Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12495

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,674,188	-				-0.6
2,674,188	-				-0.5
2,674,295	+		DZA65_RS12490	0.11	+0.1
2,674,295	+		DZA65_RS12490	0.11	-1.4
2,674,295	+		DZA65_RS12490	0.11	-2.5
2,674,295	+		DZA65_RS12490	0.11	+0.1
2,674,296	-		DZA65_RS12490	0.12	-1.3
2,674,296	-		DZA65_RS12490	0.12	+0.1
2,674,296	-		DZA65_RS12490	0.12	-2.9
2,674,296	-		DZA65_RS12490	0.12	-3.0
2,674,318	+		DZA65_RS12490	0.15	-0.9
2,674,514	+		DZA65_RS12490	0.45	+0.5
2,674,515	-		DZA65_RS12490	0.45	-2.6
2,674,533	+		DZA65_RS12490	0.48	-3.2
2,674,533	+		DZA65_RS12490	0.48	-0.7
2,674,714	+		DZA65_RS12490	0.76	-1.0
2,674,714	+		DZA65_RS12490	0.76	+2.3
2,674,714	+		DZA65_RS12490	0.76	+1.3
2,674,714	+		DZA65_RS12490	0.76	-2.3
2,674,715	-		DZA65_RS12490	0.76	+2.9
2,674,715	-		DZA65_RS12490	0.76	+0.5
2,674,715	-		DZA65_RS12490	0.76	+0.3
2,674,715	-		DZA65_RS12490	0.76	-0.3
2,674,715	-		DZA65_RS12490	0.76	+0.1
2,674,715	-		DZA65_RS12490	0.76	-0.9
2,674,715	-		DZA65_RS12490	0.76	-2.1
2,674,715	-		DZA65_RS12490	0.76	-1.1
2,674,941	-				+1.3
2,674,970	+				-0.1
2,674,988	+				-1.3
2,674,989	-				-0.2
2,674,989	-				-0.0
2,674,990	+				+1.2
2,674,990	+				-2.8
2,674,990	+				-0.3
2,674,991	-				-0.3
2,675,019	+				-0.3
2,675,027	-				-0.3
2,675,039	+				-1.1
2,675,043	-				-0.0
2,675,061	+				-0.2
2,675,065	+				-1.7
2,675,065	+				-0.6
2,675,065	+				-0.2
2,675,065	+				+0.4
2,675,066	-				+0.3
2,675,066	-				-0.9
2,675,168	+				-1.9
2,675,169	-				-1.3
2,675,169	-				+0.7
2,675,205	+				-0.3
2,675,205	+				+0.1
2,675,205	+				+1.5
2,675,205	+				+0.2
2,675,205	+				-0.0
2,675,205	+				+0.5
2,675,205	+				-1.1
2,675,205	+				+1.1
2,675,205	+				+2.3
2,675,206	-				-1.9
2,675,206	-				-0.5
2,675,206	-				+1.1
2,675,206	-				+0.6
2,675,206	-				-0.7
2,675,206	-				+1.0
2,675,206	-				-1.0
2,675,206	-				-0.2
2,675,206	-				-2.1
2,675,206	-				-1.9
2,675,206	-				-1.5
2,675,217	+				+1.3
2,675,217	+				-2.4
2,675,217	+				+1.0
2,675,217	+				-2.3
2,675,218	-				-0.3
2,675,218	-				+1.3
2,675,227	+				-2.3
2,675,227	+				+1.0
2,675,227	+				-0.6
2,675,227	+				+1.1
2,675,227	+				+0.3
2,675,227	+				+0.7
2,675,227	+				-0.4
2,675,227	+				-0.0
2,675,227	+				+0.3
