Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11260

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,388,117	-		DZA65_RS11255	0.36	+1.6
2,388,117	-		DZA65_RS11255	0.36	+0.9
2,388,117	-		DZA65_RS11255	0.36	-0.7
2,388,147	+		DZA65_RS11255	0.39	+2.2
2,388,237	+		DZA65_RS11255	0.50	+0.2
2,388,237	+		DZA65_RS11255	0.50	+1.1
2,388,237	+		DZA65_RS11255	0.50	-0.8
2,388,248	-		DZA65_RS11255	0.51	+1.8
2,388,249	+		DZA65_RS11255	0.51	-0.1
2,388,250	-		DZA65_RS11255	0.51	-1.9
2,388,344	-		DZA65_RS11255	0.62	+1.8
2,388,366	+		DZA65_RS11255	0.65	-1.4
2,388,366	+		DZA65_RS11255	0.65	-0.6
2,388,367	-		DZA65_RS11255	0.65	-1.1
2,388,511	-		DZA65_RS11255	0.82	-1.4
2,388,511	-		DZA65_RS11255	0.82	-0.9
2,388,530	+		DZA65_RS11255	0.84	+1.6
2,388,530	+		DZA65_RS11255	0.84	-0.4
2,388,531	-		DZA65_RS11255	0.84	-0.6
2,388,531	-		DZA65_RS11255	0.84	-0.1
2,388,531	-		DZA65_RS11255	0.84	+0.1
2,388,531	-		DZA65_RS11255	0.84	+0.6
2,388,531	-		DZA65_RS11255	0.84	+0.1
2,388,531	-		DZA65_RS11255	0.84	-0.5
2,388,531	-		DZA65_RS11255	0.84	+0.2
2,388,551	-		DZA65_RS11255	0.86	-0.5
2,388,685	-				+0.9
2,388,694	+				-1.9
2,388,694	+				-1.2
2,388,694	+				-0.7
2,388,700	+				-0.9
2,388,714	+				-0.4
2,388,776	+				-0.5
2,388,776	+				-2.2
2,388,776	+				-1.9
2,388,776	+				+1.9
2,388,776	+				-0.4
2,388,776	+				+1.6
2,388,776	+				-2.2
2,388,777	-				-0.7
2,388,777	-				+0.6
2,388,777	-				-1.7
2,388,777	-				+0.1
2,388,777	-				-0.3
2,388,777	-				+0.1
2,388,795	+				+0.6
2,388,828	-				+1.1
2,388,895	+				+0.5
2,388,896	-				-1.2
2,388,896	-				-0.7
2,388,919	+				+0.6
2,388,940	+				+1.6
2,388,941	-				-0.8
2,388,948	-				-1.4
2,388,978	+				+0.2
2,388,978	+				-2.5
2,388,978	+				-1.0
2,388,978	+				-1.8
2,388,988	-				-2.4
2,388,988	-				-2.1
2,388,988	-				-2.5
2,389,002	+				-1.9
2,389,002	+				-0.6
2,389,002	+				-1.4
2,389,002	+				-2.9
2,389,006	+				-0.2
2,389,007	-				-1.4
2,389,030	+				-0.6
2,389,031	-				-0.6
2,389,031	-				-1.4
2,389,033	-				-1.8
2,389,043	-				-2.4
2,389,073	-				-2.3
2,389,105	-				-4.0
2,389,110	+				-1.8
2,389,111	-				-1.4
2,389,125	+				-0.9
2,389,166	+				-2.8
2,389,167	-				-2.5
2,389,167	-				-2.4
2,389,167	-				-2.6
2,389,185	+				-0.4
2,389,186	-				+0.1
2,389,249	+		DZA65_RS11260	0.12	-2.4
2,389,249	+		DZA65_RS11260	0.12	-2.7
2,389,249	+		DZA65_RS11260	0.12	-2.9
2,389,249	+		DZA65_RS11260	0.12	-0.4
