Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20100

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
4,354,439	-		DZA65_RS20090	0.68	-1.4
4,354,439	-		DZA65_RS20090	0.68	+0.9
4,354,439	-		DZA65_RS20090	0.68	-1.9
4,354,474	+		DZA65_RS20090	0.72	-0.6
4,354,475	-		DZA65_RS20090	0.72	+0.1
4,354,475	-		DZA65_RS20090	0.72	+1.5
4,354,507	-		DZA65_RS20090	0.75	+1.1
4,354,507	-		DZA65_RS20090	0.75	+1.1
4,354,520	+		DZA65_RS20090	0.77	-2.1
4,354,520	+		DZA65_RS20090	0.77	-2.2
4,354,520	+		DZA65_RS20090	0.77	-1.3
4,354,520	+		DZA65_RS20090	0.77	-0.9
4,354,556	+		DZA65_RS20090	0.81	-2.2
4,354,556	+		DZA65_RS20090	0.81	+1.1
4,354,556	+		DZA65_RS20090	0.81	+1.4
4,354,556	+		DZA65_RS20090	0.81	-1.9
4,354,556	+		DZA65_RS20090	0.81	+0.7
4,354,557	-		DZA65_RS20090	0.81	+0.2
4,354,557	-		DZA65_RS20090	0.81	-1.2
4,354,557	-		DZA65_RS20090	0.81	-1.2
4,354,557	-		DZA65_RS20090	0.81	+1.1
4,354,557	-		DZA65_RS20090	0.81	-2.7
4,354,557	-		DZA65_RS20090	0.81	+0.4
4,354,557	-		DZA65_RS20090	0.81	-0.9
4,354,557	-		DZA65_RS20090	0.81	-2.0
4,354,639	+		DZA65_RS20090	0.90	+0.2
4,354,640	-		DZA65_RS20090	0.90	+1.0
4,354,640	-		DZA65_RS20090	0.90	-1.8
4,354,640	-		DZA65_RS20090	0.90	-0.8
4,354,640	-		DZA65_RS20090	0.90	-1.2
4,354,640	-		DZA65_RS20090	0.90	+0.3
4,354,672	-				+0.1
4,354,677	+				-0.8
4,354,690	+				-0.1
4,354,691	-				+0.6
4,354,691	-				-0.5
4,354,691	-				-1.0
4,354,691	-				-2.0
4,354,691	-				+2.1
4,354,691	-				-2.1
4,354,727	+				-1.3
4,354,727	+				-0.5
4,354,728	-				+0.5
4,354,728	-				+0.4
4,354,734	+				-0.5
4,354,734	+				-1.7
4,354,734	+				-1.2
4,354,734	+				-1.5
4,354,768	-				-0.5
4,354,768	-				-0.3
4,354,768	-				+0.3
4,354,820	-		DZA65_RS20095	0.13	+1.1
4,354,919	-		DZA65_RS20095	0.28	+2.4
4,354,943	+		DZA65_RS20095	0.31	+0.1
4,354,943	+		DZA65_RS20095	0.31	-0.3
4,354,943	+		DZA65_RS20095	0.31	-2.1
4,354,961	+		DZA65_RS20095	0.34	-0.5
4,354,961	+		DZA65_RS20095	0.34	+0.1
4,354,961	+		DZA65_RS20095	0.34	+0.4
4,354,962	-		DZA65_RS20095	0.34	-0.2
4,354,962	-		DZA65_RS20095	0.34	+1.4
4,354,963	+		DZA65_RS20095	0.34	-0.2
4,354,963	+		DZA65_RS20095	0.34	-0.5
4,354,963	+		DZA65_RS20095	0.34	-1.4
4,354,963	+		DZA65_RS20095	0.34	-0.7
4,354,964	-		DZA65_RS20095	0.34	-1.5
4,354,964	-		DZA65_RS20095	0.34	-1.5
4,354,964	-		DZA65_RS20095	0.34	-1.2