2,675,227	+				+0.5
2,675,227	+				+0.1
2,675,227	+				-1.9
2,675,227	+				-1.0
2,675,227	+				-1.3
2,675,227	+				+0.8
2,675,228	-				-0.1
2,675,228	-				-1.9
2,675,228	-				+1.3
2,675,228	-				+0.7
2,675,228	-				-0.3
2,675,228	-				+0.7
2,675,228	-				-2.5
2,675,228	-				-0.5
2,675,228	-				-0.0
2,675,228	-				-1.1
2,675,231	+				-0.9
2,675,231	+				-1.5
2,675,231	+				-2.3
2,675,231	+				-1.0
2,675,231	+				+0.5
2,675,231	+				-1.1
2,675,231	+				+0.5
2,675,231	+				+2.3
2,675,231	+				-1.3
2,675,231	+				-0.9
2,675,231	+				+1.0
2,675,231	+				-2.5
2,675,231	+				-0.6
2,675,231	+				-2.6
2,675,231	+				-2.3
2,675,231	+				-0.8
2,675,231	+				-1.6
2,675,231	+				-0.3
2,675,231	+				+0.1
2,675,231	+				+0.8
2,675,231	+				-1.6
2,675,231	+				-1.6
2,675,231	+				+0.1
2,675,231	+				-1.3
2,675,231	+				-0.6
2,675,231	+				+0.7
2,675,231	+				+1.6
2,675,231	+				-1.3
2,675,231	+				-2.1
2,675,231	+				-1.6
2,675,231	+				+0.3
2,675,232	-				-0.6
2,675,232	-				-1.9
2,675,232	-				-1.6
2,675,232	-				-0.9
2,675,232	-				+0.8
2,675,232	-				-2.3
2,675,232	-				-3.2
2,675,232	-				-0.3
2,675,232	-				-0.9
2,675,232	-				-0.4
2,675,232	-				+1.1
2,675,232	-				-0.9
2,675,232	-				-0.1
2,675,232	-				-0.4
2,675,232	-				+0.2
2,675,232	-				-1.6
2,675,232	-				+2.3
2,675,232	-				-1.0
2,675,232	-				-0.2
2,675,232	-				+0.9
2,675,232	-				+1.6
2,675,232	-				+2.0
2,675,232	-				-1.1
2,675,232	-				-2.9
2,675,232	-				+0.0
2,675,232	-				+1.6
2,675,235	+				-0.7
2,675,300	+		DZA65_RS12495	0.12	+0.6
2,675,300	+		DZA65_RS12495	0.12	+0.1
2,675,300	+		DZA65_RS12495	0.12	-1.9
2,675,301	-		DZA65_RS12495	0.12	+0.6
2,675,301	-		DZA65_RS12495	0.12	+1.2
2,675,315	-		DZA65_RS12495	0.13	-0.1
2,675,340	+		DZA65_RS12495	0.15	-0.8
2,675,341	-		DZA65_RS12495	0.15	-1.5
2,675,359	+		DZA65_RS12495	0.17	+1.8
2,675,359	+				-1.3
2,675,360	-		DZA65_RS12495	0.17	-0.3
2,675,399	+		DZA65_RS12495	0.20	+1.3
2,675,399	+		DZA65_RS12495	0.20	+0.4
2,675,400	-		DZA65_RS12495	0.20	-0.9
2,675,400	-		DZA65_RS12495	0.20	-1.6
2,675,400	-		DZA65_RS12495	0.20	+0.3
2,675,417	+		DZA65_RS12495	0.21	+0.1
2,675,417	+		DZA65_RS12495	0.21	-1.0
2,675,418	-		DZA65_RS12495	0.21	+0.7
2,675,418	-		DZA65_RS12495	0.21	-0.7
2,675,514	+		DZA65_RS12495	0.29	-0.9
