Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19225

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
4,155,821	+				+0.3
4,155,822	-				-2.2
4,156,015	-		DZA65_RS19215	0.33	+0.5
4,156,029	-		DZA65_RS19215	0.35	-0.6
4,156,029	-		DZA65_RS19215	0.35	-0.2
4,156,272	-		DZA65_RS19215	0.76	-0.5
4,156,290	+				-2.4
4,156,290	+		DZA65_RS19215	0.79	-1.0
4,156,291	-		DZA65_RS19215	0.79	-1.2
4,156,291	-		DZA65_RS19215	0.79	-1.9
4,156,291	-		DZA65_RS19215	0.79	-0.5
4,156,291	-		DZA65_RS19215	0.79	+0.1
4,156,304	-		DZA65_RS19215	0.81	+0.1
4,156,304	-		DZA65_RS19215	0.81	+1.1
4,156,304	-		DZA65_RS19215	0.81	-0.4
4,156,417	-				+1.7
4,156,417	-				-0.8
4,156,417	-				+1.7
4,156,435	+				+0.4
4,156,435	+				-0.8
4,156,436	-				+1.1
4,156,436	-				+1.3
4,156,488	+				+0.1
4,156,488	+				-0.5
4,156,488	+				+0.5
4,156,488	+				-0.4
4,156,488	+				+0.2
4,156,488	+				+2.5
4,156,488	+				-1.7
4,156,488	+				+0.5
4,156,488	+				+0.5
4,156,488	+				-3.6
4,156,488	+				+1.8
4,156,488	+				-1.2
4,156,488	+				-1.4
4,156,489	-				-0.6
4,156,489	-				-1.1
4,156,489	-				-1.5
4,156,489	-				-0.3
4,156,489	-				-0.2
4,156,489	-				+1.5
4,156,489	-				-0.9
4,156,489	-				-1.5
4,156,489	-				-2.1
4,156,489	-				-0.4
4,156,489	-				+0.3
4,156,489	-				+0.1
4,156,489	-				-1.1
4,156,489	-				-2.8
4,156,489	-				-1.5
4,156,489	-				-0.6
4,156,489	-				-1.0
4,156,489	-				-0.3
4,156,742	+				-1.1
4,156,742	+				-1.7
4,156,742	+				-1.5
4,156,742	+				+1.6
4,156,743	-				-1.2
4,156,743	-				-1.1
4,156,743	-				+1.4
4,156,744	+				-1.2
4,156,744	+				+0.1
4,156,744	+				-1.5
4,156,744	+				-0.6
4,156,744	+				-1.2
4,156,744	+				+0.7
4,156,744	+				-1.4
4,156,744	+				-0.1
4,156,745	-				+1.3
4,156,745	-				-0.3
4,156,745	-				-2.6
4,156,745	-				-1.0
4,156,745	-				-1.4
4,156,774	+				+1.1
4,156,775	-				+1.1
4,156,775	-				-0.5
4,156,862	+				-1.2
4,156,863	-				+1.1
4,156,863	-				-1.2
4,156,863	-				-0.5
4,156,863	-				-1.8
4,156,863	-				-0.5
4,156,897	+				-1.2
4,157,028	+		DZA65_RS19225	0.23	-3.3
4,157,029	-		DZA65_RS19225	0.23	-1.6
4,157,029	-		DZA65_RS19225	0.23	-1.2
4,157,084	-		DZA65_RS19225	0.30	-0.6
4,157,084	-		DZA65_RS19225	0.30	-2.1
4,157,084	-		DZA65_RS19225	0.30	-0.9
4,157,143	+		DZA65_RS19225	0.36	-2.9
4,157,169	+		DZA65_RS19225	0.39	-1.8
4,157,169	+		DZA65_RS19225	0.39	-0.5
4,157,170	-		DZA65_RS19225	0.39	-0.5
4,157,187	+		DZA65_RS19225	0.41	-1.7
4,157,467	+				-1.2
4,157,467	+		DZA65_RS19225	0.72	-2.7
4,157,467	+		DZA65_RS19225	0.72	-0.8
4,157,467	+		DZA65_RS19225	0.72	-2.8
4,157,468	-		DZA65_RS19225	0.72	-1.7
4,157,468	-		DZA65_RS19225	0.72	-1.2
4,157,468	-		DZA65_RS19225	0.72	-0.1
4,157,516	+		DZA65_RS19225	0.78	-1.9
4,157,516	+		DZA65_RS19225	0.78	-1.5
4,157,516	+		DZA65_RS19225	0.78	-0.5
4,157,516	+		DZA65_RS19225	0.78	-0.1
4,157,516	+		DZA65_RS19225	0.78	-1.2
4,157,516	+		DZA65_RS19225	0.78	-1.4
4,157,517	-		DZA65_RS19225	0.78	-1.5
4,157,517	-		DZA65_RS19225	0.78	-0.9
4,157,517	-		DZA65_RS19225	0.78	-2.1
4,157,518	+		DZA65_RS19225	0.78	-3.3
4,157,518	+		DZA65_RS19225	0.78	-1.7
4,157,518	+		DZA65_RS19225	0.78	-0.1
4,157,518	+		DZA65_RS19225	0.78	-1.2
4,157,519	-		DZA65_RS19225	0.78	-1.1
4,157,519	-		DZA65_RS19225	0.78	-3.0
4,157,519	-		DZA65_RS19225	0.78	-2.7
