Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15775

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,425,030	+				-3.1
3,425,091	+				-1.8
3,425,091	+				-0.9
3,425,178	+				+0.7
3,425,223	+		DZA65_RS15770	0.11	-2.3
3,425,223	+		DZA65_RS15770	0.11	-0.4
3,425,224	-				+0.4
3,425,265	+		DZA65_RS15770	0.16	-0.9
3,425,265	+		DZA65_RS15770	0.16	-1.3
3,425,265	+		DZA65_RS15770	0.16	+0.1
3,425,265	+		DZA65_RS15770	0.16	-0.7
3,425,266	-		DZA65_RS15770	0.16	+0.3
3,425,266	-		DZA65_RS15770	0.16	+0.6
3,425,266	-		DZA65_RS15770	0.16	+0.9
3,425,286	+		DZA65_RS15770	0.19	-0.1
3,425,286	+		DZA65_RS15770	0.19	+0.9
3,425,286	+		DZA65_RS15770	0.19	-0.5
3,425,286	+		DZA65_RS15770	0.19	-1.1
3,425,286	+		DZA65_RS15770	0.19	-0.1
3,425,286	+		DZA65_RS15770	0.19	+0.6
3,425,286	+		DZA65_RS15770	0.19	+0.1
3,425,287	-		DZA65_RS15770	0.19	+1.2
3,425,287	-		DZA65_RS15770	0.19	-0.3
3,425,287	-		DZA65_RS15770	0.19	-1.1
3,425,287	-		DZA65_RS15770	0.19	+1.5
3,425,287	-		DZA65_RS15770	0.19	+0.0
3,425,287	-		DZA65_RS15770	0.19	-1.1
3,425,287	-		DZA65_RS15770	0.19	-1.1
3,425,287	-		DZA65_RS15770	0.19	-0.3
3,425,287	-				-1.9
3,425,291	-		DZA65_RS15770	0.19	-0.1
3,425,306	+		DZA65_RS15770	0.21	+0.1
3,425,306	+		DZA65_RS15770	0.21	-0.1
3,425,306	+		DZA65_RS15770	0.21	-0.1
3,425,306	+		DZA65_RS15770	0.21	-1.1
3,425,306	+		DZA65_RS15770	0.21	-0.8
3,425,307	-		DZA65_RS15770	0.21	-1.1
3,425,307	-		DZA65_RS15770	0.21	-0.7
3,425,393	-		DZA65_RS15770	0.30	-0.4
3,425,490	+		DZA65_RS15770	0.41	-1.9
3,425,490	+		DZA65_RS15770	0.41	+1.7
3,425,490	+		DZA65_RS15770	0.41	-0.8
3,425,491	-		DZA65_RS15770	0.41	-0.9
3,425,491	-		DZA65_RS15770	0.41	-1.6
3,425,491	-		DZA65_RS15770	0.41	-0.1
3,425,491	-		DZA65_RS15770	0.41	-0.0
3,425,491	-		DZA65_RS15770	0.41	-1.1
3,425,491	-		DZA65_RS15770	0.41	-0.4
3,425,491	-		DZA65_RS15770	0.41	-0.6
3,425,491	-		DZA65_RS15770	0.41	-0.5
3,425,491	-		DZA65_RS15770	0.41	-1.0
3,425,491	-		DZA65_RS15770	0.41	-1.3
3,425,520	+		DZA65_RS15770	0.45	-1.9
3,425,520	+		DZA65_RS15770	0.45	+0.1
3,425,521	-		DZA65_RS15770	0.45	-0.6
3,425,521	-		DZA65_RS15770	0.45	-0.1
3,425,521	-		DZA65_RS15770	0.45	-0.6
3,425,521	-		DZA65_RS15770	0.45	-1.7
3,425,581	+		DZA65_RS15770	0.51	-0.1
3,425,676	+		DZA65_RS15770	0.62	+1.9
3,425,696	+		DZA65_RS15770	0.64	+0.2
3,425,696	+		DZA65_RS15770	0.64	+0.4
3,425,696	+		DZA65_RS15770	0.64	+0.9
3,425,697	-		DZA65_RS15770	0.64	-1.7
3,425,697	-		DZA65_RS15770	0.64	+0.9
3,425,713	+		DZA65_RS15770	0.66	-0.6
3,425,714	-		DZA65_RS15770	0.66	-1.3
3,425,757	+		DZA65_RS15770	0.71	-0.1
3,425,787	+		DZA65_RS15770	0.74	+0.2
3,425,816	-		DZA65_RS15770	0.78	+1.9
3,425,881	-		DZA65_RS15770	0.85	-0.9
3,425,950	+				+0.9
3,425,995	+				+0.5
3,426,028	+				+0.9
3,426,028	+				-0.4
3,426,028	+				+2.6
3,426,134	-				+0.2
3,426,235	+		DZA65_RS15775	0.16	+1.9
