Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01605

Experiment: Stem-Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01595 and DZA65_RS01605 are separated by 254 nucleotidesDZA65_RS01605 and DZA65_RS01610 are separated by 15 nucleotidesDZA65_RS01610 and DZA65_RS01615 are separated by 316 nucleotides DZA65_RS01595: DZA65_RS01595 - cell division protein ZapE, at 345,996 to 347,126 _RS01595 DZA65_RS01605: DZA65_RS01605 - 50S ribosomal protein L13, at 347,381 to 347,809 _RS01605 DZA65_RS01610: DZA65_RS01610 - 30S ribosomal protein S9, at 347,825 to 348,217 _RS01610 DZA65_RS01615: DZA65_RS01615 - stringent starvation protein A, at 348,534 to 349,175 _RS01615 Position (kb) 347 348Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 346.398 kb on - strand, within DZA65_RS01595at 346.446 kb on - strand, within DZA65_RS01595at 346.523 kb on + strand, within DZA65_RS01595at 346.523 kb on + strand, within DZA65_RS01595at 346.524 kb on - strand, within DZA65_RS01595at 346.542 kb on + strand, within DZA65_RS01595at 346.580 kb on + strand, within DZA65_RS01595at 346.609 kb on + strand, within DZA65_RS01595at 346.609 kb on + strand, within DZA65_RS01595at 346.609 kb on + strand, within DZA65_RS01595at 346.610 kb on - strand, within DZA65_RS01595at 346.610 kb on - strand, within DZA65_RS01595at 346.610 kb on - strand, within DZA65_RS01595at 346.610 kb on - strand, within DZA65_RS01595at 346.610 kb on - strand, within DZA65_RS01595at 346.646 kb on + strand, within DZA65_RS01595at 346.646 kb on + strand, within DZA65_RS01595at 346.647 kb on - strand, within DZA65_RS01595at 346.668 kb on + strand, within DZA65_RS01595at 346.668 kb on + strand, within DZA65_RS01595at 346.668 kb on + strand, within DZA65_RS01595at 346.668 kb on + strand, within DZA65_RS01595at 346.668 kb on + strand, within DZA65_RS01595at 346.669 kb on - strand, within DZA65_RS01595at 346.669 kb on - strand, within DZA65_RS01595at 346.669 kb on - strand, within DZA65_RS01595at 346.669 kb on - strand, within DZA65_RS01595at 346.669 kb on - strand, within DZA65_RS01595at 346.669 kb on - strand, within DZA65_RS01595at 346.669 kb on - strand, within DZA65_RS01595at 346.769 kb on + strand, within DZA65_RS01595at 346.770 kb on - strand, within DZA65_RS01595at 346.770 kb on - strand, within DZA65_RS01595at 346.863 kb on + strand, within DZA65_RS01595at 346.863 kb on + strand, within DZA65_RS01595at 346.863 kb on + strand, within DZA65_RS01595at 346.863 kb on + strand, within DZA65_RS01595at 346.863 kb on + strand, within DZA65_RS01595at 346.864 kb on - strand, within DZA65_RS01595at 346.864 kb on - strand, within DZA65_RS01595at 346.864 kb on - strand, within DZA65_RS01595at 346.864 kb on - strand, within DZA65_RS01595at 346.864 kb on - strand, within DZA65_RS01595at 346.864 kb on - strand, within DZA65_RS01595at 346.864 kb on - strand, within DZA65_RS01595at 346.864 kb on - strand, within DZA65_RS01595at 346.884 kb on + strand, within DZA65_RS01595at 346.884 kb on + strand, within DZA65_RS01595at 