Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06285

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
1,307,592	+		DZA65_RS06280	0.64	+0.1
1,307,593	-		DZA65_RS06280	0.64	-1.6
1,307,593	-		DZA65_RS06280	0.64	+1.0
1,307,593	-		DZA65_RS06280	0.64	-1.5
1,307,593	-		DZA65_RS06280	0.64	-1.4
1,307,593	-		DZA65_RS06280	0.64	-0.3
1,307,593	-		DZA65_RS06280	0.64	-2.0
1,307,610	+		DZA65_RS06280	0.65	-2.9
1,307,610	+		DZA65_RS06280	0.65	+0.5
1,307,610	+		DZA65_RS06280	0.65	-0.0
1,307,610	+		DZA65_RS06280	0.65	+0.5
1,307,610	+		DZA65_RS06280	0.65	-0.6
1,307,611	-		DZA65_RS06280	0.65	-1.0
1,307,611	-		DZA65_RS06280	0.65	-0.0
1,307,611	-		DZA65_RS06280	0.65	-1.2
1,307,611	-		DZA65_RS06280	0.65	+1.6
1,307,611	-		DZA65_RS06280	0.65	-0.9
1,307,630	-		DZA65_RS06280	0.66	+0.1
1,307,647	+		DZA65_RS06280	0.66	-0.0
1,307,665	+		DZA65_RS06280	0.67	+0.7
1,307,665	+		DZA65_RS06280	0.67	-1.0
1,307,665	+		DZA65_RS06280	0.67	-2.0
1,307,665	+		DZA65_RS06280	0.67	-0.6
1,307,666	-		DZA65_RS06280	0.67	-3.7
1,307,666	-		DZA65_RS06280	0.67	-1.5
1,307,666	-		DZA65_RS06280	0.67	-1.7
1,307,666	-		DZA65_RS06280	0.67	-0.2
1,307,666	-		DZA65_RS06280	0.67	-0.2
1,307,666	-		DZA65_RS06280	0.67	+0.0
1,307,666	-		DZA65_RS06280	0.67	+0.2
1,307,680	+		DZA65_RS06280	0.67	+0.1
1,307,681	-		DZA65_RS06280	0.68	+0.5
1,307,712	+		DZA65_RS06280	0.69	+0.2
1,307,712	+		DZA65_RS06280	0.69	-0.5
1,307,713	-		DZA65_RS06280	0.69	-1.0
1,307,713	-		DZA65_RS06280	0.69	+1.0
1,307,713	-		DZA65_RS06280	0.69	-0.4
1,307,780	-		DZA65_RS06280	0.71	+1.2
1,307,844	-		DZA65_RS06280	0.74	-1.8
1,307,863	+		DZA65_RS06280	0.74	+0.4
1,307,863	+		DZA65_RS06280	0.74	+0.4
1,307,864	-		DZA65_RS06280	0.74	+2.0
1,307,864	-		DZA65_RS06280	0.74	-0.6
1,307,876	-		DZA65_RS06280	0.75	+1.0
1,307,955	+		DZA65_RS06280	0.78	+1.9
1,307,955	+		DZA65_RS06280	0.78	+0.2
1,307,955	+		DZA65_RS06280	0.78	-1.4
1,307,955	+		DZA65_RS06280	0.78	+0.8
1,307,955	+		DZA65_RS06280	0.78	+0.4
1,307,955	+		DZA65_RS06280	0.78	-1.1
1,307,955	+		DZA65_RS06280	0.78	+0.5
1,307,956	-		DZA65_RS06280	0.78	-0.1
1,307,956	-		DZA65_RS06280	0.78	-0.9
1,307,956	-		DZA65_RS06280	0.78	-0.3
1,307,956	-		DZA65_RS06280	0.78	+0.5
1,307,956	-		DZA65_RS06280	0.78	-1.4
1,307,956	-		DZA65_RS06280	0.78	-0.2
1,307,958	+		DZA65_RS06280	0.78	-1.4
1,307,958	+		DZA65_RS06280	0.78	-0.6
1,307,958	+		DZA65_RS06280	0.78	+0.4
1,307,958	+		DZA65_RS06280	0.78	-2.1
1,307,959	-		DZA65_RS06280	0.78	-0.1
1,307,959	-		DZA65_RS06280	0.78	-0.2
1,307,968	-		DZA65_RS06280	0.78	-1.1
1,308,069	+		DZA65_RS06280	0.82	-2.5
1,308,069	+		DZA65_RS06280	0.82	+0.6
1,308,069	+		DZA65_RS06280	0.82	-0.9
1,308,069	+		DZA65_RS06280	0.82	+0.1
1,308,070	-		DZA65_RS06280	0.82	+1.4
1,308,070	-		DZA65_RS06280	0.82	-0.4
1,308,070	-		DZA65_RS06280	0.82	-2.4
1,308,094	+		DZA65_RS06280	0.83	-0.9
1,308,094	+		DZA65_RS06280	0.83	-0.2
