Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07195

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
1,494,598	-		DZA65_RS07185	0.11	-1.7
1,494,653	-		DZA65_RS07185	0.31	-0.5
1,494,688	-		DZA65_RS07185	0.44	-0.6
1,494,707	-		DZA65_RS07185	0.51	+0.4
1,494,721	+		DZA65_RS07185	0.56	+0.8
1,494,721	+		DZA65_RS07185	0.56	+0.6
1,494,721	+		DZA65_RS07185	0.56	-2.0
1,494,722	-		DZA65_RS07185	0.57	+0.1
1,494,728	+		DZA65_RS07185	0.59	-0.7
1,494,808	+		DZA65_RS07185	0.89	-0.1
1,494,808	+		DZA65_RS07185	0.89	-3.1
1,494,847	+				-1.7
1,494,851	-				-1.2
1,494,931	+				+2.3
1,494,932	-				-0.3
1,494,932	-				-0.6
1,494,970	+				-0.7
1,495,030	+		DZA65_RS07190	0.17	-2.5
1,495,031	-		DZA65_RS07190	0.18	-1.9
1,495,046	+		DZA65_RS07190	0.20	-0.3
1,495,046	+		DZA65_RS07190	0.20	+0.5
1,495,046	+		DZA65_RS07190	0.20	+0.9
1,495,046	+		DZA65_RS07190	0.20	-1.7
1,495,084	-		DZA65_RS07190	0.25	-0.3
1,495,084	-		DZA65_RS07190	0.25	-1.0
1,495,084	-		DZA65_RS07190	0.25	-0.7
1,495,110	-		DZA65_RS07190	0.29	+2.1
1,495,149	-		DZA65_RS07190	0.35	-0.4
1,495,339	+		DZA65_RS07190	0.63	+1.4
1,495,339	+		DZA65_RS07190	0.63	-0.7
1,495,340	-		DZA65_RS07190	0.63	+0.3
1,495,379	+		DZA65_RS07190	0.69	+1.9
1,495,379	+		DZA65_RS07190	0.69	+1.8
1,495,379	+		DZA65_RS07190	0.69	-0.1
1,495,380	-		DZA65_RS07190	0.69	+1.0
1,495,410	-		DZA65_RS07190	0.74	+0.8
1,495,410	-		DZA65_RS07190	0.74	+0.1
1,495,470	+		DZA65_RS07190	0.83	+0.4
1,495,470	+		DZA65_RS07190	0.83	+1.7
1,495,470	+		DZA65_RS07190	0.83	+0.0
1,495,473	-		DZA65_RS07190	0.83	-0.4
1,495,473	-		DZA65_RS07190	0.83	-0.3
1,495,483	-		DZA65_RS07190	0.85	-2.2
1,495,483	-		DZA65_RS07190	0.85	-0.5
1,495,527	+				+0.6
1,495,527	+				-1.5
1,495,527	+				-1.7
1,495,527	+				-1.2
1,495,527	+				+0.2
1,495,527	+				-0.2
1,495,527	+				+0.3
1,495,527	+				-0.5
1,495,527	+				-0.9
1,495,527	+				-1.2
1,495,528	-				+0.1
1,495,528	-				-0.9
1,495,528	-				-1.2
1,495,528	-				+1.2
1,495,528	-				-0.7
1,495,528	-				-2.3
1,495,528	-				-1.2
1,495,528	-				-1.7
1,495,528	-				-1.0
1,495,568	+				-0.3
1,495,576	-				-1.2
1,495,596	-				-2.2
1,495,663	+				+0.1
1,495,674	+		DZA65_RS07195	0.10	+2.4
1,495,674	+		DZA65_RS07195	0.10	-0.1
1,495,675	-		DZA65_RS07195	0.10	+1.4
1,495,734	+		DZA65_RS07195	0.18	-1.2