2,389,249	+		DZA65_RS11260	0.12	-3.2
2,389,249	+		DZA65_RS11260	0.12	-3.8
2,389,249	+		DZA65_RS11260	0.12	-2.9
2,389,250	-		DZA65_RS11260	0.12	-0.4
2,389,250	-		DZA65_RS11260	0.12	-1.9
2,389,250	-		DZA65_RS11260	0.12	-1.7
2,389,250	-		DZA65_RS11260	0.12	-1.4
2,389,250	-		DZA65_RS11260	0.12	-1.7
2,389,250	-		DZA65_RS11260	0.12	-0.9
2,389,277	+		DZA65_RS11260	0.14	-2.0
2,389,277	+		DZA65_RS11260	0.14	-1.3
2,389,277	+		DZA65_RS11260	0.14	-3.9
2,389,300	-		DZA65_RS11260	0.16	-2.8
2,389,300	-		DZA65_RS11260	0.16	-2.4
2,389,300	-		DZA65_RS11260	0.16	-1.7
2,389,300	-		DZA65_RS11260	0.16	-3.4
2,389,361	+		DZA65_RS11260	0.20	-3.9
2,389,362	-		DZA65_RS11260	0.20	-0.6
2,389,384	+		DZA65_RS11260	0.22	-0.9
2,389,478	+		DZA65_RS11260	0.29	-1.8
2,389,478	+		DZA65_RS11260	0.29	-2.7
2,389,478	+		DZA65_RS11260	0.29	-1.7
2,389,479	-		DZA65_RS11260	0.29	-1.9
2,389,479	-		DZA65_RS11260	0.29	-2.6
2,389,876	-		DZA65_RS11260	0.59	-2.9
2,390,055	+				-1.9
2,390,142	+				-0.7
2,390,142	+		DZA65_RS11260	0.80	-2.2
2,390,142	+		DZA65_RS11260	0.80	-2.2
2,390,142	+		DZA65_RS11260	0.80	+0.0
2,390,143	-		DZA65_RS11260	0.80	-2.9
2,390,143	-		DZA65_RS11260	0.80	-1.4
2,390,154	+		DZA65_RS11260	0.80	-3.3
2,390,155	-		DZA65_RS11260	0.81	-0.1
2,390,155	-		DZA65_RS11260	0.81	-0.7
2,390,183	-				-2.4
2,390,186	+		DZA65_RS11260	0.83	-1.4
2,390,187	-		DZA65_RS11260	0.83	-2.7
2,390,350	+				-2.3
2,390,350	+				-0.6
2,390,350	+				-0.4
2,390,350	+				-0.7
2,390,351	-				-2.7
2,390,351	-				-0.1
2,390,351	-				-3.4
2,390,351	-				-2.2
2,390,380	-				-2.2
2,390,392	+				-2.2
2,390,393	-				+0.1
2,390,393	-				-1.1
2,390,393	-				-1.4
2,390,393	-				-1.5
2,390,408	+				-2.5
2,390,408	+				-4.6
2,390,408	+				-1.7
2,390,409	-				-1.6
2,390,409	-				-2.1
2,390,434	+				-1.8
2,390,434	+				-0.4
2,390,434	+				-2.3
2,390,434	+				+0.6
2,390,434	+				-0.9
2,390,434	+				-1.9
2,390,435	-				-2.8
2,390,448	+				-1.9
2,390,448	+				-1.5
2,390,448	+				-2.5
2,390,449	-				-2.3
2,390,449	-				+0.2
2,390,572	+				-3.0
2,390,572	+				-0.1
2,390,573	-				-0.6
2,390,593	+				-3.6
2,390,594	-				-1.9
2,390,594	-				-1.7
2,390,650	+				+0.6
2,390,687	+				-1.4
2,390,687	+				-1.7
2,390,687	+				-2.7
2,390,687	+				-1.4
2,390,687	+				-1.7
2,390,688	-				-2.2
2,390,688	-				-1.4
2,390,688	-				-1.2
2,390,688	-				-2.7
2,390,727	+		DZA65_RS11265	0.10	-2.5
2,390,728	-		DZA65_RS11265	0.11	-1.4