4,354,964	-		DZA65_RS20095	0.34	-1.9
4,355,196	+		DZA65_RS20095	0.69	+1.1
4,355,197	-		DZA65_RS20095	0.69	+0.5
4,355,197	-		DZA65_RS20095	0.69	-0.9
4,355,224	+		DZA65_RS20095	0.73	+0.8
4,355,243	-		DZA65_RS20095	0.76	-1.1
4,355,243	-		DZA65_RS20095	0.76	+0.3
4,355,248	+		DZA65_RS20095	0.76	-0.3
4,355,249	-		DZA65_RS20095	0.76	-1.1
4,355,374	-				+1.7
4,355,377	+				+1.1
4,355,378	-				-1.3
4,355,388	+				+0.1
4,355,389	-				-0.4
4,355,389	-				+0.1
4,355,442	+				-1.0
4,355,442	+				-1.0
4,355,442	+				+2.1
4,355,443	-				-0.9
4,355,443	-				+0.3
4,355,443	-				-1.1
4,355,453	+				+1.1
4,355,453	+				-0.4
4,355,454	-				+0.1
4,355,454	-				-1.5
4,355,524	+		DZA65_RS20100	0.12	-0.9
4,355,524	+		DZA65_RS20100	0.12	+1.6
4,355,524	+		DZA65_RS20100	0.12	-0.7
4,355,524	+		DZA65_RS20100	0.12	-1.2
4,355,524	+		DZA65_RS20100	0.12	-0.1
4,355,524	+		DZA65_RS20100	0.12	-1.2
4,355,524	+				+0.8
4,355,524	+		DZA65_RS20100	0.12	-0.6
4,355,525	-		DZA65_RS20100	0.12	-0.5
4,355,525	-		DZA65_RS20100	0.12	-1.7
4,355,525	-		DZA65_RS20100	0.12	-0.5
4,355,525	-		DZA65_RS20100	0.12	-1.7
4,355,525	-		DZA65_RS20100	0.12	+1.8
4,355,525	-		DZA65_RS20100	0.12	-1.7
4,355,525	-		DZA65_RS20100	0.12	-1.5
4,355,525	-		DZA65_RS20100	0.12	+0.1
4,355,525	-		DZA65_RS20100	0.12	-2.4
4,355,528	+		DZA65_RS20100	0.12	-0.8
4,355,528	+		DZA65_RS20100	0.12	-0.3
4,355,528	+		DZA65_RS20100	0.12	+0.2
4,355,528	+		DZA65_RS20100	0.12	+0.4
4,355,528	+		DZA65_RS20100	0.12	+2.8
4,355,529	-		DZA65_RS20100	0.12	+1.1
4,355,529	-		DZA65_RS20100	0.12	+0.1
4,355,529	-		DZA65_RS20100	0.12	-0.9
4,355,529	-		DZA65_RS20100	0.12	+0.3
4,355,529	-		DZA65_RS20100	0.12	-2.1
4,355,529	-		DZA65_RS20100	0.12	+0.1
4,355,551	+		DZA65_RS20100	0.15	+0.6
4,355,551	+		DZA65_RS20100	0.15	+1.1
4,355,551	+		DZA65_RS20100	0.15	+0.5
4,355,552	-		DZA65_RS20100	0.15	+0.4
4,355,578	+		DZA65_RS20100	0.18	-1.9
4,355,578	+		DZA65_RS20100	0.18	+0.5
4,355,578	+		DZA65_RS20100	0.18	-1.5
4,355,579	-		DZA65_RS20100	0.18	+2.1
4,355,579	-		DZA65_RS20100	0.18	-1.7
4,355,582	+		DZA65_RS20100	0.18	+0.8
4,355,602	+		DZA65_RS20100	0.20	+0.8
4,355,603	-		DZA65_RS20100	0.20	+1.8
4,355,603	-		DZA65_RS20100	0.20	-2.8
4,355,650	+		DZA65_RS20100	0.25	-1.6
4,355,650	+		DZA65_RS20100	0.25	-0.0
4,355,749	-		DZA65_RS20100	0.35	+0.4
4,355,754	+		DZA65_RS20100	0.36	+0.4
