Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01615

Experiment: Stem-Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01605 and DZA65_RS01610 are separated by 15 nucleotidesDZA65_RS01610 and DZA65_RS01615 are separated by 316 nucleotidesDZA65_RS01615 and DZA65_RS01620 are separated by 4 nucleotidesDZA65_RS01620 and DZA65_RS01625 are separated by 92 nucleotidesDZA65_RS01625 and DZA65_RS01630 are separated by 68 nucleotides DZA65_RS01605: DZA65_RS01605 - 50S ribosomal protein L13, at 347,381 to 347,809 _RS01605 DZA65_RS01610: DZA65_RS01610 - 30S ribosomal protein S9, at 347,825 to 348,217 _RS01610 DZA65_RS01615: DZA65_RS01615 - stringent starvation protein A, at 348,534 to 349,175 _RS01615 DZA65_RS01620: DZA65_RS01620 - ClpXP protease specificity-enhancing factor, at 349,180 to 349,677 _RS01620 DZA65_RS01625: DZA65_RS01625 - hypothetical protein, at 349,770 to 350,009 _RS01625 DZA65_RS01630: DZA65_RS01630 - FAD-dependent oxidoreductase, at 350,078 to 351,496 _RS01630 Position (kb) 348 349 350Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 348.328 kb on - strandat 348.374 kb on + strandat 348.380 kb on - strandat 348.380 kb on - strandat 348.380 kb on - strandat 348.417 kb on + strandat 348.417 kb on + strandat 348.486 kb on + strandat 348.486 kb on + strandat 348.486 kb on + strandat 348.487 kb on - strandat 348.596 kb on + strandat 348.597 kb on - strandat 348.665 kb on + strand, within DZA65_RS01615at 348.666 kb on - strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.753 kb on - strand, within DZA65_RS01615at 348.753 kb on - strand, within DZA65_RS01615at 348.753 kb on - strand, within DZA65_RS01615at 348.753 kb on - strand, within DZA65_RS01615at 348.753 kb on - strand, within DZA65_RS01615at 348.765 kb on + strand, within DZA65_RS01615at 348.765 kb on + strand, within DZA65_RS01615at 348.765 kb on + strand, within DZA65_RS01615at 348.766 kb on - strand, within DZA65_RS01615at 348.766 kb on - strand, within DZA65_RS01615at 348.807 kb on + strand, within DZA65_RS01615at 348.864 kb on + strand, within DZA65_RS01615at 348.864 kb on + strand, within DZA65_RS01615at 348.975 kb on + strand, within DZA65_RS01615at 348.975 kb on + strand, within DZA65_RS01615at 348.975 kb on + strand, within DZA65_RS01615at 348.976 kb on - strand, within DZA65_RS01615at 349.011 kb on + strand, within DZA65_RS01615at 349.012 kb on - strand, within DZA65_RS01615at 349.012 kb on - strand, within DZA65_RS01615at 349.012 kb on - strand, within DZA65_RS01615at 349.089 kb on + strand, within DZA65_RS01615at 349.089 kb on + strand, within DZA65_RS01615at 349.089 kb on + strand, within DZA65_RS01615at 349.089 kb on + strand, within DZA65_RS01615at 349.090 kb on - strand, within DZA65_RS01615at 349.090 kb on - strand, within DZA65_RS01615at 349.213 kb on + strandat 349.214 kb on - strandat 349.217 kb on + strandat 349.217 kb on + strandat 349.217 kb on + strandat 349.217 kb on + strandat 349.218 kb on - strandat 349.218 kb on - strandat 349.218 kb on - strandat 349.218 kb on - strandat 349.218 kb on - strandat 349.218 kb on - strandat 349.218 kb on - strandat 349.231 kb on + strand, within DZA65_RS01620at 349.231 kb on + strand, within DZA65_RS01620at 349.231 kb on + strand, within DZA65_RS01620at 349.231 kb on + strand, within DZA65_RS01620at 349.232 kb on - strand, within DZA65_RS01620at 349.338 kb on - strand, within DZA65_RS01620at 349.338 kb on - strand, within DZA65_RS01620at 349.338 kb on - strand, within DZA65_RS01620at 349.341 kb on + strand, within DZA65_RS01620at 349.341 kb on + strand, within DZA65_RS01620at 349.341 kb on + strand, within DZA65_RS01620at 349.388 kb on + strand, within DZA65_RS01620at 349.388 kb on + strand, within DZA65_RS01620at 349.388 kb on + strand, within DZA65_RS01620at 349.388 kb on + strand, within DZA65_RS01620at 349.389 kb on - strand, within DZA65_RS01620at 349.389 kb on - strand, within DZA65_RS01620at 349.389 kb on - strand, within DZA65_RS01620at 349.389 kb on - strand, within DZA65_RS01620at 349.459 kb on + strand, within DZA65_RS01620at 349.459 kb on + strand, within DZA65_RS01620at 349.459 kb on + strand, within DZA65_RS01620at 349.460 kb on - strand, within DZA65_RS01620at 349.460 kb on - strand, within DZA65_RS01620at 349.651 kb on - strandat 349.675 kb on + strandat 349.675 kb on + strandat 349.675 kb on + strandat 349.717 kb on - strandat 349.743 kb on + strandat 349.743 kb on + strandat 349.744 kb on - strandat 349.749 kb on - strandat 349.749 kb on - strandat 349.749 kb on - strandat 349.770 kb on - strandat 349.779 kb on + strandat 349.780 kb on - strandat 349.817 kb on + strand, within DZA65_RS01625at 349.818 kb on - strandat 349.840 kb on - strand, within DZA65_RS01625at 349.840 kb on - strand, within DZA65_RS01625at 349.863 kb on + strand, within DZA65_RS01625at 349.920 kb on + strand, within DZA65_RS01625at 349.920 kb on + strand, within DZA65_RS01625at 349.921 kb on - strand, within DZA65_RS01625at 349.921 kb on - strand, within DZA65_RS01625at 349.923 kb on - strand, within DZA65_RS01625at 349.928 kb on + strand, within DZA65_RS01625at 349.928 kb on + strand, within DZA65_RS01625at 349.928 kb on + strand, within DZA65_RS01625at 349.929 kb on - strand, within DZA65_RS01625at 349.931 kb on + strand, within DZA65_RS01625at 349.931 kb on + strand, within DZA65_RS01625at 349.931 kb on + strand, within DZA65_RS01625at 349.931 kb on + strand, within DZA65_RS01625at 349.932 kb on - strand, within DZA65_RS01625at 349.932 kb on - strand, within DZA65_RS01625at 349.932 kb on - strand, within DZA65_RS01625at 349.941 kb on + strand, within DZA65_RS01625at 