1,308,095	-		DZA65_RS06280	0.83	+0.9
1,308,130	+		DZA65_RS06280	0.84	+1.8
1,308,130	+		DZA65_RS06280	0.84	+0.4
1,308,130	+		DZA65_RS06280	0.84	-1.5
1,308,131	-		DZA65_RS06280	0.84	+1.7
1,308,150	+		DZA65_RS06280	0.85	-1.9
1,308,150	+		DZA65_RS06280	0.85	-0.9
1,308,153	+		DZA65_RS06280	0.85	-1.3
1,308,153	+		DZA65_RS06280	0.85	-0.6
1,308,153	+		DZA65_RS06280	0.85	-0.8
1,308,153	+		DZA65_RS06280	0.85	-0.6
1,308,153	+		DZA65_RS06280	0.85	+0.6
1,308,154	-		DZA65_RS06280	0.85	+0.9
1,308,154	-		DZA65_RS06280	0.85	-1.4
1,308,154	-		DZA65_RS06280	0.85	-0.3
1,308,154	-		DZA65_RS06280	0.85	+0.8
1,308,154	-		DZA65_RS06280	0.85	+1.1
1,308,154	-		DZA65_RS06280	0.85	-1.4
1,308,154	-		DZA65_RS06280	0.85	+0.2
1,308,154	-		DZA65_RS06280	0.85	+1.0
1,308,162	+		DZA65_RS06280	0.86	-0.1
1,308,162	+		DZA65_RS06280	0.86	+2.1
1,308,163	-		DZA65_RS06280	0.86	+1.5
1,308,166	+		DZA65_RS06280	0.86	+0.8
1,308,188	+		DZA65_RS06280	0.87	-1.1
1,308,188	+		DZA65_RS06280	0.87	+0.1
1,308,188	+		DZA65_RS06280	0.87	-1.1
1,308,188	+		DZA65_RS06280	0.87	-0.4
1,308,188	+				-1.1
1,308,188	+		DZA65_RS06280	0.87	-0.1
1,308,188	+		DZA65_RS06280	0.87	-0.4
1,308,189	-		DZA65_RS06280	0.87	+0.9
1,308,189	-				-1.1
1,308,189	-		DZA65_RS06280	0.87	-0.3
1,308,189	-		DZA65_RS06280	0.87	+0.8
1,308,189	-		DZA65_RS06280	0.87	-1.0
1,308,189	-		DZA65_RS06280	0.87	-0.1
1,308,198	+		DZA65_RS06280	0.87	-0.4
1,308,199	-		DZA65_RS06280	0.87	-0.6
1,308,199	-		DZA65_RS06280	0.87	-1.9
1,308,199	-		DZA65_RS06280	0.87	-0.6
1,308,199	-		DZA65_RS06280	0.87	+1.1
1,308,199	-		DZA65_RS06280	0.87	-1.4
1,308,288	+				+0.3
1,308,310	+				+0.9
1,308,310	+				+0.7
1,308,311	-				-1.5
1,308,366	+				+0.7
1,308,367	-				+0.7
1,308,391	-				-1.4
1,308,468	+				-0.1
1,308,468	+				-1.1
1,308,468	+				-3.0
1,308,468	+				-1.2
1,308,469	-				-1.1
1,308,469	-				-1.1
1,308,469	-				-0.1
1,308,469	-				-0.1
1,308,469	-				-0.6
1,308,472	+				-2.1
1,308,472	+				-0.8
1,308,472	+				+0.3
1,308,472	+				+1.4
1,308,472	+				+0.9
1,308,472	+				+1.4
1,308,472	+				-1.6
1,308,473	-				-0.8
1,308,473	-				+0.6
1,308,473	-				-2.3
1,308,473	-				-1.9
1,308,473	-				-0.4
1,308,473	-				+0.9
1,308,473	-				-1.1
1,308,473	-				-0.1
1,308,473	-				+0.9
1,308,473	-				-3.5
1,308,473	-				-0.1
1,308,474	+				+1.3
1,308,474	+				-0.2
1,308,474	+				-0.1
1,308,474	+				+2.6
1,308,474	+				-1.3
1,308,474	+				+2.2
1,308,474	+				-1.5
1,308,474	+				-1.4
1,308,474	+				-0.3
1,308,474	+				-1.4
1,308,474	+				-0.5
1,308,474	+				-2.5
1,308,474	+				+0.9
1,308,475	-				-0.2
1,308,475	-				-1.9
1,308,475	-				-0.6
1,308,475	-				+1.8
1,308,475	-				+0.1
1,308,475	-				+0.3
1,308,475	-				+0.4
1,308,475	-				-0.3
1,308,475	-				+0.5
1,308,475	-				-0.9
1,308,475	-				-2.9
1,308,475	-				-1.1
1,308,475	-				-1.6
1,308,475	-				+1.5
1,308,475	-				-0.1
