Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16920

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,654,521	-		DZA65_RS16910	0.88	-1.0
3,654,544	+		DZA65_RS16910	0.90	-1.0
3,654,754	+				-2.0
3,654,755	-				-0.6
3,654,803	-				+0.3
3,654,816	+				-0.7
3,654,816	+				-1.6
3,654,836	-				-0.9
3,654,836	-				-0.6
3,654,836	-				+0.1
3,654,858	+				+4.6
3,654,859	-				-0.8
3,654,859	-				-0.6
3,654,859	-				-0.2
3,654,889	+				-0.3
3,654,937	+				+0.2
3,654,937	+				+0.3
3,654,938	-				-1.0
3,654,960	+				+0.4
3,654,960	+				+2.0
3,654,960	+				-2.5
3,654,961	-				-1.2
3,654,961	-				-1.5
3,654,961	-				-0.6
3,654,961	-				-1.4
3,654,961	-				+1.1
3,654,961	-				+1.0
3,654,962	+				+1.5
3,654,962	+				-0.6
3,654,963	-				+1.0
3,654,963	-				+0.3
3,655,073	+		DZA65_RS16915	0.17	-0.0
3,655,073	+		DZA65_RS16915	0.17	-1.0
3,655,102	-		DZA65_RS16915	0.23	-1.6
3,655,457	+				-1.9
3,655,457	+				-1.4
3,655,458	-				+0.1
3,655,573	+		DZA65_RS16920	0.12	-1.6
3,655,657	-		DZA65_RS16920	0.21	+1.3
3,655,657	-		DZA65_RS16920	0.21	-0.1
3,655,657	-				+1.0
3,655,721	+		DZA65_RS16920	0.27	-0.4
3,655,722	-		DZA65_RS16920	0.28	-2.0
3,655,753	+		DZA65_RS16920	0.31	-0.6
3,655,945	+		DZA65_RS16920	0.51	-0.9
3,655,945	+		DZA65_RS16920	0.51	-0.5
3,655,945	+		DZA65_RS16920	0.51	+0.4
3,655,945	+		DZA65_RS16920	0.51	-0.2
3,655,946	-		DZA65_RS16920	0.51	+0.5
3,655,946	-		DZA65_RS16920	0.51	-1.9
3,655,946	-		DZA65_RS16920	0.51	+0.2
3,655,946	-		DZA65_RS16920	0.51	+0.3
3,655,947	+		DZA65_RS16920	0.51	-1.0
3,655,947	+		DZA65_RS16920	0.51	-0.4
3,655,947	+		DZA65_RS16920	0.51	+0.5
3,655,947	+		DZA65_RS16920	0.51	-0.5
3,655,947	+		DZA65_RS16920	0.51	-1.7
3,655,947	+		DZA65_RS16920	0.51	-1.9
3,655,948	-		DZA65_RS16920	0.51	+1.0
3,655,948	-		DZA65_RS16920	0.51	+1.8
3,655,948	-		DZA65_RS16920	0.51	-0.4
3,655,948	-		DZA65_RS16920	0.51	-0.6
3,656,029	+		DZA65_RS16920	0.60	+0.6
3,656,040	+		DZA65_RS16920	0.61	+0.6
3,656,041	-		DZA65_RS16920	0.61	-0.0
3,656,041	-		DZA65_RS16920	0.61	-0.4
3,656,057	+		DZA65_RS16920	0.63	-0.8
3,656,057	+		DZA65_RS16920	0.63	+0.2
3,656,057	+		DZA65_RS16920	0.63	-0.6
3,656,058	-		DZA65_RS16920	0.63	+0.9
3,656,058	-		DZA65_RS16920	0.63	+0.2
3,656,058	-		DZA65_RS16920	0.63	+0.4
3,656,058	-		DZA65_RS16920	0.63	-0.1
3,656,058	-		DZA65_RS16920	0.63	-1.0
3,656,058	-		DZA65_RS16920	0.63	-1.9
3,656,062	+		DZA65_RS16920	0.63	-0.9
3,656,063	-		DZA65_RS16920	0.63	-1.2
3,656,096	-		DZA65_RS16920	0.67	-2.6
3,656,096	-		DZA65_RS16920	0.67	-0.0
3,656,113	+		DZA65_RS16920	0.69	-0.0
3,656,139	+		DZA65_RS16920	0.71	-0.9
3,656,140	-		DZA65_RS16920	0.72	-0.0
3,656,140	-		DZA65_RS16920	0.72	-0.3
3,656,140	-		DZA65_RS16920	0.72	-1.6
3,656,140	-		DZA65_RS16920	0.72	-0.3
3,656,227	+		DZA65_RS16920	0.81	+0.1
3,656,227	+		DZA65_RS16920	0.81	+1.6
3,656,228	-		DZA65_RS16920	0.81	+1.5
3,656,228	-		DZA65_RS16920	0.81	+1.4
3,656,240	+		DZA65_RS16920	0.82	-1.1
3,656,241	-		DZA65_RS16920	0.82	-0.4
3,656,241	-		DZA65_RS16920	0.82	-1.0
3,656,241	-		DZA65_RS16920	0.82	-1.6
3,656,274	+		DZA65_RS16920	0.86	+1.5
3,656,274	+		DZA65_RS16920	0.86	+1.2
3,656,274	+		DZA65_RS16920	0.86	-1.9
3,656,275	-		DZA65_RS16920	0.86	+1.0
3,656,275	-		DZA65_RS16920	0.86	-2.6
3,656,275	-		DZA65_RS16920	0.86	-0.2