349.941 kb on + strand, within DZA65_RS01625at 349.996 kb on + strandat 349.996 kb on + strandat 349.997 kb on - strandat 349.997 kb on - strandat 349.997 kb on - strandat 349.997 kb on - strandat 349.998 kb on + strandat 349.998 kb on + strandat 349.999 kb on - strandat 350.000 kb on + strandat 350.001 kb on - strandat 350.001 kb on - strandat 350.001 kb on - strandat 350.007 kb on + strandat 350.008 kb on - strandat 350.011 kb on - strandat 350.037 kb on - strandat 350.064 kb on + strandat 350.065 kb on - strandat 350.079 kb on + strandat 350.079 kb on + strandat 350.080 kb on - strandat 350.091 kb on + strandat 350.091 kb on + strandat 350.091 kb on + strandat 350.091 kb on + strandat 350.091 kb on + strandat 350.092 kb on - strandat 350.092 kb on - strandat 350.092 kb on - strandat 350.092 kb on - strandat 350.092 kb on - strandat 350.116 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Norland
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348,328 - +0.2
348,374 + -0.2
348,380 - -1.8
348,380 - -0.6
348,380 - -0.9
348,417 + -1.5
348,417 + -0.9
348,486 + -1.8
348,486 + -1.4
348,486 + -0.3
348,487 - -0.5
348,596 + -3.2
348,597 - -2.5
348,665 + DZA65_RS01615 0.20 -2.6
348,666 - DZA65_RS01615 0.21 -2.8
348,741 + DZA65_RS01615 0.32 -2.0
348,741 + DZA65_RS01615 0.32 -0.6
348,741 + DZA65_RS01615 0.32 -1.7
348,741 + DZA65_RS01615 0.32 -3.2
348,741 + DZA65_RS01615 0.32 -0.9
348,741 + DZA65_RS01615 0.32 -0.9
348,741 + DZA65_RS01615 0.32 -3.2
348,742 - DZA65_RS01615 0.32 -3.1
348,742 - DZA65_RS01615 0.32 -2.9
348,742 - DZA65_RS01615 0.32 -2.3
348,742 - DZA65_RS01615 0.32 -1.2
348,742 - DZA65_RS01615 0.32 -1.0
348,742 - DZA65_RS01615 0.32 -1.5
348,742 - DZA65_RS01615 0.32 -2.3
348,752 + DZA65_RS01615 0.34 +0.1
348,752 + DZA65_RS01615 0.34 -1.9
348,752 + DZA65_RS01615 0.34 +0.3
348,752 + DZA65_RS01615 0.34 -1.5
348,752 + DZA65_RS01615 0.34 +0.3
348,752 + DZA65_RS01615 0.34 -0.0
348,752 + DZA65_RS01615 0.34 -0.7
348,752 + DZA65_RS01615 0.34 -2.3
348,752 + DZA65_RS01615 0.34 -1.5
348,752 + DZA65_RS01615 0.34 -2.6
348,752 + DZA65_RS01615 0.34 -1.2
348,752 + DZA65_RS01615 0.34 -1.2
348,752 + DZA65_RS01615 0.34 -0.3
348,753 - DZA65_RS01615 0.34 -1.7
348,753 - DZA65_RS01615 0.34 -2.2
348,753 - DZA65_RS01615 0.34 -1.7
348,753 - DZA65_RS01615 0.34 -1.6
348,753 - DZA65_RS01615 0.34 -0.8
348,765 + DZA65_RS01615 0.36 +1.1
348,765 + DZA65_RS01615 0.36 +0.5
348,765 + DZA65_RS01615 0.36 +0.4
348,766 - DZA65_RS01615 0.36 -0.9
348,766 - DZA65_RS01615 0.36 -1.9
348,807 + DZA65_RS01615 0.43 -2.1
348,864 + DZA65_RS01615 0.51 -1.3
348,864 + DZA65_RS01615 0.51 -0.2
348,975 + DZA65_RS01615 0.69 -1.1
348,975 + DZA65_RS01615 0.69 -0.9
348,975 + DZA65_RS01615 0.69 -0.7
348,976 - DZA65_RS01615 0.69 -2.2
349,011 + DZA65_RS01615 0.74 -0.6
349,012 - DZA65_RS01615 0.74 -1.2