3,426,235	+		DZA65_RS15775	0.16	-0.8
3,426,235	+		DZA65_RS15775	0.16	-0.1
3,426,235	+		DZA65_RS15775	0.16	+0.6
3,426,235	+		DZA65_RS15775	0.16	-0.1
3,426,235	+		DZA65_RS15775	0.16	+1.5
3,426,236	-		DZA65_RS15775	0.16	-3.4
3,426,236	-		DZA65_RS15775	0.16	+0.2
3,426,239	+		DZA65_RS15775	0.16	-0.5
3,426,239	+		DZA65_RS15775	0.16	-1.7
3,426,239	+		DZA65_RS15775	0.16	-1.9
3,426,239	+		DZA65_RS15775	0.16	-1.7
3,426,239	+		DZA65_RS15775	0.16	-0.7
3,426,240	-		DZA65_RS15775	0.16	-1.1
3,426,240	-		DZA65_RS15775	0.16	-1.4
3,426,240	-		DZA65_RS15775	0.16	+1.7
3,426,240	-		DZA65_RS15775	0.16	+1.4
3,426,240	-		DZA65_RS15775	0.16	-1.9
3,426,240	-		DZA65_RS15775	0.16	-0.5
3,426,240	-		DZA65_RS15775	0.16	-1.4
3,426,240	-		DZA65_RS15775	0.16	-1.9
3,426,268	+		DZA65_RS15775	0.18	+1.5
3,426,268	+		DZA65_RS15775	0.18	-0.3
3,426,269	-		DZA65_RS15775	0.19	+1.5
3,426,298	+		DZA65_RS15775	0.21	-0.1
3,426,298	+		DZA65_RS15775	0.21	-1.6
3,426,299	-		DZA65_RS15775	0.21	-3.5
3,426,299	-		DZA65_RS15775	0.21	-0.0
3,426,318	-		DZA65_RS15775	0.22	-0.5
3,426,370	+		DZA65_RS15775	0.26	-0.1
3,426,371	-		DZA65_RS15775	0.26	-0.8
3,426,614	+		DZA65_RS15775	0.45	-1.0
3,426,614	+		DZA65_RS15775	0.45	-1.1
3,426,614	+		DZA65_RS15775	0.45	+1.4
3,426,615	-		DZA65_RS15775	0.45	+0.2
3,426,632	+		DZA65_RS15775	0.46	-1.1
3,426,683	+		DZA65_RS15775	0.50	-0.7
3,426,683	+		DZA65_RS15775	0.50	-1.0
3,426,684	-		DZA65_RS15775	0.50	-1.9
3,426,684	-				-0.4
3,426,718	-		DZA65_RS15775	0.53	-0.6
3,426,758	+		DZA65_RS15775	0.56	-0.1
3,426,758	+		DZA65_RS15775	0.56	+0.2
3,426,759	-		DZA65_RS15775	0.56	-1.4
3,426,759	-		DZA65_RS15775	0.56	-0.7
3,426,759	-		DZA65_RS15775	0.56	-0.7
3,426,759	-		DZA65_RS15775	0.56	+0.0
3,426,759	-		DZA65_RS15775	0.56	-0.7
3,426,759	-		DZA65_RS15775	0.56	-0.6
3,426,759	-		DZA65_RS15775	0.56	-1.3
3,426,767	+		DZA65_RS15775	0.57	-1.7
3,426,838	+		DZA65_RS15775	0.62	-0.2
3,426,838	+		DZA65_RS15775	0.62	+1.1
3,426,838	+		DZA65_RS15775	0.62	-0.7
3,426,838	+		DZA65_RS15775	0.62	-0.5
3,426,838	+		DZA65_RS15775	0.62	-1.0
3,426,838	+		DZA65_RS15775	0.62	-1.7
3,426,838	+		DZA65_RS15775	0.62	-1.0
3,426,839	-		DZA65_RS15775	0.62	-2.4
3,426,839	-		DZA65_RS15775	0.62	+0.9
3,426,839	-		DZA65_RS15775	0.62	-0.1
3,426,839	-		DZA65_RS15775	0.62	-0.3
3,426,839	-		DZA65_RS15775	0.62	+0.5
3,426,839	-		DZA65_RS15775	0.62	+0.1
3,426,839	-		DZA65_RS15775	0.62	-0.3
3,426,839	-		DZA65_RS15775	0.62	+0.8
3,426,839	-		DZA65_RS15775	0.62	-0.1
3,426,839	-		DZA65_RS15775	0.62	+0.1
3,426,839	-		DZA65_RS15775	0.62	-0.7
3,426,846	-		DZA65_RS15775	0.63	+0.5
3,426,915	-		DZA65_RS15775	0.68	-1.4
3,426,915	-		DZA65_RS15775	0.68	-0.4
3,427,036	+		DZA65_RS15775	0.77	-1.9
3,427,044	+		DZA65_RS15775	0.78	+0.5
3,427,075	-		DZA65_RS15775	0.80	+0.9
3,427,130	+		DZA65_RS15775	0.84	-1.7
3,427,131	-		DZA65_RS15775	0.84	-0.1
3,427,152	-		DZA65_RS15775	0.86	+0.9