4,355,754	+		DZA65_RS20100	0.36	+1.1
4,355,755	-		DZA65_RS20100	0.36	-0.2
4,355,755	-		DZA65_RS20100	0.36	+1.2
4,355,764	+		DZA65_RS20100	0.37	-0.5
4,355,814	-		DZA65_RS20100	0.42	-1.0
4,355,814	-		DZA65_RS20100	0.42	+1.1
4,355,814	-		DZA65_RS20100	0.42	+0.3
4,355,830	+		DZA65_RS20100	0.44	-0.3
4,355,830	+		DZA65_RS20100	0.44	+1.9
4,355,831	-		DZA65_RS20100	0.44	+0.4
4,355,831	-		DZA65_RS20100	0.44	-2.6
4,355,831	-		DZA65_RS20100	0.44	+1.5
4,355,854	+		DZA65_RS20100	0.46	-0.5
4,355,854	+		DZA65_RS20100	0.46	-2.2
4,355,854	+		DZA65_RS20100	0.46	+0.3
4,355,854	+		DZA65_RS20100	0.46	+1.1
4,355,855	-		DZA65_RS20100	0.46	-0.2
4,355,855	-		DZA65_RS20100	0.46	-0.9
4,355,855	-		DZA65_RS20100	0.46	-0.9
4,355,883	-		DZA65_RS20100	0.49	-1.4
4,355,883	-		DZA65_RS20100	0.49	-2.6
4,355,919	-		DZA65_RS20100	0.53	-0.2
4,355,919	-		DZA65_RS20100	0.53	-0.7
4,355,919	-		DZA65_RS20100	0.53	-0.6
4,355,919	-		DZA65_RS20100	0.53	+0.7
4,355,979	+		DZA65_RS20100	0.59	+0.5
4,355,980	-		DZA65_RS20100	0.59	+0.7
4,356,123	-		DZA65_RS20100	0.74	+0.4
4,356,131	+		DZA65_RS20100	0.75	+0.8
4,356,176	-		DZA65_RS20100	0.80	+0.1
4,356,176	-		DZA65_RS20100	0.80	+2.3
4,356,176	-		DZA65_RS20100	0.80	+1.4
4,356,179	+		DZA65_RS20100	0.80	+1.0
4,356,188	+		DZA65_RS20100	0.81	+1.2
4,356,258	-		DZA65_RS20100	0.88	+0.7
4,356,289	+				-1.9
4,356,306	+				-1.1
4,356,308	+				+0.5
4,356,309	-				-1.3
4,356,309	-				+0.1
4,356,309	-				-0.5
4,356,311	-				+0.4
4,356,311	-				-1.2
4,356,329	+				+1.7
4,356,329	+				-0.9
4,356,330	-				-1.5
4,356,334	-				-0.9
4,356,393	+				-0.5
4,356,414	-				-1.5
4,356,480	-		DZA65_RS20105	0.10	+0.4
4,356,492	+		DZA65_RS20105	0.15	-0.5
4,356,492	+		DZA65_RS20105	0.15	-2.3
4,356,492	+		DZA65_RS20105	0.15	+0.2
4,356,493	-		DZA65_RS20105	0.15	-1.9
4,356,493	-		DZA65_RS20105	0.15	+1.5
4,356,589	+		DZA65_RS20105	0.51	-1.1
4,356,614	+		DZA65_RS20105	0.61	+0.3
4,356,814	+				-1.5
4,356,814	+				+1.7
4,356,814	+				-0.7
4,356,814	+				-1.5
4,356,814	+				-1.2
4,356,814	+				+2.1
4,356,814	+				-2.2
4,356,814	+				-0.5
4,356,814	+				+0.8
4,356,815	-				+0.9
4,356,815	-				+1.1
4,356,816	+				-0.2
4,356,816	+				-1.7
4,356,816	+				-0.2
4,356,816	+				+0.6
4,356,816	+				+0.3
4,356,816	+				-0.3
4,356,817	-				+0.5
4,356,817	-				-2.2
4,356,817	-				+0.3
4,356,817	-				-0.5