1,495,780	+		DZA65_RS07195	0.24	-0.5
1,495,845	+		DZA65_RS07195	0.32	+1.1
1,495,905	+		DZA65_RS07195	0.40	-1.2
1,495,905	+		DZA65_RS07195	0.40	-0.7
1,495,905	+		DZA65_RS07195	0.40	+0.1
1,495,905	+		DZA65_RS07195	0.40	+0.1
1,495,905	+		DZA65_RS07195	0.40	-0.2
1,495,905	+		DZA65_RS07195	0.40	-0.0
1,495,905	+		DZA65_RS07195	0.40	-1.2
1,495,905	+		DZA65_RS07195	0.40	-1.5
1,495,905	+		DZA65_RS07195	0.40	-0.2
1,495,905	+		DZA65_RS07195	0.40	+0.6
1,495,905	+		DZA65_RS07195	0.40	+0.8
1,495,906	-		DZA65_RS07195	0.40	+1.2
1,495,906	-		DZA65_RS07195	0.40	+2.1
1,495,906	-		DZA65_RS07195	0.40	+0.3
1,495,906	-		DZA65_RS07195	0.40	-1.7
1,495,906	-		DZA65_RS07195	0.40	+1.0
1,495,906	-		DZA65_RS07195	0.40	+1.6
1,495,906	-		DZA65_RS07195	0.40	+0.2
1,495,906	-		DZA65_RS07195	0.40	+0.4
1,495,906	-		DZA65_RS07195	0.40	-0.3
1,495,907	+		DZA65_RS07195	0.40	+1.8
1,495,908	-		DZA65_RS07195	0.40	-1.0
1,496,016	+		DZA65_RS07195	0.54	-1.2
1,496,016	+		DZA65_RS07195	0.54	+0.0
1,496,016	+		DZA65_RS07195	0.54	+1.1
1,496,016	+		DZA65_RS07195	0.54	-1.0
1,496,016	+		DZA65_RS07195	0.54	+0.8
1,496,016	+		DZA65_RS07195	0.54	+0.8
1,496,017	-		DZA65_RS07195	0.54	-1.3
1,496,017	-		DZA65_RS07195	0.54	-1.9
1,496,017	-		DZA65_RS07195	0.54	+0.5
1,496,017	-		DZA65_RS07195	0.54	+0.6
1,496,017	-		DZA65_RS07195	0.54	+0.4
1,496,017	-		DZA65_RS07195	0.54	+0.2
1,496,017	-		DZA65_RS07195	0.54	-0.2
1,496,025	+		DZA65_RS07195	0.55	+2.3
1,496,025	+		DZA65_RS07195	0.55	+0.4
1,496,026	-		DZA65_RS07195	0.55	-2.2
1,496,026	-		DZA65_RS07195	0.55	-1.5
1,496,026	-		DZA65_RS07195	0.55	-0.0
1,496,026	-		DZA65_RS07195	0.55	+3.4
1,496,026	-		DZA65_RS07195	0.55	-1.7
1,496,101	+		DZA65_RS07195	0.65	+0.5
1,496,101	+		DZA65_RS07195	0.65	+0.8
1,496,101	+		DZA65_RS07195	0.65	+0.3
1,496,102	-		DZA65_RS07195	0.65	-0.4
1,496,102	-		DZA65_RS07195	0.65	+0.4
1,496,145	+		DZA65_RS07195	0.70	-0.5
1,496,145	+		DZA65_RS07195	0.70	+0.0
1,496,145	+		DZA65_RS07195	0.70	+0.3
1,496,145	+		DZA65_RS07195	0.70	-1.5
1,496,145	+		DZA65_RS07195	0.70	-1.6
1,496,145	+		DZA65_RS07195	0.70	+0.8
1,496,145	+		DZA65_RS07195	0.70	-0.3
1,496,146	-		DZA65_RS07195	0.71	+0.4
1,496,146	-		DZA65_RS07195	0.71	-1.2
1,496,146	-		DZA65_RS07195	0.71	+2.2
1,496,146	-		DZA65_RS07195	0.71	+1.4
1,496,146	-		DZA65_RS07195	0.71	-1.2
1,496,146	-		DZA65_RS07195	0.71	-1.0