4,157,634	+				+0.1
4,157,681	+				-0.3
4,157,681	+				-1.2
4,157,681	+				-1.2
4,157,681	+				-0.9
4,157,681	+				-0.9
4,157,681	+				-0.5
4,157,682	-				+0.1
4,157,682	-				-2.2
4,157,682	-				-1.5
4,157,682	-				-3.4
4,157,682	-				+1.4
4,157,682	-				-1.9
4,157,696	+				-0.5
4,157,696	+				-0.5
4,157,696	+				+0.6
4,157,696	+				+0.1
4,157,696	+				-1.5
4,157,696	+				-2.4
4,157,696	+				-0.9
4,157,696	+				-3.9
4,157,697	-				-2.2
4,157,697	-				+0.1
4,157,697	-				-0.9
4,157,698	+				-1.2
4,157,698	+				-1.2
4,157,698	+				-1.1
4,157,699	-				-1.5
4,157,699	-				-3.5
4,157,699	-				-1.9
4,157,699	-				-1.3
4,157,718	-				+0.6
4,157,718	-				-0.5
4,157,718	-				+0.7
4,157,728	+				-2.7
4,157,729	-				-0.4
4,157,729	-				-0.6
4,157,729	-				-0.6
4,157,811	-				+0.6
4,157,839	+				+0.8
4,157,869	+				+0.1
4,157,870	-				+0.0
4,157,955	+				+1.1
4,157,955	+				-0.1
4,157,956	-				+1.2
4,158,130	-				-0.7
4,158,130	-				+1.1
4,158,168	+				+0.9
4,158,224	+				+0.7
4,158,270	+				+0.5
4,158,270	+				-1.3
4,158,270	+				-2.1
4,158,270	+				-0.6
4,158,270	+				+1.5
4,158,270	+				+0.7
4,158,271	-				-0.9
4,158,271	-				-1.8
4,158,272	+				+1.4
4,158,303	+				+0.1
4,158,303	+				-0.5
4,158,303	+				-0.6
4,158,303	+				+0.9
4,158,303	+				+1.3
4,158,303	+				-1.7
4,158,303	+				-0.9
4,158,304	-				-1.7
4,158,304	-				-0.4
4,158,304	-				+1.1
4,158,304	-				+0.2
4,158,304	-				-1.2
4,158,304	-				+0.7
4,158,304	-				-0.7
4,158,402	+		DZA65_RS19235	0.16	+2.7
4,158,402	+		DZA65_RS19235	0.16	-0.5
4,158,402	+		DZA65_RS19235	0.16	-1.1
4,158,402	+		DZA65_RS19235	0.16	-0.5
4,158,402	+		DZA65_RS19235	0.16	-0.1
4,158,402	+		DZA65_RS19235	0.16	-1.5
4,158,402	+		DZA65_RS19235	0.16	-2.0
4,158,402	+		DZA65_RS19235	0.16	-0.1
4,158,402	+		DZA65_RS19235	0.16	+0.1
4,158,402	+		DZA65_RS19235	0.16	-1.5
4,158,402	+		DZA65_RS19235	0.16	+0.4
4,158,402	+		DZA65_RS19235	0.16	+2.5
4,158,402	+		DZA65_RS19235	0.16	+1.8
4,158,402	+		DZA65_RS19235	0.16	-0.3
4,158,403	-		DZA65_RS19235	0.16	-0.3
4,158,403	-		DZA65_RS19235	0.16	-0.9
4,158,403	-		DZA65_RS19235	0.16	-2.6
4,158,403	-		DZA65_RS19235	0.16	-1.2
4,158,403	-		DZA65_RS19235	0.16	+0.6
4,158,403	-		DZA65_RS19235	0.16	-2.4
4,158,403	-		DZA65_RS19235	0.16	-1.7
4,158,403	-		DZA65_RS19235	0.16	-0.7
4,158,405	+		DZA65_RS19235	0.16	+0.4
4,158,405	+		DZA65_RS19235	0.16	-0.9
4,158,405	+		DZA65_RS19235	0.16	-2.9
4,158,405	+		DZA65_RS19235	0.16	+1.1
4,158,405	+		DZA65_RS19235	0.16	+0.4
4,158,406	-		DZA65_RS19235	0.17	-1.9
4,158,406	-		DZA65_RS19235	0.17	-1.9
4,158,406	-		DZA65_RS19235	0.17	+2.7
4,158,406	-		DZA65_RS19235	0.17	+1.1
4,158,406	-		DZA65_RS19235	0.17	-0.5
4,158,406	-		DZA65_RS19235	0.17	-1.4
4,158,648	+		DZA65_RS19235	0.34	-0.3
4,158,648	+		DZA65_RS19235	0.34	-1.7
4,158,648	+		DZA65_RS19235	0.34	-0.9
4,158,648	+		DZA65_RS19235	0.34	+1.1
4,158,648	+		DZA65_RS19235	0.34	+0.9
4,158,649	-				+0.8
4,158,649	-		DZA65_RS19235	0.34	-0.4
4,158,649	-		DZA65_RS19235	0.34	+3.4
4,158,649	-		DZA65_RS19235	0.34	+0.5
4,158,649	-		DZA65_RS19235	0.34	+2.3
4,158,649	-		DZA65_RS19235	0.34	-0.3
4,158,651	+		DZA65_RS19235	0.34	-0.2
4,158,651	+		DZA65_RS19235	0.34	+1.0
4,158,651	+		DZA65_RS19235	0.34	-2.5
4,158,651	+		DZA65_RS19235	0.34	-0.9
4,158,652	-		DZA65_RS19235	0.34	-3.1