4,356,817	-				+1.9
4,356,818	+				-0.5
4,356,860	+				-1.6
4,356,860	+				+0.2
4,356,860	+				-0.9
4,356,861	-				+0.6
4,356,920	+		DZA65_RS20110	0.13	-0.6
4,356,920	+		DZA65_RS20110	0.13	-1.9
4,356,920	+		DZA65_RS20110	0.13	+0.6
4,356,920	+		DZA65_RS20110	0.13	+0.1
4,356,920	+		DZA65_RS20110	0.13	+1.6
4,356,920	+		DZA65_RS20110	0.13	-0.9
4,356,920	+		DZA65_RS20110	0.13	+0.7
4,356,920	+		DZA65_RS20110	0.13	+0.3
4,356,920	+		DZA65_RS20110	0.13	-0.1
4,356,920	+		DZA65_RS20110	0.13	-0.3
4,356,920	+		DZA65_RS20110	0.13	+0.0
4,356,920	+		DZA65_RS20110	0.13	-0.9
4,356,920	+		DZA65_RS20110	0.13	-0.0
4,356,920	+		DZA65_RS20110	0.13	-0.9
4,356,920	+		DZA65_RS20110	0.13	-0.1
4,356,921	-				-1.9
4,356,921	-		DZA65_RS20110	0.13	-2.4
4,356,921	-		DZA65_RS20110	0.13	-1.7
4,356,921	-		DZA65_RS20110	0.13	-1.5
4,356,921	-		DZA65_RS20110	0.13	-0.8
4,356,921	-		DZA65_RS20110	0.13	+0.1
4,356,921	-		DZA65_RS20110	0.13	-1.6
4,356,921	-		DZA65_RS20110	0.13	+0.0
4,356,921	-		DZA65_RS20110	0.13	+1.8
4,356,921	-		DZA65_RS20110	0.13	-2.8
4,356,950	-		DZA65_RS20110	0.15	+0.1
4,357,047	+		DZA65_RS20110	0.21	+0.1
4,357,048	-		DZA65_RS20110	0.21	+3.7
4,357,051	+		DZA65_RS20110	0.21	-1.2
4,357,051	+		DZA65_RS20110	0.21	-1.1
4,357,051	+		DZA65_RS20110	0.21	+0.1
4,357,051	+		DZA65_RS20110	0.21	+0.9
4,357,052	-		DZA65_RS20110	0.21	-1.9
4,357,052	-		DZA65_RS20110	0.21	-3.1
4,357,052	-		DZA65_RS20110	0.21	-1.2
4,357,052	-		DZA65_RS20110	0.21	+0.6
4,357,052	-		DZA65_RS20110	0.21	+0.1
4,357,052	-		DZA65_RS20110	0.21	-0.1
4,357,052	-		DZA65_RS20110	0.21	-0.9
4,357,052	-		DZA65_RS20110	0.21	+0.0
4,357,052	-		DZA65_RS20110	0.21	+1.4
4,357,076	+		DZA65_RS20110	0.23	-1.2
4,357,076	+		DZA65_RS20110	0.23	+0.7
4,357,077	-		DZA65_RS20110	0.23	-1.8
4,357,077	-		DZA65_RS20110	0.23	+0.4
4,357,079	+		DZA65_RS20110	0.23	-1.1
4,357,096	-		DZA65_RS20110	0.24	-0.1
4,357,098	+		DZA65_RS20110	0.24	+2.2
4,357,133	-		DZA65_RS20110	0.27	-1.9
4,357,244	-		DZA65_RS20110	0.34	-0.9
4,357,252	-				+3.0
4,357,356	+		DZA65_RS20110	0.41	-0.9
4,357,356	+		DZA65_RS20110	0.41	+0.1
4,357,357	-		DZA65_RS20110	0.41	+0.1
4,357,357	-		DZA65_RS20110	0.41	+2.3
4,357,360	+		DZA65_RS20110	0.42	+1.1
4,357,360	+		DZA65_RS20110	0.42	-0.9
4,357,360	+		DZA65_RS20110	0.42	+1.7
4,357,361	-		DZA65_RS20110	0.42	-1.7
4,357,361	-		DZA65_RS20110	0.42	-1.7