2,675,515	-		DZA65_RS12495	0.29	+1.7
2,675,559	+		DZA65_RS12495	0.32	-0.6
2,675,559	+		DZA65_RS12495	0.32	-1.0
2,675,559	+		DZA65_RS12495	0.32	-0.6
2,675,559	+		DZA65_RS12495	0.32	+0.1
2,675,559	+				-0.1
2,675,560	-		DZA65_RS12495	0.32	-0.5
2,675,560	-		DZA65_RS12495	0.32	-0.1
2,675,603	-		DZA65_RS12495	0.36	+4.2
2,675,603	-		DZA65_RS12495	0.36	+0.1
2,675,682	+		DZA65_RS12495	0.42	-1.3
2,675,682	+		DZA65_RS12495	0.42	-1.9
2,675,682	+		DZA65_RS12495	0.42	-0.3
2,675,682	+		DZA65_RS12495	0.42	-1.3
2,675,682	+		DZA65_RS12495	0.42	-0.6
2,675,682	+		DZA65_RS12495	0.42	-0.1
2,675,682	+		DZA65_RS12495	0.42	-0.9
2,675,683	-		DZA65_RS12495	0.42	-1.3
2,675,683	-		DZA65_RS12495	0.42	-0.3
2,675,683	-		DZA65_RS12495	0.42	-1.3
2,675,763	+		DZA65_RS12495	0.48	-0.0
2,675,763	+		DZA65_RS12495	0.48	-2.1
2,675,764	-		DZA65_RS12495	0.49	-0.9
2,675,764	-		DZA65_RS12495	0.49	-2.3
2,675,764	-		DZA65_RS12495	0.49	+1.0
2,675,786	+		DZA65_RS12495	0.50	-2.8
2,675,786	+		DZA65_RS12495	0.50	+1.1
2,675,800	+		DZA65_RS12495	0.51	+0.7
2,675,801	-		DZA65_RS12495	0.51	+0.4
2,675,801	-		DZA65_RS12495	0.51	-1.1
2,675,801	-		DZA65_RS12495	0.51	+1.3
2,675,801	-		DZA65_RS12495	0.51	-0.3
2,675,803	-		DZA65_RS12495	0.52	+0.5
2,675,814	+		DZA65_RS12495	0.52	-1.3
2,675,814	+		DZA65_RS12495	0.52	-0.3
2,675,815	-		DZA65_RS12495	0.53	-0.3
2,675,815	-		DZA65_RS12495	0.53	+0.1
2,675,815	-		DZA65_RS12495	0.53	-1.6
2,675,931	-		DZA65_RS12495	0.62	-1.1
2,675,973	-		DZA65_RS12495	0.65	+0.5
2,675,981	+		DZA65_RS12495	0.66	-1.0
2,675,981	+		DZA65_RS12495	0.66	-0.0
2,675,993	+		DZA65_RS12495	0.67	+1.4
2,676,009	+		DZA65_RS12495	0.68	-0.3
2,676,015	+		DZA65_RS12495	0.68	+1.9
2,676,016	-		DZA65_RS12495	0.68	+0.2
2,676,016	-		DZA65_RS12495	0.68	-0.1
2,676,174	-		DZA65_RS12495	0.81	+1.0
2,676,185	+				-0.9
2,676,186	-		DZA65_RS12495	0.82	+0.7
2,676,186	-		DZA65_RS12495	0.82	-0.6
2,676,325	+				-1.6
2,676,326	-				+0.2
2,676,326	-				+0.2
2,676,326	-				+0.3
2,676,459	-				-0.1
2,676,465	-				-1.9
2,676,465	-				-0.9
2,676,465	-				-1.5
2,676,488	-				+0.4
2,676,502	+				-1.1
2,676,517	+				-1.2
2,676,517	+				-0.6
2,676,517	+				-0.1
2,676,517	+				-2.5
2,676,517	+				+0.8
2,676,517	+				+0.7
2,676,517	+				+0.7
2,676,517	+				-1.6
2,676,517	+				+0.1
2,676,518	-				+0.0