1,308,475	-				-0.8
1,308,480	+				-1.1
1,308,512	-				-1.3
1,308,695	-		DZA65_RS06285	0.53	-0.6
1,308,750	-		DZA65_RS06285	0.73	-1.6
1,308,750	-		DZA65_RS06285	0.73	+0.9
1,308,753	+		DZA65_RS06285	0.74	+2.5
1,308,753	+		DZA65_RS06285	0.74	+0.4
1,308,754	-		DZA65_RS06285	0.75	-1.0
1,308,754	-		DZA65_RS06285	0.75	-1.6
1,308,754	-		DZA65_RS06285	0.75	+1.5
1,308,754	-		DZA65_RS06285	0.75	+0.4
1,308,754	-		DZA65_RS06285	0.75	+0.9
1,308,754	-		DZA65_RS06285	0.75	+1.6
1,308,754	-		DZA65_RS06285	0.75	-2.9
1,308,754	-		DZA65_RS06285	0.75	+0.9
1,308,830	-				+0.8
1,308,830	-				-1.6
1,308,830	-				-1.4
1,308,830	-				-0.8
1,308,833	+				-1.5
1,308,833	+				+0.9
1,308,833	+				+0.4
1,308,833	+				-0.7
1,308,834	-				-0.4
1,308,834	-				-0.5
1,308,834	-				-1.1
1,308,834	-				+0.1
1,308,846	+				+0.1
1,308,846	+				+1.0
1,308,846	+				-2.1
1,308,846	+				+0.9
1,308,847	-				+0.6
1,308,847	-				+0.4
1,308,847	-				+0.3
1,308,850	+				-2.4
1,308,850	+				-1.9
1,308,851	-				+1.9
1,308,916	+				-0.1
1,308,916	+				+0.4
1,308,916	+				-1.7
1,308,916	+				+1.0
1,308,916	+				-1.2
1,308,916	+				-0.9
1,308,917	-				+0.9
1,308,917	-				-1.5
1,308,917	-				-0.1
1,308,931	-				+0.6
1,308,931	-				-1.4
1,308,931	-				-2.4
1,308,955	-				-1.4
1,308,955	-				-0.2
1,308,955	-				+1.6
1,308,994	-				+0.4
1,309,001	+				-1.9
1,309,002	-				-0.4
1,309,002	-				-0.4
1,309,002	-				+0.2
1,309,002	-				+0.9
1,309,006	+				-0.3
1,309,006	+				-1.3
1,309,036	+				-0.3
1,309,052	-				+1.6
1,309,082	+				-1.1
1,309,083	-				+1.2
1,309,083	-				+2.5
1,309,083	-				-2.8
1,309,094	-				-1.1
1,309,138	+				+0.0
1,309,156	-				+0.4
1,309,172	+				+0.6
1,309,173	-				+1.4
1,309,192	+				-0.6
1,309,193	-				-0.1
1,309,240	+				-1.6
1,309,240	+				-0.6
1,309,241	-				-0.1
1,309,241	-				+0.1
1,309,256	+				-0.5
1,309,256	+				-0.9
1,309,256	+				+2.0
1,309,256	+				+0.4
1,309,257	-				+2.5
1,309,257	-				-0.3
1,309,257	-				+0.4
1,309,257	-				-0.9
1,309,257	-				+0.4
1,309,257	-				+0.7
1,309,257	-				-3.7
1,309,257	-				-0.6
1,309,258	+				+0.1
1,309,259	-				-1.6
1,309,259	-				+0.1
1,309,259	-				-0.5
1,309,259	-				-0.1
1,309,259	-				+1.9
1,309,267	+				-1.2
1,309,267	+				-1.2
1,309,268	-				-1.1
1,309,316	-				+0.5
1,309,339	-				-2.2
1,309,339	-				-0.5
1,309,426	-				-1.4
1,309,519	+				+0.5
1,309,524	+				-0.2
1,309,524	+				+0.6
1,309,525	-				+0.4
1,309,525	-				+2.2
1,309,525	-				-0.6
1,309,525	-				+1.4
1,309,525	-				+0.0
1,309,528	+				-0.6
1,309,528	+				-1.4
1,309,528	+				-0.4
1,309,528	+				-0.4
1,309,528	+				-1.6
1,309,528	+				+2.4
1,309,529	-				+0.7
1,309,529	-				+0.9
1,309,530	+				+1.8
1,309,530	+				+0.4
1,309,530	+				+0.6
1,309,601	-				-0.1
1,309,625	+				+1.7
1,309,633	-				-2.1
1,309,637	+				+0.4
1,309,750	+				-0.5
1,309,751	-				-1.5
1,309,769	+				-0.0