349,012 - DZA65_RS01615 0.74 -2.3
349,012 - DZA65_RS01615 0.74 -2.0
349,089 + DZA65_RS01615 0.86 +0.5
349,089 + DZA65_RS01615 0.86 -1.2
349,089 + DZA65_RS01615 0.86 -1.5
349,089 + DZA65_RS01615 0.86 -2.6
349,090 - DZA65_RS01615 0.87 -2.1
349,090 - DZA65_RS01615 0.87 -0.5
349,213 + -1.7
349,214 - -0.1
349,217 + -2.2
349,217 + -0.7
349,217 + +0.1
349,217 + -0.2
349,218 - -0.5
349,218 - +0.5
349,218 - -0.8
349,218 - -0.3
349,218 - -1.2
349,218 - +0.5
349,218 - -0.2
349,231 + DZA65_RS01620 0.10 -1.2
349,231 + DZA65_RS01620 0.10 +0.1
349,231 + DZA65_RS01620 0.10 +0.2
349,231 + DZA65_RS01620 0.10 -2.0
349,232 - DZA65_RS01620 0.10 +1.4
349,338 - DZA65_RS01620 0.32 +0.9
349,338 - DZA65_RS01620 0.32 +0.5
349,338 - DZA65_RS01620 0.32 -0.5
349,341 + DZA65_RS01620 0.32 +1.3
349,341 + DZA65_RS01620 0.32 +0.5
349,341 + DZA65_RS01620 0.32 -2.8
349,388 + DZA65_RS01620 0.42 -0.5
349,388 + DZA65_RS01620 0.42 +0.5
349,388 + DZA65_RS01620 0.42 -3.0
349,388 + DZA65_RS01620 0.42 +0.9
349,389 - DZA65_RS01620 0.42 +0.1
349,389 - DZA65_RS01620 0.42 +0.7
349,389 - DZA65_RS01620 0.42 -1.0
349,389 - DZA65_RS01620 0.42 +2.6
349,459 + DZA65_RS01620 0.56 -0.8
349,459 + DZA65_RS01620 0.56 -0.1
349,459 + DZA65_RS01620 0.56 +0.7
349,460 - DZA65_RS01620 0.56 -0.2
349,460 - DZA65_RS01620 0.56 +1.1
349,651 - +1.1
349,675 + +1.1
349,675 + +2.1
349,675 + +0.1
349,717 - +0.8
349,743 + -1.0
349,743 + -1.5
349,744 - +1.9
349,749 - +0.7
349,749 - -1.7
349,749 - -0.3
349,770 - -1.2
349,779 + +0.5
349,780 - -2.3
349,817 + DZA65_RS01625 0.20 -0.4
349,818 - -1.9
349,840 - DZA65_RS01625 0.29 -2.2
349,840 - DZA65_RS01625 0.29 -0.5
349,863 + DZA65_RS01625 0.39 +0.6
349,920 + DZA65_RS01625 0.62 -0.5
349,920 + DZA65_RS01625 0.62 +1.1
349,921 - DZA65_RS01625 0.63 -0.6
349,921 - DZA65_RS01625 0.63 -0.2
349,923 - DZA65_RS01625 0.64 +1.1
349,928 + DZA65_RS01625 0.66 -0.9
349,928 + DZA65_RS01625 0.66 -0.7
349,928 + DZA65_RS01625 0.66 -0.1
349,929 - DZA65_RS01625 0.66 -0.1
349,931 + DZA65_RS01625 0.67 +0.1
349,931 + DZA65_RS01625 0.67 -1.5
349,931 + DZA65_RS01625 0.67 -2.3
349,931 + DZA65_RS01625 0.67 -0.1
349,932 - DZA65_RS01625 0.68 -1.9
349,932 - DZA65_RS01625 0.68 -0.7
349,932 - DZA65_RS01625 0.68 -0.9
349,941 + DZA65_RS01625 0.71 -2.1
349,941 + DZA65_RS01625 0.71 +0.1
349,996 + -0.5
349,996 + +0.7
349,997 - -0.5
349,997 - -0.9
349,997 - +1.1
349,997 - +1.5
349,998 + +3.3
349,998 + -1.5
349,999 - -1.2
350,000 + -1.2
350,001 - -0.7
350,001 - -0.9
350,001 - -0.3
350,007 + -0.3
350,008 - -1.9
350,011 - -0.3
350,037 - +1.5
350,064 + -1.6
350,065 - +0.9
350,079 + -0.9
350,079 + -0.9
350,080 - -0.7
350,091 + +2.5
350,091 + +0.5
350,091 + +2.6
350,091 + -0.9
350,091 + -1.3
350,092 - +0.7
350,092 - -2.4
350,092 - -0.9
350,092 - -0.3
350,092 - -1.5
350,116 + -0.2

Or see this region's nucleotide sequence