3,427,180	+		DZA65_RS15775	0.88	+2.9
3,427,180	+		DZA65_RS15775	0.88	+0.6
3,427,180	+		DZA65_RS15775	0.88	+1.1
3,427,181	-		DZA65_RS15775	0.88	-0.7
3,427,231	+				-2.4
3,427,231	+				-0.1
3,427,232	-				-1.0
3,427,232	-				-1.3
3,427,232	-				+1.9
3,427,232	-				-1.3
3,427,328	+				-0.1
3,427,328	+				+0.9
3,427,329	-				-0.2
3,427,385	+				-2.7
3,427,386	-				-0.4
3,427,407	+				+0.9
3,427,407	+				+0.7
3,427,410	+				-0.3
3,427,410	+				-0.1
3,427,411	-				+0.1
3,427,589	-		DZA65_RS15780	0.14	-1.8
3,427,667	-		DZA65_RS15780	0.21	-0.4
3,427,667	-		DZA65_RS15780	0.21	-0.1
3,427,689	+		DZA65_RS15780	0.22	-0.5
3,427,690	-		DZA65_RS15780	0.22	-0.4
3,427,761	+		DZA65_RS15780	0.28	-0.3
3,427,761	+		DZA65_RS15780	0.28	-0.9
3,427,762	-		DZA65_RS15780	0.28	+0.0
3,427,762	-		DZA65_RS15780	0.28	+2.0
3,427,762	-		DZA65_RS15780	0.28	+0.0
3,427,762	-		DZA65_RS15780	0.28	-1.3
3,427,830	+		DZA65_RS15780	0.34	-0.0
3,427,964	-		DZA65_RS15780	0.44	+0.1
3,428,080	+		DZA65_RS15780	0.54	+1.1
3,428,089	+		DZA65_RS15780	0.54	+1.1
3,428,089	+		DZA65_RS15780	0.54	+0.4
3,428,089	+		DZA65_RS15780	0.54	-0.7
3,428,089	+		DZA65_RS15780	0.54	-2.0
3,428,089	+		DZA65_RS15780	0.54	-0.7
3,428,089	+		DZA65_RS15780	0.54	-0.3
3,428,089	+		DZA65_RS15780	0.54	-1.8
3,428,089	+		DZA65_RS15780	0.54	+0.6
3,428,089	+				-0.5
3,428,089	+		DZA65_RS15780	0.54	-1.1
3,428,089	+		DZA65_RS15780	0.54	-0.3
3,428,090	-		DZA65_RS15780	0.54	-0.9
3,428,090	-		DZA65_RS15780	0.54	-0.3
3,428,090	-		DZA65_RS15780	0.54	-0.7
3,428,090	-		DZA65_RS15780	0.54	-1.4
3,428,090	-		DZA65_RS15780	0.54	-1.3
3,428,090	-		DZA65_RS15780	0.54	-1.3
3,428,090	-		DZA65_RS15780	0.54	+0.9
3,428,090	-		DZA65_RS15780	0.54	+0.0
3,428,090	-		DZA65_RS15780	0.54	+0.6
3,428,090	-		DZA65_RS15780	0.54	-0.7
3,428,090	-		DZA65_RS15780	0.54	+2.2
3,428,090	-		DZA65_RS15780	0.54	+0.5
3,428,091	+		DZA65_RS15780	0.54	-2.3
3,428,091	+		DZA65_RS15780	0.54	+0.1
3,428,091	+		DZA65_RS15780	0.54	-0.0
3,428,092	-		DZA65_RS15780	0.54	+0.4
3,428,124	+		DZA65_RS15780	0.57	+0.5
3,428,124	+		DZA65_RS15780	0.57	+0.5
3,428,124	+				-1.3
3,428,124	+		DZA65_RS15780	0.57	+0.7
3,428,124	+		DZA65_RS15780	0.57	-0.2
3,428,124	+		DZA65_RS15780	0.57	-0.7
3,428,125	-		DZA65_RS15780	0.57	+0.2
3,428,125	-		DZA65_RS15780	0.57	-0.5
3,428,125	-		DZA65_RS15780	0.57	-1.8
3,428,125	-		DZA65_RS15780	0.57	+1.5
3,428,125	-		DZA65_RS15780	0.57	-1.0
3,428,128	-		DZA65_RS15780	0.57	-0.6
3,428,150	+		DZA65_RS15780	0.59	-1.9
3,428,193	+		DZA65_RS15780	0.63	+0.2
3,428,193	+		DZA65_RS15780	0.63	+0.9
3,428,194	-		DZA65_RS15780	0.63	-0.5
3,428,205	-		DZA65_RS15780	0.63	+0.4
3,428,205	-		DZA65_RS15780	0.63	-1.7
3,428,241	+		DZA65_RS15780	0.66	-1.5
3,428,242	-		DZA65_RS15780	0.66	+0.5
3,428,280	+		DZA65_RS15780	0.69	-0.4
3,428,280	+		DZA65_RS15780	0.69	-0.2
3,428,290	+		DZA65_RS15780	0.70	-0.4