1,496,146	-		DZA65_RS07195	0.71	-1.2
1,496,146	-		DZA65_RS07195	0.71	-2.5
1,496,146	-		DZA65_RS07195	0.71	-3.1
1,496,146	-		DZA65_RS07195	0.71	-0.2
1,496,146	-		DZA65_RS07195	0.71	-0.2
1,496,146	-		DZA65_RS07195	0.71	-0.2
1,496,321	+				-0.4
1,496,321	+				-1.0
1,496,321	+				+0.7
1,496,321	+				-0.2
1,496,322	-				+0.5
1,496,322	-				+0.8
1,496,322	-				-1.2
1,496,349	+				-3.0
1,496,349	+				-1.7
1,496,350	-				-0.3
1,496,373	+				-1.7
1,496,373	+				-0.2
1,496,373	+				+0.2
1,496,373	+				-0.7
1,496,374	-				+1.0
1,496,374	-				-1.2
1,496,374	-				+1.4
1,496,396	-				+1.5
1,496,433	+				+0.7
1,496,434	-				+0.1
1,496,434	-				-0.7
1,496,493	-				-1.5
1,496,495	+				+0.8
1,496,495	+				+0.6
1,496,496	-				-1.7
1,496,496	-				-1.5
1,496,496	-				-0.1
1,496,512	-				-1.5
1,496,669	+		DZA65_RS07200	0.14	-0.2
1,496,669	+		DZA65_RS07200	0.14	+0.4
1,496,671	+		DZA65_RS07200	0.14	+2.4
1,496,693	+		DZA65_RS07200	0.15	+1.4
1,496,693	+		DZA65_RS07200	0.15	+0.1
1,496,693	+		DZA65_RS07200	0.15	+0.7
1,496,701	+		DZA65_RS07200	0.15	-2.3
1,496,729	+		DZA65_RS07200	0.17	-1.0
1,496,729	+		DZA65_RS07200	0.17	-0.2
1,496,729	+		DZA65_RS07200	0.17	+0.3
1,496,730	-		DZA65_RS07200	0.17	+0.1
1,496,730	-		DZA65_RS07200	0.17	-0.7
1,496,730	-		DZA65_RS07200	0.17	+0.1
1,496,737	+		DZA65_RS07200	0.17	-0.6
1,496,737	+				-1.7
1,496,738	-		DZA65_RS07200	0.17	-2.2
1,496,738	-		DZA65_RS07200	0.17	-0.8
1,496,738	-		DZA65_RS07200	0.17	-0.4
1,496,738	-		DZA65_RS07200	0.17	-2.7
1,496,738	-		DZA65_RS07200	0.17	-1.2
1,496,753	-		DZA65_RS07200	0.18	-0.7
1,496,843	+		DZA65_RS07200	0.22	+0.8
1,496,843	+		DZA65_RS07200	0.22	+0.8
1,496,843	+		DZA65_RS07200	0.22	-1.3
1,496,844	-		DZA65_RS07200	0.22	+2.3
1,497,073	+		DZA65_RS07200	0.33	+0.5
1,497,073	+		DZA65_RS07200	0.33	-1.5
1,497,086	+		DZA65_RS07200	0.33	-1.0
1,497,101	+		DZA65_RS07200	0.34	-1.7
1,497,101	+		DZA65_RS07200	0.34	+0.5
1,497,102	-		DZA65_RS07200	0.34	+1.5
1,497,102	-		DZA65_RS07200	0.34	-0.3
1,497,102	-		DZA65_RS07200	0.34	-0.3
1,497,145	+		DZA65_RS07200	0.36	+0.8
1,497,145	+		DZA65_RS07200	0.36	-0.4
1,497,145	+		DZA65_RS07200	0.36	+1.6
1,497,146	-		DZA65_RS07200	0.36	+1.7
1,497,146	-		DZA65_RS07200	0.36	-0.7
1,497,205	+		DZA65_RS07200	0.39	+0.8
1,497,206	-		DZA65_RS07200	0.39	-0.5