346.885 kb on - strand, within DZA65_RS01595at 346.885 kb on - strand, within DZA65_RS01595at 346.885 kb on - strand, within DZA65_RS01595at 346.974 kb on + strand, within DZA65_RS01595at 346.974 kb on + strand, within DZA65_RS01595at 346.974 kb on + strand, within DZA65_RS01595at 346.975 kb on - strand, within DZA65_RS01595at 346.997 kb on + strand, within DZA65_RS01595at 346.997 kb on + strand, within DZA65_RS01595at 346.997 kb on + strand, within DZA65_RS01595at 346.997 kb on + strand, within DZA65_RS01595at 346.997 kb on + strand, within DZA65_RS01595at 346.998 kb on - strand, within DZA65_RS01595at 346.998 kb on - strand, within DZA65_RS01595at 346.998 kb on - strand, within DZA65_RS01595at 346.998 kb on - strand, within DZA65_RS01595at 347.029 kb on - strandat 347.055 kb on + strandat 347.100 kb on + strandat 347.101 kb on - strandat 347.101 kb on - strandat 347.155 kb on - strandat 348.328 kb on - strandat 348.374 kb on + strandat 348.380 kb on - strandat 348.380 kb on - strandat 348.380 kb on - strandat 348.417 kb on + strandat 348.417 kb on + strandat 348.486 kb on + strandat 348.486 kb on + strandat 348.486 kb on + strandat 348.487 kb on - strandat 348.596 kb on + strandat 348.597 kb on - strandat 348.665 kb on + strand, within DZA65_RS01615at 348.666 kb on - strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.741 kb on + strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.742 kb on - strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.752 kb on + strand, within DZA65_RS01615at 348.753 kb on - strand, within DZA65_RS01615at 348.753 kb on - strand, within DZA65_RS01615at 348.753 kb on - strand, within DZA65_RS01615at 348.753 kb on - strand, within DZA65_RS01615at 348.753 kb on - strand, within DZA65_RS01615at 348.765 kb on + strand, within DZA65_RS01615at 348.765 kb on + strand, within DZA65_RS01615at 348.765 kb on + strand, within DZA65_RS01615at 348.766 kb on - strand, within DZA65_RS01615at 348.766 kb on - strand, within DZA65_RS01615at 348.807 kb on + strand, within DZA65_RS01615

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Norland
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346,398 - DZA65_RS01595 0.36 +0.1
346,446 - DZA65_RS01595 0.40 -1.9
346,523 + DZA65_RS01595 0.47 -1.2
346,523 + DZA65_RS01595 0.47 -1.5
346,524 - DZA65_RS01595 0.47 +0.1
346,542 + DZA65_RS01595 0.48 -1.7
346,580 + DZA65_RS01595 0.52 -1.7
346,609 + DZA65_RS01595 0.54 +2.0
346,609 + DZA65_RS01595 0.54 -1.7
346,609 + DZA65_RS01595 0.54 +1.9
346,610 - DZA65_RS01595 0.54 -0.7
346,610 - DZA65_RS01595 0.54 -1.1
346,610 - DZA65_RS01595 0.54 +0.1
346,610 - DZA65_RS01595 0.54 +1.1
346,610 - DZA65_RS01595 0.54 -1.2
346,646 + DZA65_RS01595 0.57 -1.5
346,646 + DZA65_RS01595 0.57 -0.9
346,647 - DZA65_RS01595 0.58 -0.5
346,668 + DZA65_RS01595 0.59 +0.5
346,668 + DZA65_RS01595 0.59 -2.5
346,668 + DZA65_RS01595 0.59 -0.5
346,668 + DZA65_RS01595 0.59 -0.3
346,668 + DZA65_RS01595 0.59 -1.3
346,669 - DZA65_RS01595 0.60 +1.1
346,669 - DZA65_RS01595 0.60 -0.7