3,656,275	-		DZA65_RS16920	0.86	-0.4
3,656,275	-		DZA65_RS16920	0.86	+0.4
3,656,275	-		DZA65_RS16920	0.86	-0.4
3,656,275	-				-1.9
3,656,277	+		DZA65_RS16920	0.86	-0.4
3,656,278	-		DZA65_RS16920	0.86	-0.3
3,656,287	-		DZA65_RS16920	0.87	-1.9
3,656,361	+				-0.0
3,656,361	+				-0.0
3,656,361	+				-1.8
3,656,361	+				-1.8
3,656,361	+				+0.8
3,656,361	+				-0.2
3,656,362	-				-2.1
3,656,362	-				-0.0
3,656,362	-				-2.0
3,656,381	+				-1.4
3,656,381	+				-0.6
3,656,381	+				-1.2
3,656,381	+				-0.6
3,656,382	-				+0.3
3,656,382	-				-0.4
3,656,383	+				-0.3
3,656,383	+				+0.6
3,656,383	+				+1.0
3,656,383	+				-1.0
3,656,383	+				-0.4
3,656,383	+				+0.1
3,656,383	+				-1.0
3,656,383	+				-1.6
3,656,383	+				+0.5
3,656,383	+				+0.2
3,656,383	+				-0.4
3,656,383	+				-0.8
3,656,383	+				+0.3
3,656,383	+				-0.6
3,656,383	+				-0.4
3,656,383	+				+0.4
3,656,383	+				-0.6
3,656,383	+				-1.8
3,656,383	+				-0.2
3,656,384	-				-1.8
3,656,384	-				+1.0
3,656,384	-				+0.1
3,656,384	-				-1.6
3,656,384	-				-0.5
3,656,384	-				+0.6
3,656,384	-				-2.5
3,656,384	-				-1.1
3,656,384	-				-0.8
3,656,384	-				-1.7
3,656,411	+				-2.6
3,656,412	-				+0.5
3,656,452	+				-0.7
3,656,525	+		DZA65_RS16925	0.17	-1.9
3,656,525	+		DZA65_RS16925	0.17	+0.5
3,656,526	-		DZA65_RS16925	0.17	-1.1
3,656,824	-		DZA65_RS16925	0.62	-1.0
3,657,087	-				+1.5
3,657,087	-				+1.0
3,657,087	-				-0.3
3,657,110	-				+3.0
3,657,127	-				+1.0
3,657,136	+				-2.5
3,657,136	+				+1.7
3,657,136	+				+0.3
3,657,151	+				-1.6
3,657,151	+				-0.1
3,657,151	+				-1.4
3,657,152	-				-1.6
3,657,152	-				-2.9
3,657,234	+		DZA65_RS16930	0.19	-3.3
3,657,235	-		DZA65_RS16930	0.19	-0.3
3,657,235	-		DZA65_RS16930	0.19	-1.0
3,657,235	-		DZA65_RS16930	0.19	-0.9
3,657,235	-		DZA65_RS16930	0.19	-0.8
3,657,235	-		DZA65_RS16930	0.19	-0.6
3,657,235	-		DZA65_RS16930	0.19	-2.3
3,657,235	-		DZA65_RS16930	0.19	-0.3
3,657,262	+		DZA65_RS16930	0.24	+0.4
3,657,262	+		DZA65_RS16930	0.24	-1.4
3,657,263	-		DZA65_RS16930	0.24	-0.9
3,657,299	-		DZA65_RS16930	0.30	-1.2
3,657,299	-		DZA65_RS16930	0.30	-0.3
3,657,299	-		DZA65_RS16930	0.30	-1.4
3,657,301	+		DZA65_RS16930	0.31	-2.0
3,657,301	+				-1.0
3,657,302	-		DZA65_RS16930	0.31	-1.0
3,657,302	-		DZA65_RS16930	0.31	-2.0
3,657,338	+		DZA65_RS16930	0.37	-2.0
3,657,338	+		DZA65_RS16930	0.37	+0.3
3,657,338	+		DZA65_RS16930	0.37	-1.8
3,657,338	+		DZA65_RS16930	0.37	-0.1
3,657,338	+		DZA65_RS16930	0.37	+0.5
3,657,338	+		DZA65_RS16930	0.37	-0.0
3,657,338	+		DZA65_RS16930	0.37	+1.0
3,657,338	+		DZA65_RS16930	0.37	+1.0
3,657,338	+		DZA65_RS16930	0.37	-0.0
3,657,339	-		DZA65_RS16930	0.37	-1.0
3,657,339	-		DZA65_RS16930	0.37	-1.7
3,657,339	-		DZA65_RS16930	0.37	-1.0
3,657,339	-		DZA65_RS16930	0.37	-2.4
3,657,339	-		DZA65_RS16930	0.37	-2.0
3,657,339	-		DZA65_RS16930	0.37	-1.5
3,657,339	-		DZA65_RS16930	0.37	+0.1
3,657,339	-		DZA65_RS16930	0.37	-2.9
3,657,339	-		DZA65_RS16930	0.37	-2.3
3,657,339	-		DZA65_RS16930	0.37	-0.4
3,657,356	+		DZA65_RS16930	0.40	-1.4
3,657,356	+		DZA65_RS16930	0.40	-1.8
3,657,356	+		DZA65_RS16930	0.40	-1.0
3,657,357	-		DZA65_RS16930	0.40	-1.7
3,657,357	-		DZA65_RS16930	0.40	-1.6
3,657,384	+		DZA65_RS16930	0.45	-0.0
3,657,407	+		DZA65_RS16930	0.49	-0.6
3,657,408	-		DZA65_RS16930	0.49	-1.6