	0.28	-1.5
4,485,900	-		DZA65_RS20795	0.28	-0.9
4,485,935	+		DZA65_RS20795	0.29	+1.7
4,485,968	+		DZA65_RS20795	0.31	-1.5
4,485,968	+		DZA65_RS20795	0.31	+0.5
4,485,968	+		DZA65_RS20795	0.31	-0.4
4,485,968	+		DZA65_RS20795	0.31	+0.3
4,485,968	+		DZA65_RS20795	0.31	-0.5
4,485,968	+		DZA65_RS20795	0.31	-0.1
4,485,968	+		DZA65_RS20795	0.31	-1.6
4,485,968	+		DZA65_RS20795	0.31	-1.7
4,485,969	-				-1.2
4,485,969	-				-1.1
4,485,969	-		DZA65_RS20795	0.31	+0.3
4,485,969	-		DZA65_RS20795	0.31	-0.2
4,485,969	-		DZA65_RS20795	0.31	-1.5
4,485,969	-		DZA65_RS20795	0.31	-1.6
4,485,969	-		DZA65_RS20795	0.31	-0.2
4,485,969	-		DZA65_RS20795	0.31	-1.5
4,486,022	+		DZA65_RS20795	0.33	-1.5
4,486,022	+		DZA65_RS20795	0.33	-1.5
4,486,022	+		DZA65_RS20795	0.33	-1.7
4,486,022	+		DZA65_RS20795	0.33	-2.1
4,486,023	-		DZA65_RS20795	0.33	-1.7
4,486,023	-		DZA65_RS20795	0.33	-1.4
4,486,023	-		DZA65_RS20795	0.33	-1.5
4,486,025	-		DZA65_RS20795	0.33	-1.2
4,486,025	-		DZA65_RS20795	0.33	-0.9
4,486,043	+		DZA65_RS20795	0.34	+2.0