346,669 - DZA65_RS01595 0.60 -1.0
346,669 - DZA65_RS01595 0.60 -0.0
346,669 - DZA65_RS01595 0.60 +1.1
346,669 - DZA65_RS01595 0.60 +0.6
346,669 - DZA65_RS01595 0.60 -2.1
346,769 + DZA65_RS01595 0.68 -1.9
346,770 - DZA65_RS01595 0.68 -0.6
346,770 - DZA65_RS01595 0.68 +1.1
346,863 + DZA65_RS01595 0.77 +2.5
346,863 + DZA65_RS01595 0.77 -1.2
346,863 + DZA65_RS01595 0.77 +0.1
346,863 + DZA65_RS01595 0.77 +1.3
346,863 + DZA65_RS01595 0.77 -2.3
346,864 - DZA65_RS01595 0.77 -1.2
346,864 - DZA65_RS01595 0.77 +0.1
346,864 - DZA65_RS01595 0.77 +0.5
346,864 - DZA65_RS01595 0.77 -1.2
346,864 - DZA65_RS01595 0.77 +1.4
346,864 - DZA65_RS01595 0.77 -2.0
346,864 - DZA65_RS01595 0.77 -0.5
346,864 - DZA65_RS01595 0.77 +0.7
346,884 + DZA65_RS01595 0.79 -0.5
346,884 + DZA65_RS01595 0.79 -2.8
346,885 - DZA65_RS01595 0.79 +2.7
346,885 - DZA65_RS01595 0.79 -0.3
346,885 - DZA65_RS01595 0.79 +1.4
346,974 + DZA65_RS01595 0.86 -1.2
346,974 + DZA65_RS01595 0.86 +1.4
346,974 + DZA65_RS01595 0.86 -0.9
346,975 - DZA65_RS01595 0.87 -0.9
346,997 + DZA65_RS01595 0.89 +0.4
346,997 + DZA65_RS01595 0.89 -0.7
346,997 + DZA65_RS01595 0.89 -0.5
346,997 + DZA65_RS01595 0.89 -1.1
346,997 + DZA65_RS01595 0.89 -1.3
346,998 - DZA65_RS01595 0.89 +1.1
346,998 - DZA65_RS01595 0.89 -1.6
346,998 - DZA65_RS01595 0.89 +2.7
346,998 - DZA65_RS01595 0.89 -0.6
347,029 - +0.5
347,055 + -2.7
347,100 + +1.1
347,101 - +1.5
347,101 - -0.2
347,155 - +0.1
348,328 - +0.2
348,374 + -0.2
348,380 - -1.8
348,380 - -0.6
348,380 - -0.9
348,417 + -1.5
348,417 + -0.9
348,486 + -1.8
348,486 + -1.4
348,486 + -0.3
348,487 - -0.5
348,596 + -3.2
348,597 - -2.5
348,665 + DZA65_RS01615 0.20 -2.6
348,666 - DZA65_RS01615 0.21 -2.8
348,741 + DZA65_RS01615 0.32 -2.0
348,741 + DZA65_RS01615 0.32 -0.6
348,741 + DZA65_RS01615 0.32 -1.7
348,741 + DZA65_RS01615 0.32 -3.2
348,741 + DZA65_RS01615 0.32 -0.9
348,741 + DZA65_RS01615 0.32 -0.9
348,741 + DZA65_RS01615 0.32 -3.2
348,742 - DZA65_RS01615 0.32 -3.1
348,742 - DZA65_RS01615 0.32 -2.9
348,742 - DZA65_RS01615 0.32 -2.3
348,742 - DZA65_RS01615 0.32 -1.2
348,742 - DZA65_RS01615 0.32 -1.0
348,742 - DZA65_RS01615 0.32 -1.5
348,742 - DZA65_RS01615 0.32 -2.3
348,752 + DZA65_RS01615 0.34 +0.1
348,752 + DZA65_RS01615 0.34 -1.9
348,752 + DZA65_RS01615 0.34 +0.3
348,752 + DZA65_RS01615 0.34 -1.5
348,752 + DZA65_RS01615 0.34 +0.3
348,752 + DZA65_RS01615 0.34 -0.0
348,752 + DZA65_RS01615 0.34 -0.7
348,752 + DZA65_RS01615 0.34 -2.3
348,752 + DZA65_RS01615 0.34 -1.5
348,752 + DZA65_RS01615 0.34 -2.6
348,752 + DZA65_RS01615 0.34 -1.2
348,752 + DZA65_RS01615 0.34 -1.2
348,752 + DZA65_RS01615 0.34 -0.3
348,753 - DZA65_RS01615 0.34 -1.7
348,753 - DZA65_RS01615 0.34 -2.2
348,753 - DZA65_RS01615 0.34 -1.7
348,753 - DZA65_RS01615 0.34 -1.6
348,753 - DZA65_RS01615 0.34 -0.8
348,765 + DZA65_RS01615 0.36 +1.1
348,765 + DZA65_RS01615 0.36 +0.5
348,765 + DZA65_RS01615 0.36 +0.4
348,766 - DZA65_RS01615 0.36 -0.9
348,766 - DZA65_RS01615 0.36 -1.9
348,807 + DZA65_RS01615 0.43 -2.1

Or see this region's nucleotide sequence