2,676,518	-				-1.3
2,676,518	-				-2.5
2,676,518	-				+0.6
2,676,518	-				+1.3
2,676,518	-				-2.8
2,676,518	-				-1.6
2,676,518	-				-0.8
2,676,518	-				-0.0
2,676,518	-				-0.3
2,676,518	-				-0.4
2,676,518	-				+0.1
2,676,518	-				-1.9
2,676,518	-				+1.0
2,676,518	-				-1.2
2,676,519	+				-1.0
2,676,519	+				+1.3
2,676,519	+				+0.9
2,676,519	+				-0.2
2,676,519	+				-1.1
2,676,519	+				+2.5
2,676,520	-				+1.5
2,676,520	-				-0.3
2,676,520	-				-0.9
2,676,523	+				-0.6
2,676,546	+				+1.6
2,676,575	+				-1.3
2,676,575	+				+0.9
2,676,576	-				-0.9
2,676,621	-				+1.1
2,676,636	+				-0.5
2,676,637	-				+0.0
2,676,637	-				-1.1
2,676,772	+		DZA65_RS12500	0.12	-1.6
2,676,790	+		DZA65_RS12500	0.14	+0.7
2,676,790	+		DZA65_RS12500	0.14	+0.9
2,676,791	-		DZA65_RS12500	0.14	+0.4
2,676,791	-		DZA65_RS12500	0.14	-2.2
2,676,812	+		DZA65_RS12500	0.16	+0.4
2,676,812	+		DZA65_RS12500	0.16	-1.9
2,676,906	+		DZA65_RS12500	0.25	+0.9
2,676,906	+		DZA65_RS12500	0.25	-1.1
2,676,906	+		DZA65_RS12500	0.25	-0.2
2,676,906	+		DZA65_RS12500	0.25	+0.4
2,676,906	+		DZA65_RS12500	0.25	-1.0
2,676,907	-		DZA65_RS12500	0.25	-1.0
2,676,907	-		DZA65_RS12500	0.25	+0.2
2,676,907	-		DZA65_RS12500	0.25	-0.2
2,676,907	-		DZA65_RS12500	0.25	-1.1
2,676,912	-		DZA65_RS12500	0.25	-1.6
2,676,912	-		DZA65_RS12500	0.25	-1.3
2,676,969	+		DZA65_RS12500	0.30	-1.9
2,676,969	+		DZA65_RS12500	0.30	-2.3
2,676,969	+		DZA65_RS12500	0.30	-1.3
2,676,969	+		DZA65_RS12500	0.30	+0.3
2,676,969	+		DZA65_RS12500	0.30	-1.7
2,676,969	+		DZA65_RS12500	0.30	-1.2
2,676,969	+		DZA65_RS12500	0.30	-0.5
2,676,969	+				-2.3
2,676,969	+		DZA65_RS12500	0.30	-1.3
2,676,969	+				-0.6
2,676,970	-		DZA65_RS12500	0.31	+0.4
2,676,970	-		DZA65_RS12500	0.31	-1.9
2,676,970	-		DZA65_RS12500	0.31	-0.3
2,676,970	-		DZA65_RS12500	0.31	+0.1
2,676,970	-		DZA65_RS12500	0.31	-2.8
2,677,019	-		DZA65_RS12500	0.35	+0.3
2,677,171	+		DZA65_RS12500	0.50	+0.5
2,677,172	-		DZA65_RS12500	0.50	+1.7
2,677,187	+		DZA65_RS12500	0.51	+0.0
2,677,188	-		DZA65_RS12500	0.51	+1.1
2,677,188	-		DZA65_RS12500	0.51	-1.3
2,677,241	+		DZA65_RS12500	0.56	-1.3
2,677,253	-		DZA65_RS12500	0.57	-0.9
2,677,295	+		DZA65_RS12500	0.61	-0.4
2,677,295	+		DZA65_RS12500	0.61	+0.3
2,677,295	+		DZA65_RS12500	0.61	+0.7