2,390,733	+		DZA65_RS11265	0.11	-0.9
2,390,734	-		DZA65_RS11265	0.11	-1.9
2,390,734	-		DZA65_RS11265	0.11	-0.9
2,390,748	+		DZA65_RS11265	0.11	-1.8
2,390,762	+		DZA65_RS11265	0.12	-1.9
2,390,762	+		DZA65_RS11265	0.12	-1.8
2,390,762	+		DZA65_RS11265	0.12	-2.1
2,390,762	+		DZA65_RS11265	0.12	-2.4
2,390,763	-		DZA65_RS11265	0.12	-2.9
2,390,907	+		DZA65_RS11265	0.17	-3.4
2,390,907	+		DZA65_RS11265	0.17	-2.5
2,390,907	+		DZA65_RS11265	0.17	-1.5
2,390,917	+		DZA65_RS11265	0.17	-1.4
2,390,917	+		DZA65_RS11265	0.17	-4.4
2,390,918	-		DZA65_RS11265	0.17	-2.9
2,390,918	-		DZA65_RS11265	0.17	-2.9
2,391,056	-		DZA65_RS11265	0.21	-1.7
2,391,067	+		DZA65_RS11265	0.22	-2.7
2,391,085	-		DZA65_RS11265	0.22	-1.9
2,391,088	-		DZA65_RS11265	0.23	-2.2
2,391,247	+		DZA65_RS11265	0.28	-2.5
2,391,247	+		DZA65_RS11265	0.28	-2.5
2,391,248	-		DZA65_RS11265	0.28	-1.1
2,391,248	-		DZA65_RS11265	0.28	-2.4
2,391,248	-		DZA65_RS11265	0.28	+0.1
2,391,248	-		DZA65_RS11265	0.28	-1.8
2,391,248	-		DZA65_RS11265	0.28	-2.5
2,391,248	-		DZA65_RS11265	0.28	+0.1
2,391,248	-		DZA65_RS11265	0.28	-1.7
2,391,248	-		DZA65_RS11265	0.28	-2.2
2,391,255	-		DZA65_RS11265	0.28	-2.2
2,391,283	+		DZA65_RS11265	0.29	-1.4
2,391,283	+		DZA65_RS11265	0.29	+0.6
2,391,283	+		DZA65_RS11265	0.29	-1.9
2,391,283	+		DZA65_RS11265	0.29	-2.4
2,391,283	+		DZA65_RS11265	0.29	-1.8
2,391,283	+		DZA65_RS11265	0.29	-2.8
2,391,284	-		DZA65_RS11265	0.29	-3.7
2,391,284	-		DZA65_RS11265	0.29	-1.4
2,391,284	-		DZA65_RS11265	0.29	-1.5
2,391,284	-		DZA65_RS11265	0.29	-0.1
2,391,284	-		DZA65_RS11265	0.29	-2.6
2,391,284	-		DZA65_RS11265	0.29	-1.7
2,391,284	-		DZA65_RS11265	0.29	-2.2
2,391,287	+		DZA65_RS11265	0.29	-3.4
2,391,287	+		DZA65_RS11265	0.29	-3.6
2,391,287	+		DZA65_RS11265	0.29	-3.1
2,391,287	+		DZA65_RS11265	0.29	-1.9
2,391,288	-		DZA65_RS11265	0.29	-4.4
2,391,288	-		DZA65_RS11265	0.29	-2.5
2,391,288	-		DZA65_RS11265	0.29	-3.0
2,391,288	-		DZA65_RS11265	0.29	-1.8
2,391,288	-		DZA65_RS11265	0.29	-1.5
2,391,288	-		DZA65_RS11265	0.29	-3.1
2,391,289	+		DZA65_RS11265	0.29	-1.2
2,391,289	+		DZA65_RS11265	0.29	+2.0
2,391,289	+		DZA65_RS11265	0.29	-4.0
2,391,289	+		DZA65_RS11265	0.29	-1.1
2,391,289	+		DZA65_RS11265	0.29	-3.9
2,391,290	-		DZA65_RS11265	0.29	-1.9
2,391,290	-		DZA65_RS11265	0.29	-1.7
2,391,290	-		DZA65_RS11265	0.29	-2.8
2,391,290	-		DZA65_RS11265	0.29	-3.6
2,391,290	-		DZA65_RS11265	0.29	-1.2